RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ATXN8Q156A1 80 aa6.33□□□□□ -1.4
TRIM28-212ENST00000597995 LYRM7Q5U5X0 104 aa6.33□□□□□ -1.4
TRIM28-212ENST00000597995 RBM3P98179 157 aaKnown RBP6.32□□□□□ -1.4
TRIM28-212ENST00000597995 MT2AP02795 61 aa6.31□□□□□ -1.4
TRIM28-212ENST00000597995 BAALC-AS2P0C853 105 aa6.31□□□□□ -1.4
TRIM28-212ENST00000597995 LINC00313P59037 77 aa6.31□□□□□ -1.4
TRIM28-212ENST00000597995 LOC105371267A0A1B0GV96 52 aa6.3□□□□□ -1.4
TRIM28-212ENST00000597995 C9JAW5 83 aa6.29□□□□□ -1.4
TRIM28-212ENST00000597995 C21orf62-AS1Q17RA5 79 aa6.28□□□□□ -1.4
TRIM28-212ENST00000597995 FCGBPQ9Y6R7 5405 aaPredicted RBP6.28□□□□□ -1.4
TRIM28-212ENST00000597995 KRTAP19-1Q8IUB9 90 aa6.27□□□□□ -1.41
TRIM28-212ENST00000597995 LCE2BO14633 110 aa6.26□□□□□ -1.41
TRIM28-212ENST00000597995 IGHV6-1A0A0B4J1U7 121 aa6.25□□□□□ -1.41
TRIM28-212ENST00000597995 FAM236DA0A1B0GTK5 79 aa6.25□□□□□ -1.41
TRIM28-212ENST00000597995 JMJD7-PLA2G4BH0Y9G9 81 aa6.25□□□□□ -1.41
TRIM28-212ENST00000597995 MT1FP04733 61 aa6.25□□□□□ -1.41
TRIM28-212ENST00000597995 FAM236CP0DP71 79 aa6.25□□□□□ -1.41
TRIM28-212ENST00000597995 KRTAP9-3Q9BYQ3 159 aa6.25□□□□□ -1.41
TRIM28-212ENST00000597995 MPLKIPQ8TAP9 179 aa6.23□□□□□ -1.41
TRIM28-212ENST00000597995 RBM12B-AS1Q9P1G2 102 aa6.23□□□□□ -1.41
TRIM28-212ENST00000597995 A0A1B0GVX0 72 aa6.22□□□□□ -1.41
TRIM28-212ENST00000597995 KRTAP10-10P60014 251 aa6.22□□□□□ -1.41
TRIM28-212ENST00000597995 Q6ZQT0 140 aa6.22□□□□□ -1.41
TRIM28-212ENST00000597995 C8orf87E5RJ46 101 aa6.21□□□□□ -1.42
TRIM28-212ENST00000597995 HRES1P13985 223 aa6.21□□□□□ -1.42
TRIM28-212ENST00000597995 A0A1B0GW54 56 aa6.2□□□□□ -1.42
TRIM28-212ENST00000597995 J3KT08 172 aa6.2□□□□□ -1.42
TRIM28-212ENST00000597995 PDE6GP18545 87 aa6.2□□□□□ -1.42
TRIM28-212ENST00000597995 C14orf132Q9NPU4 83 aa6.19□□□□□ -1.42
TRIM28-212ENST00000597995 LOC110117498A0A087WWA1 95 aa6.18□□□□□ -1.42
TRIM28-212ENST00000597995 C9orf118A6NHY6 69 aa6.18□□□□□ -1.42
TRIM28-212ENST00000597995 NDUFB1O75438 58 aa6.18□□□□□ -1.42
TRIM28-212ENST00000597995 LINC00846Q9NV44 126 aa6.17□□□□□ -1.42
TRIM28-212ENST00000597995 A0A1W2PPM0 123 aa6.15□□□□□ -1.42
TRIM28-212ENST00000597995 MTURNQ8N3F0 131 aa6.15□□□□□ -1.42
TRIM28-212ENST00000597995 MACF1Q9UPN3 7388 aaKnown RBP6.14□□□□□ -1.43
TRIM28-212ENST00000597995 IGKV3D-7A0A0C4DH55 119 aa6.13□□□□□ -1.43
TRIM28-212ENST00000597995 H3BT86 120 aa6.13□□□□□ -1.43
TRIM28-212ENST00000597995 TAX1BP3O14907 124 aa6.13□□□□□ -1.43
TRIM28-212ENST00000597995 Q8N9P0 234 aaPredicted RBP6.13□□□□□ -1.43
TRIM28-212ENST00000597995 ZCCHC13Q8WW36 166 aaKnown RBP6.13□□□□□ -1.43
TRIM28-212ENST00000597995 A8MWP4 228 aa6.12□□□□□ -1.43
TRIM28-212ENST00000597995 NREPQ16612 68 aa6.12□□□□□ -1.43
TRIM28-212ENST00000597995 KRTAP19-6Q3LI70 58 aa6.11□□□□□ -1.43
TRIM28-212ENST00000597995 C8orf17Q9NRJ1 99 aa6.11□□□□□ -1.43
TRIM28-212ENST00000597995 SPCS1Q9Y6A9 102 aa6.11□□□□□ -1.43
TRIM28-212ENST00000597995 SYNE2Q8WXH0 6885 aaKnown RBP6.1□□□□□ -1.43
TRIM28-212ENST00000597995 SPINK7P58062 85 aa6.09□□□□□ -1.43
TRIM28-212ENST00000597995 COL5A1-AS1Q5SY13 56 aa6.09□□□□□ -1.43
TRIM28-212ENST00000597995 PRR15Q8IV56 129 aa6.07□□□□□ -1.44
TRIM28-212ENST00000597995 Q6ZVQ6 151 aa6.05□□□□□ -1.44
TRIM28-212ENST00000597995 MMP24-AS1A0A0U1RRL7 71 aa6.04□□□□□ -1.44
TRIM28-212ENST00000597995 PCP4L1A6NKN8 68 aa6.04□□□□□ -1.44
TRIM28-212ENST00000597995 BPY2O14599 106 aa6.03□□□□□ -1.44
TRIM28-212ENST00000597995 NDUFS5O43920 106 aa6.03□□□□□ -1.44
TRIM28-212ENST00000597995 K7EQZ3 153 aa6.01□□□□□ -1.45
TRIM28-212ENST00000597995 TMEM254Q8TBM7 123 aa6□□□□□ -1.45
TRIM28-212ENST00000597995 MRPL34Q9BQ48 92 aaKnown RBP6□□□□□ -1.45
TRIM28-212ENST00000597995 K7EP34 96 aa5.99□□□□□ -1.45
TRIM28-212ENST00000597995 KRTAP6-3Q3LI67 103 aa5.99□□□□□ -1.45
TRIM28-212ENST00000597995 WFDC13Q8IUB5 93 aa5.99□□□□□ -1.45
TRIM28-212ENST00000597995 SMCPP49901 116 aaPredicted RBP5.98□□□□□ -1.45
TRIM28-212ENST00000597995 GTF2H5Q6ZYL4 71 aa5.98□□□□□ -1.45
TRIM28-212ENST00000597995 hDV103S1A0JD37 113 aa5.97□□□□□ -1.45
TRIM28-212ENST00000597995 UBL5Q9BZL1 73 aa5.96□□□□□ -1.46
TRIM28-212ENST00000597995 Q8N9L7 120 aa5.94□□□□□ -1.46
TRIM28-212ENST00000597995 Q5W150 140 aa5.93□□□□□ -1.46
TRIM28-212ENST00000597995 PRO0461Q9UI25 63 aa5.93□□□□□ -1.46
TRIM28-212ENST00000597995 CASC2Q6XLA1 102 aa5.91□□□□□ -1.46
TRIM28-212ENST00000597995 IGKV2D-30A0A075B6S6 120 aa5.88□□□□□ -1.47
TRIM28-212ENST00000597995 F8W1H4 67 aa5.88□□□□□ -1.47
TRIM28-212ENST00000597995 IGKV2-30P06310 120 aa5.88□□□□□ -1.47
TRIM28-212ENST00000597995 HCG22E2RYF7 251 aa5.87□□□□□ -1.47
TRIM28-212ENST00000597995 ETDBQ3ZM63 59 aa5.86□□□□□ -1.47
TRIM28-212ENST00000597995 H1FX-AS1Q4G0G2 97 aa5.86□□□□□ -1.47
TRIM28-212ENST00000597995 C7orf65Q6ZTY9 151 aa5.84□□□□□ -1.47
TRIM28-212ENST00000597995 CXCL6P80162 114 aa5.82□□□□□ -1.48
TRIM28-212ENST00000597995 C4orf26Q17RF5 130 aa5.79□□□□□ -1.48
TRIM28-212ENST00000597995 NEBP20929 6669 aa5.77□□□□□ -1.49
TRIM28-212ENST00000597995 KRTAP3-1Q9BYR8 98 aa5.76□□□□□ -1.49
TRIM28-212ENST00000597995 ACYP1P07311 99 aa5.73□□□□□ -1.49
TRIM28-212ENST00000597995 TP53AIP1Q9HCN2 124 aa5.73□□□□□ -1.49
TRIM28-212ENST00000597995 A6NN06 94 aa5.72□□□□□ -1.49
TRIM28-212ENST00000597995 HIST1H4AP62805 103 aaKnown RBP5.71□□□□□ -1.5
TRIM28-212ENST00000597995 ATP5EP2Q5VTU8 51 aa5.69□□□□□ -1.5
TRIM28-212ENST00000597995 FAM240AA0A1B0GVK7 77 aa5.68□□□□□ -1.5
TRIM28-212ENST00000597995 MT1BP07438 61 aa5.67□□□□□ -1.5
TRIM28-212ENST00000597995 C5orf47Q569G3 176 aa5.67□□□□□ -1.5
TRIM28-212ENST00000597995 MUC12Q9UKN1 5478 aa5.67□□□□□ -1.5
TRIM28-212ENST00000597995 KRTAP20-1Q3LI63 56 aa5.66□□□□□ -1.5
TRIM28-212ENST00000597995 Q5VV11 94 aa5.66□□□□□ -1.5
TRIM28-212ENST00000597995 C1orf64Q8NEQ6 169 aa5.66□□□□□ -1.5
TRIM28-212ENST00000597995 FAM236AA0A1B0GUQ0 79 aa5.64□□□□□ -1.51
TRIM28-212ENST00000597995 FAM236BA0A1B0GV22 79 aa5.64□□□□□ -1.51
TRIM28-212ENST00000597995 KRTAP19-8Q3LI54 63 aa5.64□□□□□ -1.51
TRIM28-212ENST00000597995 S4R3F8 94 aa5.64□□□□□ -1.51
TRIM28-212ENST00000597995 TRAV22A0A0B4J277 110 aa5.63□□□□□ -1.51
TRIM28-212ENST00000597995 A0A1B0GV90 55 aa5.63□□□□□ -1.51
TRIM28-212ENST00000597995 LCA10Q71F78 164 aa5.63□□□□□ -1.51
TRIM28-212ENST00000597995 SPRR2GQ9BYE4 73 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms