RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 RPL37P61927 97 aaKnown RBP11.71□□□□□ -0.53
SNX1-210ENST00000560260 IGHV6-1A0A0B4J1U7 121 aa11.7□□□□□ -0.54
SNX1-210ENST00000560260 A0A1B0GVX0 72 aa11.7□□□□□ -0.54
SNX1-210ENST00000560260 SEC61BP60468 96 aaKnown RBP11.69□□□□□ -0.54
SNX1-210ENST00000560260 LINC00846Q9NV44 126 aa11.69□□□□□ -0.54
SNX1-210ENST00000560260 KRTAP16-1A8MUX0 517 aa11.68□□□□□ -0.54
SNX1-210ENST00000560260 Q6ZVQ6 151 aa11.68□□□□□ -0.54
SNX1-210ENST00000560260 LINC00313P59037 77 aa11.66□□□□□ -0.54
SNX1-210ENST00000560260 KRTAP4-1Q9BYQ7 146 aa11.66□□□□□ -0.54
SNX1-210ENST00000560260 IGKV3D-7A0A0C4DH55 119 aa11.65□□□□□ -0.54
SNX1-210ENST00000560260 A8MWP4 228 aa11.65□□□□□ -0.54
SNX1-210ENST00000560260 PCOTHQ58A44 107 aa11.65□□□□□ -0.54
SNX1-210ENST00000560260 Q75L30 129 aa11.63□□□□□ -0.55
SNX1-210ENST00000560260 C20orf166-AS1Q96NR2 134 aa11.63□□□□□ -0.55
SNX1-210ENST00000560260 A8MUU9 505 aa11.61□□□□□ -0.55
SNX1-210ENST00000560260 C8orf87E5RJ46 101 aa11.61□□□□□ -0.55
SNX1-210ENST00000560260 NDUFB1O75438 58 aa11.6□□□□□ -0.55
SNX1-210ENST00000560260 BPY2O14599 106 aa11.59□□□□□ -0.55
SNX1-210ENST00000560260 K7EQZ3 153 aa11.58□□□□□ -0.56
SNX1-210ENST00000560260 PRR15Q8IV56 129 aa11.58□□□□□ -0.56
SNX1-210ENST00000560260 UBL5Q9BZL1 73 aa11.57□□□□□ -0.56
SNX1-210ENST00000560260 C8orf17Q9NRJ1 99 aa11.57□□□□□ -0.56
SNX1-210ENST00000560260 MMP24-AS1A0A0U1RRL7 71 aa11.52□□□□□ -0.57
SNX1-210ENST00000560260 Q8N9L7 120 aa11.52□□□□□ -0.57
SNX1-210ENST00000560260 FAT4Q6V0I7 4981 aa11.51□□□□□ -0.57
SNX1-210ENST00000560260 FAM240AA0A1B0GVK7 77 aa11.48□□□□□ -0.57
SNX1-210ENST00000560260 ATP11AUNQ6ZP68 121 aa11.48□□□□□ -0.57
SNX1-210ENST00000560260 ACYP1P07311 99 aa11.45□□□□□ -0.58
SNX1-210ENST00000560260 Q8N9P0 234 aaPredicted RBP11.43□□□□□ -0.58
SNX1-210ENST00000560260 TMEM254Q8TBM7 123 aa11.4□□□□□ -0.58
SNX1-210ENST00000560260 hDV103S1A0JD37 113 aa11.38□□□□□ -0.59
SNX1-210ENST00000560260 CXCL6P80162 114 aa11.38□□□□□ -0.59
SNX1-210ENST00000560260 MRPL34Q9BQ48 92 aaKnown RBP11.38□□□□□ -0.59
SNX1-210ENST00000560260 WFDC13Q8IUB5 93 aa11.36□□□□□ -0.59
SNX1-210ENST00000560260 ZCCHC13Q8WW36 166 aaKnown RBP11.33□□□□□ -0.6
SNX1-210ENST00000560260 KRTAP19-2Q3LHN2 52 aa11.32□□□□□ -0.6
SNX1-210ENST00000560260 CASC2Q6XLA1 102 aa11.32□□□□□ -0.6
SNX1-210ENST00000560260 HCG22E2RYF7 251 aa11.29□□□□□ -0.6
SNX1-210ENST00000560260 A0A0U1RQV1 116 aa11.28□□□□□ -0.6
SNX1-210ENST00000560260 ATP5EP2Q5VTU8 51 aa11.27□□□□□ -0.61
SNX1-210ENST00000560260 J3QR89 54 aa11.25□□□□□ -0.61
SNX1-210ENST00000560260 NDUFS5O43920 106 aa11.24□□□□□ -0.61
SNX1-210ENST00000560260 LCE2CQ5TA81 110 aa11.24□□□□□ -0.61
SNX1-210ENST00000560260 LINC00643Q86TS7 51 aa11.24□□□□□ -0.61
SNX1-210ENST00000560260 Q5W150 140 aa11.17□□□□□ -0.62
SNX1-210ENST00000560260 LCE2AQ5TA79 106 aaPredicted RBP11.15□□□□□ -0.62
SNX1-210ENST00000560260 HRES1P13985 223 aa11.14□□□□□ -0.63
SNX1-210ENST00000560260 HIST1H4AP62805 103 aaKnown RBP11.14□□□□□ -0.63
SNX1-210ENST00000560260 A0A087WVE0 104 aa11.11□□□□□ -0.63
SNX1-210ENST00000560260 SPINK7P58062 85 aa11.11□□□□□ -0.63
SNX1-210ENST00000560260 K7ERU9 68 aa11.09□□□□□ -0.63
SNX1-210ENST00000560260 MPLKIPQ8TAP9 179 aa11.08□□□□□ -0.64
SNX1-210ENST00000560260 FLGP20930 4061 aaPredicted RBP11.05□□□□□ -0.64
SNX1-210ENST00000560260 COX6B2Q6YFQ2 88 aa11.05□□□□□ -0.64
SNX1-210ENST00000560260 MT1HP80294 61 aa11.04□□□□□ -0.64
SNX1-210ENST00000560260 TP53AIP1Q9HCN2 124 aa11□□□□□ -0.65
SNX1-210ENST00000560260 IGKV2D-30A0A075B6S6 120 aa10.98□□□□□ -0.65
SNX1-210ENST00000560260 IGKV2-30P06310 120 aa10.98□□□□□ -0.65
SNX1-210ENST00000560260 C7orf65Q6ZTY9 151 aa10.95□□□□□ -0.66
SNX1-210ENST00000560260 MT-ATP8P03928 68 aa10.94□□□□□ -0.66
SNX1-210ENST00000560260 RBM12B-AS1Q9P1G2 102 aa10.94□□□□□ -0.66
SNX1-210ENST00000560260 FAM236DA0A1B0GTK5 79 aa10.9□□□□□ -0.66
SNX1-210ENST00000560260 FAM236CP0DP71 79 aa10.9□□□□□ -0.66
SNX1-210ENST00000560260 TRAV22A0A0B4J277 110 aa10.85□□□□□ -0.67
SNX1-210ENST00000560260 UQCRQO14949 82 aa10.84□□□□□ -0.67
SNX1-210ENST00000560260 OCR1Q9BZK8 76 aa10.84□□□□□ -0.67
SNX1-210ENST00000560260 IMUPQ9GZP8 106 aa10.84□□□□□ -0.67
SNX1-210ENST00000560260 H0Y9P7 68 aa10.79□□□□□ -0.68
SNX1-210ENST00000560260 M0R2T5 61 aa10.77□□□□□ -0.69
SNX1-210ENST00000560260 C4orf26Q17RF5 130 aa10.76□□□□□ -0.69
SNX1-210ENST00000560260 CYP4F30PQ9H0H9 118 aa10.75□□□□□ -0.69
SNX1-210ENST00000560260 KRTAP10-6P60371 365 aaPredicted RBP10.74□□□□□ -0.69
SNX1-210ENST00000560260 LOC101927531A0A1B0GV80 90 aa10.73□□□□□ -0.69
SNX1-210ENST00000560260 LORP23490 312 aaPredicted RBP10.71□□□□□ -0.69
SNX1-210ENST00000560260 FAM236AA0A1B0GUQ0 79 aa10.7□□□□□ -0.7
SNX1-210ENST00000560260 FAM236BA0A1B0GV22 79 aa10.7□□□□□ -0.7
SNX1-210ENST00000560260 ATOX1O00244 68 aa10.7□□□□□ -0.7
SNX1-210ENST00000560260 SCGB1A1P11684 91 aa10.69□□□□□ -0.7
SNX1-210ENST00000560260 KRTAP3-1Q9BYR8 98 aa10.66□□□□□ -0.7
SNX1-210ENST00000560260 H1FX-AS1Q4G0G2 97 aa10.65□□□□□ -0.7
SNX1-210ENST00000560260 C1orf64Q8NEQ6 169 aa10.65□□□□□ -0.7
SNX1-210ENST00000560260 LINC00208Q96KT6 92 aa10.64□□□□□ -0.71
SNX1-210ENST00000560260 MP68P56378 58 aa10.61□□□□□ -0.71
SNX1-210ENST00000560260 C5orf47Q569G3 176 aa10.61□□□□□ -0.71
SNX1-210ENST00000560260 KLKP1Q107X0 134 aa10.57□□□□□ -0.72
SNX1-210ENST00000560260 TRAV7A0A075B6U4 112 aa10.54□□□□□ -0.72
SNX1-210ENST00000560260 H3BPC8 53 aa10.53□□□□□ -0.72
SNX1-210ENST00000560260 SMIM20Q8N5G0 67 aa10.52□□□□□ -0.73
SNX1-210ENST00000560260 KRTAP9-8Q9BYQ0 159 aa10.52□□□□□ -0.73
SNX1-210ENST00000560260 MT2AP02795 61 aa10.43□□□□□ -0.74
SNX1-210ENST00000560260 S4R3F8 94 aa10.42□□□□□ -0.74
SNX1-210ENST00000560260 KRTAP9-2Q9BYQ4 174 aa10.39□□□□□ -0.75
SNX1-210ENST00000560260 LCA10Q71F78 164 aa10.38□□□□□ -0.75
SNX1-210ENST00000560260 MT1FP04733 61 aa10.37□□□□□ -0.75
SNX1-210ENST00000560260 LCE2DQ5TA82 110 aaPredicted RBP10.36□□□□□ -0.75
SNX1-210ENST00000560260 SERP2Q8N6R1 65 aa10.36□□□□□ -0.75
SNX1-210ENST00000560260 KRTAP3-3Q9BYR6 98 aa10.33□□□□□ -0.76
SNX1-210ENST00000560260 SNURFQ9Y675 71 aa10.32□□□□□ -0.76
SNX1-210ENST00000560260 A8MUN3 132 aa10.31□□□□□ -0.76
SNX1-210ENST00000560260 C20orf197Q8N268 126 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms