RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 DEFB116Q30KQ4 102 aa7.71□□□□□ -1.18
SS18-212ENST00000579061 FLGP20930 4061 aaPredicted RBP7.71□□□□□ -1.18
SS18-212ENST00000579061 KRTAP16-1A8MUX0 517 aa7.7□□□□□ -1.18
SS18-212ENST00000579061 TRBV20-1A0A075B6N2 111 aa7.69□□□□□ -1.18
SS18-212ENST00000579061 A0A1B0GW54 56 aa7.68□□□□□ -1.18
SS18-212ENST00000579061 J3KT08 172 aa7.67□□□□□ -1.18
SS18-212ENST00000579061 PDE6GP18545 87 aa7.67□□□□□ -1.18
SS18-212ENST00000579061 Q6ZQT0 140 aa7.67□□□□□ -1.18
SS18-212ENST00000579061 GTF2H5Q6ZYL4 71 aa7.67□□□□□ -1.18
SS18-212ENST00000579061 SPCS1Q9Y6A9 102 aa7.67□□□□□ -1.18
SS18-212ENST00000579061 LOC110117498A0A087WWA1 95 aa7.66□□□□□ -1.18
SS18-212ENST00000579061 IGHV6-1A0A0B4J1U7 121 aa7.66□□□□□ -1.18
SS18-212ENST00000579061 C8orf87E5RJ46 101 aa7.66□□□□□ -1.18
SS18-212ENST00000579061 NOTCH2NLQ7Z3S9 236 aa7.66□□□□□ -1.18
SS18-212ENST00000579061 A0A1B0GVX0 72 aa7.65□□□□□ -1.18
SS18-212ENST00000579061 M0R2T5 61 aa7.63□□□□□ -1.19
SS18-212ENST00000579061 LORP23490 312 aaPredicted RBP7.63□□□□□ -1.19
SS18-212ENST00000579061 KRTAP10-6P60371 365 aaPredicted RBP7.63□□□□□ -1.19
SS18-212ENST00000579061 K7EP34 96 aa7.62□□□□□ -1.19
SS18-212ENST00000579061 A0A1B0GV90 55 aa7.61□□□□□ -1.19
SS18-212ENST00000579061 NDUFB1O75438 58 aa7.59□□□□□ -1.19
SS18-212ENST00000579061 C14orf132Q9NPU4 83 aa7.59□□□□□ -1.19
SS18-212ENST00000579061 H3BT86 120 aa7.57□□□□□ -1.2
SS18-212ENST00000579061 KRTAP9-6A0A140TA67 174 aa7.55□□□□□ -1.2
SS18-212ENST00000579061 A8MWP4 228 aa7.55□□□□□ -1.2
SS18-212ENST00000579061 Q8N9P0 234 aaPredicted RBP7.53□□□□□ -1.2
SS18-212ENST00000579061 F8W1H4 67 aa7.52□□□□□ -1.21
SS18-212ENST00000579061 NREPQ16612 68 aa7.52□□□□□ -1.21
SS18-212ENST00000579061 C8orf17Q9NRJ1 99 aa7.52□□□□□ -1.21
SS18-212ENST00000579061 IGKV3D-7A0A0C4DH55 119 aa7.51□□□□□ -1.21
SS18-212ENST00000579061 HRES1P13985 223 aa7.51□□□□□ -1.21
SS18-212ENST00000579061 MPLKIPQ8TAP9 179 aa7.51□□□□□ -1.21
SS18-212ENST00000579061 ZCCHC13Q8WW36 166 aaKnown RBP7.51□□□□□ -1.21
SS18-212ENST00000579061 MTURNQ8N3F0 131 aa7.5□□□□□ -1.21
SS18-212ENST00000579061 RBM12B-AS1Q9P1G2 102 aa7.49□□□□□ -1.21
SS18-212ENST00000579061 PRR15Q8IV56 129 aa7.48□□□□□ -1.21
SS18-212ENST00000579061 FAM236DA0A1B0GTK5 79 aa7.47□□□□□ -1.21
SS18-212ENST00000579061 FAM236CP0DP71 79 aa7.47□□□□□ -1.21
SS18-212ENST00000579061 Q6ZVQ6 151 aa7.45□□□□□ -1.22
SS18-212ENST00000579061 PRO0461Q9UI25 63 aa7.45□□□□□ -1.22
SS18-212ENST00000579061 SMCPP49901 116 aaPredicted RBP7.42□□□□□ -1.22
SS18-212ENST00000579061 SPINK7P58062 85 aa7.42□□□□□ -1.22
SS18-212ENST00000579061 TMEM254Q8TBM7 123 aa7.42□□□□□ -1.22
SS18-212ENST00000579061 CRCT1Q9UGL9 99 aa7.42□□□□□ -1.22
SS18-212ENST00000579061 MMP24-AS1A0A0U1RRL7 71 aa7.41□□□□□ -1.22
SS18-212ENST00000579061 ETDBQ3ZM63 59 aa7.4□□□□□ -1.22
SS18-212ENST00000579061 MRPL34Q9BQ48 92 aaKnown RBP7.4□□□□□ -1.22
SS18-212ENST00000579061 K7EQZ3 153 aa7.38□□□□□ -1.23
SS18-212ENST00000579061 BPY2O14599 106 aa7.38□□□□□ -1.23
SS18-212ENST00000579061 KRTAP9-8Q9BYQ0 159 aa7.38□□□□□ -1.23
SS18-212ENST00000579061 hDV103S1A0JD37 113 aa7.37□□□□□ -1.23
SS18-212ENST00000579061 J3QR89 54 aa7.32□□□□□ -1.24
SS18-212ENST00000579061 FSIP2Q5CZC0 6907 aa7.3□□□□□ -1.24
SS18-212ENST00000579061 NDUFS5O43920 106 aa7.3□□□□□ -1.24
SS18-212ENST00000579061 WFDC13Q8IUB5 93 aa7.3□□□□□ -1.24
SS18-212ENST00000579061 UBL5Q9BZL1 73 aa7.28□□□□□ -1.24
SS18-212ENST00000579061 MT2AP02795 61 aa7.27□□□□□ -1.25
SS18-212ENST00000579061 CASC2Q6XLA1 102 aa7.27□□□□□ -1.25
SS18-212ENST00000579061 LINC00846Q9NV44 126 aa7.27□□□□□ -1.25
SS18-212ENST00000579061 Q8N9L7 120 aa7.26□□□□□ -1.25
SS18-212ENST00000579061 K7ERU9 68 aa7.24□□□□□ -1.25
SS18-212ENST00000579061 ACYP1P07311 99 aa7.24□□□□□ -1.25
SS18-212ENST00000579061 Q5W150 140 aa7.22□□□□□ -1.25
SS18-212ENST00000579061 HCG22E2RYF7 251 aa7.21□□□□□ -1.26
SS18-212ENST00000579061 C7orf65Q6ZTY9 151 aa7.21□□□□□ -1.26
SS18-212ENST00000579061 FAM240AA0A1B0GVK7 77 aa7.2□□□□□ -1.26
SS18-212ENST00000579061 MT1FP04733 61 aa7.2□□□□□ -1.26
SS18-212ENST00000579061 CXCL6P80162 114 aa7.2□□□□□ -1.26
SS18-212ENST00000579061 IGKV2D-30A0A075B6S6 120 aa7.19□□□□□ -1.26
SS18-212ENST00000579061 IGKV2-30P06310 120 aa7.19□□□□□ -1.26
SS18-212ENST00000579061 KRTAP10-10P60014 251 aa7.18□□□□□ -1.26
SS18-212ENST00000579061 H1FX-AS1Q4G0G2 97 aa7.17□□□□□ -1.26
SS18-212ENST00000579061 KRTAP9-3Q9BYQ3 159 aa7.15□□□□□ -1.26
SS18-212ENST00000579061 LCE2BO14633 110 aa7.09□□□□□ -1.27
SS18-212ENST00000579061 TP53AIP1Q9HCN2 124 aa7.09□□□□□ -1.27
SS18-212ENST00000579061 USH2AO75445 5202 aa7.09□□□□□ -1.28
SS18-212ENST00000579061 LINC00643Q86TS7 51 aa7.08□□□□□ -1.28
SS18-212ENST00000579061 C4orf26Q17RF5 130 aa7.06□□□□□ -1.28
SS18-212ENST00000579061 ATP5EP2Q5VTU8 51 aa7.06□□□□□ -1.28
SS18-212ENST00000579061 SSPOA2VEC9 5147 aa7.01□□□□□ -1.29
SS18-212ENST00000579061 HIST1H4AP62805 103 aaKnown RBP6.97□□□□□ -1.29
SS18-212ENST00000579061 C1orf64Q8NEQ6 169 aa6.96□□□□□ -1.3
SS18-212ENST00000579061 KRTAP3-1Q9BYR8 98 aa6.96□□□□□ -1.3
SS18-212ENST00000579061 KRTAP19-1Q8IUB9 90 aa6.95□□□□□ -1.3
SS18-212ENST00000579061 MT-ATP8P03928 68 aa6.93□□□□□ -1.3
SS18-212ENST00000579061 IMUPQ9GZP8 106 aa6.92□□□□□ -1.3
SS18-212ENST00000579061 S4R3F8 94 aa6.92□□□□□ -1.3
SS18-212ENST00000579061 TRAV22A0A0B4J277 110 aa6.91□□□□□ -1.3
SS18-212ENST00000579061 CYP4F30PQ9H0H9 118 aa6.91□□□□□ -1.3
SS18-212ENST00000579061 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.89□□□□□ -1.31
SS18-212ENST00000579061 C5orf47Q569G3 176 aa6.89□□□□□ -1.31
SS18-212ENST00000579061 FCGBPQ9Y6R7 5405 aaPredicted RBP6.88□□□□□ -1.31
SS18-212ENST00000579061 LOC101927531A0A1B0GV80 90 aa6.88□□□□□ -1.31
SS18-212ENST00000579061 CSAG1Q6PB30 78 aa6.88□□□□□ -1.31
SS18-212ENST00000579061 KRTAP19-6Q3LI70 58 aa6.87□□□□□ -1.31
SS18-212ENST00000579061 UQCRQO14949 82 aa6.86□□□□□ -1.31
SS18-212ENST00000579061 LCA10Q71F78 164 aa6.86□□□□□ -1.31
SS18-212ENST00000579061 A0A087WVE0 104 aa6.84□□□□□ -1.31
SS18-212ENST00000579061 ATOX1O00244 68 aa6.83□□□□□ -1.32
SS18-212ENST00000579061 SCGB1A1P11684 91 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 138.5 ms