RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 IGHV6-1A0A0B4J1U7 121 aa10.97□□□□□ -0.65
CLN3-240ENST00000631023 A8MUU9 505 aa10.97□□□□□ -0.65
CLN3-240ENST00000631023 A0A1B0GVX0 72 aa10.94□□□□□ -0.66
CLN3-240ENST00000631023 C8orf87E5RJ46 101 aa10.92□□□□□ -0.66
CLN3-240ENST00000631023 NDUFB1O75438 58 aa10.92□□□□□ -0.66
CLN3-240ENST00000631023 LCE2AQ5TA79 106 aaPredicted RBP10.92□□□□□ -0.66
CLN3-240ENST00000631023 NOTCH2NLQ7Z3S9 236 aa10.91□□□□□ -0.66
CLN3-240ENST00000631023 K7EP34 96 aa10.9□□□□□ -0.66
CLN3-240ENST00000631023 NREPQ16612 68 aa10.9□□□□□ -0.66
CLN3-240ENST00000631023 KRTAP16-1A8MUX0 517 aa10.89□□□□□ -0.67
CLN3-240ENST00000631023 SMCPP49901 116 aaPredicted RBP10.87□□□□□ -0.67
CLN3-240ENST00000631023 GTF2H5Q6ZYL4 71 aa10.86□□□□□ -0.67
CLN3-240ENST00000631023 A8MWP4 228 aa10.86□□□□□ -0.67
CLN3-240ENST00000631023 PRO0461Q9UI25 63 aa10.83□□□□□ -0.68
CLN3-240ENST00000631023 KRTAP19-2Q3LHN2 52 aa10.8□□□□□ -0.68
CLN3-240ENST00000631023 LCE2CQ5TA81 110 aa10.79□□□□□ -0.68
CLN3-240ENST00000631023 IGKV3D-7A0A0C4DH55 119 aa10.78□□□□□ -0.68
CLN3-240ENST00000631023 C8orf17Q9NRJ1 99 aa10.77□□□□□ -0.69
CLN3-240ENST00000631023 COX6B2Q6YFQ2 88 aa10.76□□□□□ -0.69
CLN3-240ENST00000631023 PRR15Q8IV56 129 aa10.76□□□□□ -0.69
CLN3-240ENST00000631023 F8W1H4 67 aa10.75□□□□□ -0.69
CLN3-240ENST00000631023 BPY2O14599 106 aa10.73□□□□□ -0.69
CLN3-240ENST00000631023 Q6ZVQ6 151 aa10.7□□□□□ -0.7
CLN3-240ENST00000631023 Q8N9P0 234 aaPredicted RBP10.69□□□□□ -0.7
CLN3-240ENST00000631023 K7EQZ3 153 aa10.66□□□□□ -0.7
CLN3-240ENST00000631023 MT1HP80294 61 aa10.66□□□□□ -0.7
CLN3-240ENST00000631023 ZCCHC13Q8WW36 166 aaKnown RBP10.66□□□□□ -0.7
CLN3-240ENST00000631023 UBL5Q9BZL1 73 aa10.65□□□□□ -0.7
CLN3-240ENST00000631023 ETDBQ3ZM63 59 aa10.65□□□□□ -0.71
CLN3-240ENST00000631023 MMP24-AS1A0A0U1RRL7 71 aa10.63□□□□□ -0.71
CLN3-240ENST00000631023 TMEM254Q8TBM7 123 aa10.63□□□□□ -0.71
CLN3-240ENST00000631023 LINC00846Q9NV44 126 aa10.63□□□□□ -0.71
CLN3-240ENST00000631023 hDV103S1A0JD37 113 aa10.61□□□□□ -0.71
CLN3-240ENST00000631023 MRPL34Q9BQ48 92 aaKnown RBP10.61□□□□□ -0.71
CLN3-240ENST00000631023 M0R2T5 61 aa10.56□□□□□ -0.72
CLN3-240ENST00000631023 Q8N9L7 120 aa10.55□□□□□ -0.72
CLN3-240ENST00000631023 FLGP20930 4061 aaPredicted RBP10.55□□□□□ -0.72
CLN3-240ENST00000631023 RBM12B-AS1Q9P1G2 102 aa10.54□□□□□ -0.72
CLN3-240ENST00000631023 NDUFS5O43920 106 aa10.53□□□□□ -0.72
CLN3-240ENST00000631023 SPINK7P58062 85 aa10.52□□□□□ -0.73
CLN3-240ENST00000631023 HRES1P13985 223 aa10.51□□□□□ -0.73
CLN3-240ENST00000631023 FAM236DA0A1B0GTK5 79 aa10.5□□□□□ -0.73
CLN3-240ENST00000631023 FAM236CP0DP71 79 aa10.5□□□□□ -0.73
CLN3-240ENST00000631023 CASC2Q6XLA1 102 aa10.5□□□□□ -0.73
CLN3-240ENST00000631023 WFDC13Q8IUB5 93 aa10.5□□□□□ -0.73
CLN3-240ENST00000631023 MPLKIPQ8TAP9 179 aa10.47□□□□□ -0.73
CLN3-240ENST00000631023 CXCL6P80162 114 aa10.44□□□□□ -0.74
CLN3-240ENST00000631023 ACYP1P07311 99 aa10.43□□□□□ -0.74
CLN3-240ENST00000631023 HCG22E2RYF7 251 aa10.43□□□□□ -0.74
CLN3-240ENST00000631023 KRTAP10-6P60371 365 aaPredicted RBP10.43□□□□□ -0.74
CLN3-240ENST00000631023 KRTAP9-2Q9BYQ4 174 aa10.42□□□□□ -0.74
CLN3-240ENST00000631023 LORP23490 312 aaPredicted RBP10.4□□□□□ -0.74
CLN3-240ENST00000631023 A0A1B0GV90 55 aa10.39□□□□□ -0.75
CLN3-240ENST00000631023 FAM240AA0A1B0GVK7 77 aa10.37□□□□□ -0.75
CLN3-240ENST00000631023 Q5W150 140 aa10.35□□□□□ -0.75
CLN3-240ENST00000631023 IGKV2D-30A0A075B6S6 120 aa10.29□□□□□ -0.76
CLN3-240ENST00000631023 IGKV2-30P06310 120 aa10.29□□□□□ -0.76
CLN3-240ENST00000631023 LCE2DQ5TA82 110 aaPredicted RBP10.29□□□□□ -0.76
CLN3-240ENST00000631023 C7orf65Q6ZTY9 151 aa10.29□□□□□ -0.76
CLN3-240ENST00000631023 ATP5EP2Q5VTU8 51 aa10.26□□□□□ -0.77
CLN3-240ENST00000631023 TP53AIP1Q9HCN2 124 aa10.26□□□□□ -0.77
CLN3-240ENST00000631023 HIST1H4AP62805 103 aaKnown RBP10.18□□□□□ -0.78
CLN3-240ENST00000631023 LINC00643Q86TS7 51 aa10.18□□□□□ -0.78
CLN3-240ENST00000631023 J3QR89 54 aa10.14□□□□□ -0.79
CLN3-240ENST00000631023 KRTAP9-8Q9BYQ0 159 aa10.14□□□□□ -0.79
CLN3-240ENST00000631023 H1FX-AS1Q4G0G2 97 aa10.13□□□□□ -0.79
CLN3-240ENST00000631023 C4orf26Q17RF5 130 aa10.08□□□□□ -0.8
CLN3-240ENST00000631023 TRAV22A0A0B4J277 110 aa10.03□□□□□ -0.8
CLN3-240ENST00000631023 A0A087WVE0 104 aa10.01□□□□□ -0.81
CLN3-240ENST00000631023 MT2AP02795 61 aa10.01□□□□□ -0.81
CLN3-240ENST00000631023 UQCRQO14949 82 aa10□□□□□ -0.81
CLN3-240ENST00000631023 KRTAP9-6A0A140TA67 174 aa9.98□□□□□ -0.81
CLN3-240ENST00000631023 LOC101927531A0A1B0GV80 90 aa9.97□□□□□ -0.81
CLN3-240ENST00000631023 CYP4F30PQ9H0H9 118 aa9.97□□□□□ -0.81
CLN3-240ENST00000631023 FSIP2Q5CZC0 6907 aa9.96□□□□□ -0.81
CLN3-240ENST00000631023 KRTAP10-10P60014 251 aa9.95□□□□□ -0.82
CLN3-240ENST00000631023 C1orf64Q8NEQ6 169 aa9.95□□□□□ -0.82
CLN3-240ENST00000631023 ATOX1O00244 68 aa9.93□□□□□ -0.82
CLN3-240ENST00000631023 MT1FP04733 61 aa9.92□□□□□ -0.82
CLN3-240ENST00000631023 H0Y9P7 68 aa9.91□□□□□ -0.82
CLN3-240ENST00000631023 CRCT1Q9UGL9 99 aa9.91□□□□□ -0.82
CLN3-240ENST00000631023 KRTAP3-1Q9BYR8 98 aa9.89□□□□□ -0.83
CLN3-240ENST00000631023 K7ERU9 68 aa9.84□□□□□ -0.83
CLN3-240ENST00000631023 S4R3F8 94 aa9.84□□□□□ -0.83
CLN3-240ENST00000631023 OCR1Q9BZK8 76 aa9.83□□□□□ -0.84
CLN3-240ENST00000631023 MP68P56378 58 aa9.8□□□□□ -0.84
CLN3-240ENST00000631023 SCGB1A1P11684 91 aa9.8□□□□□ -0.84
CLN3-240ENST00000631023 KRTAP9-3Q9BYQ3 159 aa9.8□□□□□ -0.84
CLN3-240ENST00000631023 LINC00208Q96KT6 92 aa9.78□□□□□ -0.84
CLN3-240ENST00000631023 C5orf47Q569G3 176 aa9.77□□□□□ -0.85
CLN3-240ENST00000631023 IMUPQ9GZP8 106 aa9.76□□□□□ -0.85
CLN3-240ENST00000631023 CSAG1Q6PB30 78 aa9.75□□□□□ -0.85
CLN3-240ENST00000631023 LCA10Q71F78 164 aa9.75□□□□□ -0.85
CLN3-240ENST00000631023 H3BPC8 53 aa9.69□□□□□ -0.86
CLN3-240ENST00000631023 MT-ATP8P03928 68 aa9.69□□□□□ -0.86
CLN3-240ENST00000631023 LCE2BO14633 110 aa9.68□□□□□ -0.86
CLN3-240ENST00000631023 KLKP1Q107X0 134 aa9.66□□□□□ -0.86
CLN3-240ENST00000631023 USH2AO75445 5202 aa9.65□□□□□ -0.87
CLN3-240ENST00000631023 A8MUN3 132 aa9.64□□□□□ -0.87
CLN3-240ENST00000631023 FAM236AA0A1B0GUQ0 79 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms