RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 DSCR10P59022 87 aa13.75□□□□□ -0.21
TRIM28-204ENST00000594806 C20orf166-AS1Q96NR2 134 aa13.75□□□□□ -0.21
TRIM28-204ENST00000594806 PRO0461Q9UI25 63 aa13.74□□□□□ -0.21
TRIM28-204ENST00000594806 ATP11AUNQ6ZP68 121 aa13.72□□□□□ -0.21
TRIM28-204ENST00000594806 A8MUU9 505 aa13.71□□□□□ -0.21
TRIM28-204ENST00000594806 IGHV6-1A0A0B4J1U7 121 aa13.7□□□□□ -0.22
TRIM28-204ENST00000594806 A0A1B0GVX0 72 aa13.7□□□□□ -0.22
TRIM28-204ENST00000594806 C8orf87E5RJ46 101 aa13.7□□□□□ -0.22
TRIM28-204ENST00000594806 NREPQ16612 68 aa13.7□□□□□ -0.22
TRIM28-204ENST00000594806 NDUFB1O75438 58 aa13.69□□□□□ -0.22
TRIM28-204ENST00000594806 F8W1H4 67 aa13.64□□□□□ -0.23
TRIM28-204ENST00000594806 KRTAP16-1A8MUX0 517 aa13.63□□□□□ -0.23
TRIM28-204ENST00000594806 A8MWP4 228 aa13.63□□□□□ -0.23
TRIM28-204ENST00000594806 NOTCH2NLQ7Z3S9 236 aa13.63□□□□□ -0.23
TRIM28-204ENST00000594806 IGKV3D-7A0A0C4DH55 119 aa13.53□□□□□ -0.24
TRIM28-204ENST00000594806 FAT4Q6V0I7 4981 aa13.53□□□□□ -0.24
TRIM28-204ENST00000594806 PRR15Q8IV56 129 aa13.52□□□□□ -0.25
TRIM28-204ENST00000594806 C8orf17Q9NRJ1 99 aa13.5□□□□□ -0.25
TRIM28-204ENST00000594806 Q6ZVQ6 151 aa13.49□□□□□ -0.25
TRIM28-204ENST00000594806 BPY2O14599 106 aa13.48□□□□□ -0.25
TRIM28-204ENST00000594806 LCE2AQ5TA79 106 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-204ENST00000594806 ETDBQ3ZM63 59 aa13.47□□□□□ -0.25
TRIM28-204ENST00000594806 UBL5Q9BZL1 73 aa13.44□□□□□ -0.26
TRIM28-204ENST00000594806 Q8N9P0 234 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-204ENST00000594806 KRTAP19-2Q3LHN2 52 aa13.41□□□□□ -0.26
TRIM28-204ENST00000594806 LINC00846Q9NV44 126 aa13.41□□□□□ -0.26
TRIM28-204ENST00000594806 K7EQZ3 153 aa13.39□□□□□ -0.27
TRIM28-204ENST00000594806 LCE2CQ5TA81 110 aa13.37□□□□□ -0.27
TRIM28-204ENST00000594806 MMP24-AS1A0A0U1RRL7 71 aa13.35□□□□□ -0.27
TRIM28-204ENST00000594806 TMEM254Q8TBM7 123 aa13.35□□□□□ -0.27
TRIM28-204ENST00000594806 ZCCHC13Q8WW36 166 aaKnown RBP13.33□□□□□ -0.28
TRIM28-204ENST00000594806 MRPL34Q9BQ48 92 aaKnown RBP13.32□□□□□ -0.28
TRIM28-204ENST00000594806 hDV103S1A0JD37 113 aa13.31□□□□□ -0.28
TRIM28-204ENST00000594806 COX6B2Q6YFQ2 88 aa13.29□□□□□ -0.28
TRIM28-204ENST00000594806 ACYP1P07311 99 aa13.24□□□□□ -0.29
TRIM28-204ENST00000594806 Q8N9L7 120 aa13.23□□□□□ -0.29
TRIM28-204ENST00000594806 A0A1B0GV90 55 aa13.22□□□□□ -0.29
TRIM28-204ENST00000594806 CXCL6P80162 114 aa13.19□□□□□ -0.3
TRIM28-204ENST00000594806 MT1HP80294 61 aa13.19□□□□□ -0.3
TRIM28-204ENST00000594806 CASC2Q6XLA1 102 aa13.19□□□□□ -0.3
TRIM28-204ENST00000594806 FAM240AA0A1B0GVK7 77 aa13.18□□□□□ -0.3
TRIM28-204ENST00000594806 NDUFS5O43920 106 aa13.16□□□□□ -0.3
TRIM28-204ENST00000594806 WFDC13Q8IUB5 93 aa13.16□□□□□ -0.3
TRIM28-204ENST00000594806 SPINK7P58062 85 aa13.12□□□□□ -0.31
TRIM28-204ENST00000594806 HCG22E2RYF7 251 aa13.11□□□□□ -0.31
TRIM28-204ENST00000594806 HRES1P13985 223 aa13.11□□□□□ -0.31
TRIM28-204ENST00000594806 RBM12B-AS1Q9P1G2 102 aa13.11□□□□□ -0.31
TRIM28-204ENST00000594806 MPLKIPQ8TAP9 179 aa13.09□□□□□ -0.31
TRIM28-204ENST00000594806 ATP5EP2Q5VTU8 51 aa13.03□□□□□ -0.32
TRIM28-204ENST00000594806 FLGP20930 4061 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-204ENST00000594806 FAM236DA0A1B0GTK5 79 aa13.02□□□□□ -0.33
TRIM28-204ENST00000594806 M0R2T5 61 aa13.02□□□□□ -0.33
TRIM28-204ENST00000594806 FAM236CP0DP71 79 aa13.02□□□□□ -0.33
TRIM28-204ENST00000594806 Q5W150 140 aa12.95□□□□□ -0.34
TRIM28-204ENST00000594806 TP53AIP1Q9HCN2 124 aa12.92□□□□□ -0.34
TRIM28-204ENST00000594806 J3QR89 54 aa12.91□□□□□ -0.34
TRIM28-204ENST00000594806 LINC00643Q86TS7 51 aa12.9□□□□□ -0.34
TRIM28-204ENST00000594806 KRTAP10-6P60371 365 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-204ENST00000594806 C7orf65Q6ZTY9 151 aa12.89□□□□□ -0.35
TRIM28-204ENST00000594806 LORP23490 312 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-204ENST00000594806 IGKV2D-30A0A075B6S6 120 aa12.85□□□□□ -0.35
TRIM28-204ENST00000594806 IGKV2-30P06310 120 aa12.85□□□□□ -0.35
TRIM28-204ENST00000594806 HIST1H4AP62805 103 aaKnown RBP12.82□□□□□ -0.36
TRIM28-204ENST00000594806 KRTAP9-2Q9BYQ4 174 aa12.75□□□□□ -0.37
TRIM28-204ENST00000594806 LCE2DQ5TA82 110 aaPredicted RBP12.69□□□□□ -0.38
TRIM28-204ENST00000594806 A0A087WVE0 104 aa12.63□□□□□ -0.39
TRIM28-204ENST00000594806 TRAV22A0A0B4J277 110 aa12.63□□□□□ -0.39
TRIM28-204ENST00000594806 H1FX-AS1Q4G0G2 97 aa12.63□□□□□ -0.39
TRIM28-204ENST00000594806 UQCRQO14949 82 aa12.62□□□□□ -0.39
TRIM28-204ENST00000594806 C4orf26Q17RF5 130 aa12.58□□□□□ -0.4
TRIM28-204ENST00000594806 K7ERU9 68 aa12.56□□□□□ -0.4
TRIM28-204ENST00000594806 KRTAP9-8Q9BYQ0 159 aa12.55□□□□□ -0.4
TRIM28-204ENST00000594806 LOC101927531A0A1B0GV80 90 aa12.54□□□□□ -0.4
TRIM28-204ENST00000594806 ATOX1O00244 68 aa12.53□□□□□ -0.4
TRIM28-204ENST00000594806 CYP4F30PQ9H0H9 118 aa12.52□□□□□ -0.41
TRIM28-204ENST00000594806 H0Y9P7 68 aa12.47□□□□□ -0.41
TRIM28-204ENST00000594806 C1orf64Q8NEQ6 169 aa12.44□□□□□ -0.42
TRIM28-204ENST00000594806 IMUPQ9GZP8 106 aa12.44□□□□□ -0.42
TRIM28-204ENST00000594806 OCR1Q9BZK8 76 aa12.43□□□□□ -0.42
TRIM28-204ENST00000594806 MT2AP02795 61 aa12.4□□□□□ -0.42
TRIM28-204ENST00000594806 KRTAP3-1Q9BYR8 98 aa12.39□□□□□ -0.43
TRIM28-204ENST00000594806 SCGB1A1P11684 91 aa12.36□□□□□ -0.43
TRIM28-204ENST00000594806 MP68P56378 58 aa12.36□□□□□ -0.43
TRIM28-204ENST00000594806 C5orf47Q569G3 176 aa12.35□□□□□ -0.43
TRIM28-204ENST00000594806 LINC00208Q96KT6 92 aa12.31□□□□□ -0.44
TRIM28-204ENST00000594806 MT-ATP8P03928 68 aa12.3□□□□□ -0.44
TRIM28-204ENST00000594806 KRTAP10-10P60014 251 aa12.3□□□□□ -0.44
TRIM28-204ENST00000594806 MT1FP04733 61 aa12.29□□□□□ -0.44
TRIM28-204ENST00000594806 S4R3F8 94 aa12.28□□□□□ -0.44
TRIM28-204ENST00000594806 H3BPC8 53 aa12.27□□□□□ -0.45
TRIM28-204ENST00000594806 KRTAP9-6A0A140TA67 174 aa12.19□□□□□ -0.46
TRIM28-204ENST00000594806 CSAG1Q6PB30 78 aa12.17□□□□□ -0.46
TRIM28-204ENST00000594806 LCA10Q71F78 164 aa12.17□□□□□ -0.46
TRIM28-204ENST00000594806 SMIM20Q8N5G0 67 aa12.17□□□□□ -0.46
TRIM28-204ENST00000594806 KRTAP9-3Q9BYQ3 159 aa12.15□□□□□ -0.46
TRIM28-204ENST00000594806 A8MUN3 132 aa12.14□□□□□ -0.47
TRIM28-204ENST00000594806 KLKP1Q107X0 134 aa12.14□□□□□ -0.47
TRIM28-204ENST00000594806 CRCT1Q9UGL9 99 aa12.14□□□□□ -0.47
TRIM28-204ENST00000594806 FAM236AA0A1B0GUQ0 79 aa12.13□□□□□ -0.47
TRIM28-204ENST00000594806 FAM236BA0A1B0GV22 79 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms