RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 Q8N9P0 234 aaPredicted RBP8.38□□□□□ -1.07
CLK3-221ENST00000568139 TMEM256-PLSCR3K7ERE1 68 aa8.37□□□□□ -1.07
CLK3-221ENST00000568139 DNAL4O96015 105 aa8.37□□□□□ -1.07
CLK3-221ENST00000568139 CEND1Q8N111 149 aa8.37□□□□□ -1.07
CLK3-221ENST00000568139 S100A6P06703 90 aa8.35□□□□□ -1.07
CLK3-221ENST00000568139 TMEM238LA0A1B0GVL6 79 aa8.34□□□□□ -1.07
CLK3-221ENST00000568139 A6NJY4 79 aa8.34□□□□□ -1.07
CLK3-221ENST00000568139 WFDC13Q8IUB5 93 aa8.33□□□□□ -1.08
CLK3-221ENST00000568139 FXYD2P54710 66 aa8.32□□□□□ -1.08
CLK3-221ENST00000568139 UBE2V1Q13404 147 aa8.31□□□□□ -1.08
CLK3-221ENST00000568139 SPATA45Q537H7 98 aa8.31□□□□□ -1.08
CLK3-221ENST00000568139 PAM16Q9Y3D7 125 aa8.31□□□□□ -1.08
CLK3-221ENST00000568139 J3KT08 172 aa8.29□□□□□ -1.08
CLK3-221ENST00000568139 VPS25Q9BRG1 176 aa8.29□□□□□ -1.08
CLK3-221ENST00000568139 PSMB2P49721 201 aa8.25□□□□□ -1.09
CLK3-221ENST00000568139 COX6CP09669 75 aa8.24□□□□□ -1.09
CLK3-221ENST00000568139 RBM3P98179 157 aaKnown RBP8.24□□□□□ -1.09
CLK3-221ENST00000568139 VAMP8Q9BV40 100 aa8.23□□□□□ -1.09
CLK3-221ENST00000568139 NDUFB1O75438 58 aa8.22□□□□□ -1.09
CLK3-221ENST00000568139 C21orf62-AS1Q17RA5 79 aa8.22□□□□□ -1.09
CLK3-221ENST00000568139 DSCR8Q96T75 97 aa8.22□□□□□ -1.09
CLK3-221ENST00000568139 LYRM7Q5U5X0 104 aa8.21□□□□□ -1.1
CLK3-221ENST00000568139 C8orf17Q9NRJ1 99 aa8.21□□□□□ -1.1
CLK3-221ENST00000568139 H1FX-AS1Q4G0G2 97 aa8.2□□□□□ -1.1
CLK3-221ENST00000568139 Q6ZQT0 140 aa8.2□□□□□ -1.1
CLK3-221ENST00000568139 K7ERJ3 54 aa8.19□□□□□ -1.1
CLK3-221ENST00000568139 S100A1P23297 94 aa8.18□□□□□ -1.1
CLK3-221ENST00000568139 IGKV3D-7A0A0C4DH55 119 aa8.16□□□□□ -1.1
CLK3-221ENST00000568139 C9JAW5 83 aa8.16□□□□□ -1.1
CLK3-221ENST00000568139 NEBP20929 6669 aa8.15□□□□□ -1.11
CLK3-221ENST00000568139 HSD52Q0P140 79 aa8.14□□□□□ -1.11
CLK3-221ENST00000568139 Q6ZVQ6 151 aa8.14□□□□□ -1.11
CLK3-221ENST00000568139 BAALC-AS2P0C853 105 aa8.09□□□□□ -1.11
CLK3-221ENST00000568139 A0A1B0GW54 56 aa8.07□□□□□ -1.12
CLK3-221ENST00000568139 SCGB1C2P0DMR2 95 aa8.07□□□□□ -1.12
CLK3-221ENST00000568139 A6NN06 94 aa8.06□□□□□ -1.12
CLK3-221ENST00000568139 PRR15Q8IV56 129 aa8.06□□□□□ -1.12
CLK3-221ENST00000568139 MUC12Q9UKN1 5478 aa8.05□□□□□ -1.12
CLK3-221ENST00000568139 MRPL34Q9BQ48 92 aaKnown RBP8.05□□□□□ -1.12
CLK3-221ENST00000568139 TMEM254Q8TBM7 123 aa8.04□□□□□ -1.12
CLK3-221ENST00000568139 KRTAP20-1Q3LI63 56 aa8.03□□□□□ -1.12
CLK3-221ENST00000568139 MMP24-AS1A0A0U1RRL7 71 aa8.02□□□□□ -1.13
CLK3-221ENST00000568139 LOC110117498A0A087WWA1 95 aa8.01□□□□□ -1.13
CLK3-221ENST00000568139 MT1BP07438 61 aa8.01□□□□□ -1.13
CLK3-221ENST00000568139 JMJD7-PLA2G4BH0Y9G9 81 aa8□□□□□ -1.13
CLK3-221ENST00000568139 IGKV2D-30A0A075B6S6 120 aa7.97□□□□□ -1.13
CLK3-221ENST00000568139 IGKV2-30P06310 120 aa7.97□□□□□ -1.13
CLK3-221ENST00000568139 PDE6GP18545 87 aa7.97□□□□□ -1.13
CLK3-221ENST00000568139 hDV103S1A0JD37 113 aa7.96□□□□□ -1.14
CLK3-221ENST00000568139 NDUFS5O43920 106 aa7.95□□□□□ -1.14
CLK3-221ENST00000568139 NREPQ16612 68 aa7.95□□□□□ -1.14
CLK3-221ENST00000568139 Q5VV11 94 aa7.95□□□□□ -1.14
CLK3-221ENST00000568139 C7orf65Q6ZTY9 151 aa7.95□□□□□ -1.14
CLK3-221ENST00000568139 KRTAP19-8Q3LI54 63 aa7.94□□□□□ -1.14
CLK3-221ENST00000568139 PYY3Q5JQD4 70 aa7.94□□□□□ -1.14
CLK3-221ENST00000568139 KRTAP5-9P26371 169 aa7.93□□□□□ -1.14
CLK3-221ENST00000568139 Q5W150 140 aa7.93□□□□□ -1.14
CLK3-221ENST00000568139 UQCR10Q9UDW1 63 aa7.92□□□□□ -1.14
CLK3-221ENST00000568139 FAM236AA0A1B0GUQ0 79 aa7.91□□□□□ -1.14
CLK3-221ENST00000568139 FAM236BA0A1B0GV22 79 aa7.91□□□□□ -1.14
CLK3-221ENST00000568139 KRTAP10-5P60370 271 aa7.91□□□□□ -1.14
CLK3-221ENST00000568139 SPRR2GQ9BYE4 73 aa7.91□□□□□ -1.14
CLK3-221ENST00000568139 C14orf132Q9NPU4 83 aa7.91□□□□□ -1.14
CLK3-221ENST00000568139 K7EQZ3 153 aa7.9□□□□□ -1.14
CLK3-221ENST00000568139 ATXN8Q156A1 80 aa7.9□□□□□ -1.14
CLK3-221ENST00000568139 C4orf26Q17RF5 130 aa7.89□□□□□ -1.15
CLK3-221ENST00000568139 C5orf47Q569G3 176 aa7.89□□□□□ -1.15
CLK3-221ENST00000568139 NAA38Q9BRA0 125 aaKnown RBP7.8□□□□□ -1.16
CLK3-221ENST00000568139 KRTAP3-1Q9BYR8 98 aa7.8□□□□□ -1.16
CLK3-221ENST00000568139 KMT2DO14686 5537 aa7.79□□□□□ -1.16
CLK3-221ENST00000568139 CSAG1Q6PB30 78 aa7.79□□□□□ -1.16
CLK3-221ENST00000568139 S4R3F8 94 aa7.78□□□□□ -1.16
CLK3-221ENST00000568139 HCG22E2RYF7 251 aa7.76□□□□□ -1.17
CLK3-221ENST00000568139 BPY2O14599 106 aa7.76□□□□□ -1.17
CLK3-221ENST00000568139 MDN1Q9NU22 5596 aa7.74□□□□□ -1.17
CLK3-221ENST00000568139 KLKP1Q107X0 134 aa7.74□□□□□ -1.17
CLK3-221ENST00000568139 CASC2Q6XLA1 102 aa7.74□□□□□ -1.17
CLK3-221ENST00000568139 LCA10Q71F78 164 aa7.74□□□□□ -1.17
CLK3-221ENST00000568139 KRTAP2-3P0C7H8 128 aa7.73□□□□□ -1.17
CLK3-221ENST00000568139 KRTAP2-4Q9BYR9 128 aa7.73□□□□□ -1.17
CLK3-221ENST00000568139 CXCL6P80162 114 aa7.72□□□□□ -1.17
CLK3-221ENST00000568139 Q8N9L7 120 aa7.69□□□□□ -1.18
CLK3-221ENST00000568139 C1orf64Q8NEQ6 169 aa7.69□□□□□ -1.18
CLK3-221ENST00000568139 M0R143 59 aa7.68□□□□□ -1.18
CLK3-221ENST00000568139 IMUPQ9GZP8 106 aa7.65□□□□□ -1.18
CLK3-221ENST00000568139 SMCPP49901 116 aaPredicted RBP7.64□□□□□ -1.19
CLK3-221ENST00000568139 H3BT86 120 aa7.61□□□□□ -1.19
CLK3-221ENST00000568139 CRIPTQ9P021 101 aa7.6□□□□□ -1.19
CLK3-221ENST00000568139 SPRR2FQ96RM1 72 aa7.56□□□□□ -1.2
CLK3-221ENST00000568139 SPRR2EP22531 72 aa7.55□□□□□ -1.2
CLK3-221ENST00000568139 SPRR2BP35325 72 aa7.55□□□□□ -1.2
CLK3-221ENST00000568139 SPRR2AP35326 72 aa7.55□□□□□ -1.2
CLK3-221ENST00000568139 TSTD3H0UI37 97 aa7.52□□□□□ -1.21
CLK3-221ENST00000568139 TMA7Q9Y2S6 64 aaKnown RBP7.49□□□□□ -1.21
CLK3-221ENST00000568139 A0A087WVE0 104 aa7.46□□□□□ -1.22
CLK3-221ENST00000568139 KRTAP2-2Q9BYT5 123 aa7.46□□□□□ -1.22
CLK3-221ENST00000568139 KRTAP2-1Q9BYU5 128 aa7.46□□□□□ -1.22
CLK3-221ENST00000568139 TP53AIP1Q9HCN2 124 aa7.46□□□□□ -1.22
CLK3-221ENST00000568139 C9orf118A6NHY6 69 aa7.45□□□□□ -1.22
CLK3-221ENST00000568139 A0A1W2PPM0 123 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms