RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 SCGB1C2P0DMR2 95 aa7.32□□□□□ -1.24
SHMT2-235ENST00000557740 MPLKIPQ8TAP9 179 aa7.32□□□□□ -1.24
SHMT2-235ENST00000557740 A0A1B0GVX0 72 aa7.31□□□□□ -1.24
SHMT2-235ENST00000557740 M0R143 59 aa7.31□□□□□ -1.24
SHMT2-235ENST00000557740 RBM3P98179 157 aaKnown RBP7.31□□□□□ -1.24
SHMT2-235ENST00000557740 DSCR8Q96T75 97 aa7.31□□□□□ -1.24
SHMT2-235ENST00000557740 MT2AP02795 61 aa7.29□□□□□ -1.24
SHMT2-235ENST00000557740 BATFQ16520 125 aa7.29□□□□□ -1.24
SHMT2-235ENST00000557740 C21orf62-AS1Q17RA5 79 aa7.28□□□□□ -1.24
SHMT2-235ENST00000557740 J3KT08 172 aa7.27□□□□□ -1.25
SHMT2-235ENST00000557740 MTURNQ8N3F0 131 aa7.26□□□□□ -1.25
SHMT2-235ENST00000557740 USH2AO75445 5202 aa7.26□□□□□ -1.25
SHMT2-235ENST00000557740 C9JAW5 83 aa7.25□□□□□ -1.25
SHMT2-235ENST00000557740 BAALC-AS2P0C853 105 aa7.25□□□□□ -1.25
SHMT2-235ENST00000557740 ZCCHC13Q8WW36 166 aaKnown RBP7.25□□□□□ -1.25
SHMT2-235ENST00000557740 MT1FP04733 61 aa7.23□□□□□ -1.25
SHMT2-235ENST00000557740 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.22□□□□□ -1.25
SHMT2-235ENST00000557740 NDUFB1O75438 58 aa7.22□□□□□ -1.25
SHMT2-235ENST00000557740 KRTAP10-10P60014 251 aa7.22□□□□□ -1.25
SHMT2-235ENST00000557740 SSPOA2VEC9 5147 aa7.22□□□□□ -1.25
SHMT2-235ENST00000557740 Q6ZQT0 140 aa7.21□□□□□ -1.26
SHMT2-235ENST00000557740 SPINK7P58062 85 aa7.2□□□□□ -1.26
SHMT2-235ENST00000557740 KRTAP9-7A8MTY7 169 aa7.18□□□□□ -1.26
SHMT2-235ENST00000557740 COL5A1-AS1Q5SY13 56 aa7.18□□□□□ -1.26
SHMT2-235ENST00000557740 LYRM7Q5U5X0 104 aa7.18□□□□□ -1.26
SHMT2-235ENST00000557740 JMJD7-PLA2G4BH0Y9G9 81 aa7.17□□□□□ -1.26
SHMT2-235ENST00000557740 ATXN8Q156A1 80 aa7.17□□□□□ -1.26
SHMT2-235ENST00000557740 Q8N9P0 234 aaPredicted RBP7.17□□□□□ -1.26
SHMT2-235ENST00000557740 A8MWP4 228 aa7.16□□□□□ -1.26
SHMT2-235ENST00000557740 LCE2BO14633 110 aa7.16□□□□□ -1.26
SHMT2-235ENST00000557740 KRTAP9-3Q9BYQ3 159 aa7.16□□□□□ -1.26
SHMT2-235ENST00000557740 C8orf17Q9NRJ1 99 aa7.16□□□□□ -1.26
SHMT2-235ENST00000557740 TAX1BP3O14907 124 aa7.15□□□□□ -1.26
SHMT2-235ENST00000557740 LOC110117498A0A087WWA1 95 aa7.14□□□□□ -1.27
SHMT2-235ENST00000557740 A0A1B0GW54 56 aa7.14□□□□□ -1.27
SHMT2-235ENST00000557740 NAA38Q9BRA0 125 aaKnown RBP7.14□□□□□ -1.27
SHMT2-235ENST00000557740 PDE6GP18545 87 aa7.13□□□□□ -1.27
SHMT2-235ENST00000557740 WFDC13Q8IUB5 93 aa7.13□□□□□ -1.27
SHMT2-235ENST00000557740 IGKV3D-7A0A0C4DH55 119 aa7.12□□□□□ -1.27
SHMT2-235ENST00000557740 KRTAP19-1Q8IUB9 90 aa7.12□□□□□ -1.27
SHMT2-235ENST00000557740 FCGBPQ9Y6R7 5405 aaPredicted RBP7.11□□□□□ -1.27
SHMT2-235ENST00000557740 C9orf118A6NHY6 69 aa7.11□□□□□ -1.27
SHMT2-235ENST00000557740 Q6ZVQ6 151 aa7.11□□□□□ -1.27
SHMT2-235ENST00000557740 C14orf132Q9NPU4 83 aa7.11□□□□□ -1.27
SHMT2-235ENST00000557740 A0A1W2PPM0 123 aa7.07□□□□□ -1.28
SHMT2-235ENST00000557740 NREPQ16612 68 aa7.07□□□□□ -1.28
SHMT2-235ENST00000557740 PRR15Q8IV56 129 aa7.07□□□□□ -1.28
SHMT2-235ENST00000557740 TMEM254Q8TBM7 123 aa7.04□□□□□ -1.28
SHMT2-235ENST00000557740 MRPL34Q9BQ48 92 aaKnown RBP7.03□□□□□ -1.28
SHMT2-235ENST00000557740 MMP24-AS1A0A0U1RRL7 71 aa7.02□□□□□ -1.29
SHMT2-235ENST00000557740 LINC00846Q9NV44 126 aa7.02□□□□□ -1.29
SHMT2-235ENST00000557740 SPCS1Q9Y6A9 102 aa7.02□□□□□ -1.29
SHMT2-235ENST00000557740 NDUFS5O43920 106 aa7□□□□□ -1.29
SHMT2-235ENST00000557740 A0A1B0GV90 55 aa6.99□□□□□ -1.29
SHMT2-235ENST00000557740 hDV103S1A0JD37 113 aa6.99□□□□□ -1.29
SHMT2-235ENST00000557740 K7EP34 96 aa6.99□□□□□ -1.29
SHMT2-235ENST00000557740 K7EQZ3 153 aa6.98□□□□□ -1.29
SHMT2-235ENST00000557740 H1FX-AS1Q4G0G2 97 aa6.97□□□□□ -1.29
SHMT2-235ENST00000557740 GTF2H5Q6ZYL4 71 aa6.96□□□□□ -1.3
SHMT2-235ENST00000557740 KRTAP19-6Q3LI70 58 aa6.95□□□□□ -1.3
SHMT2-235ENST00000557740 IGKV2D-30A0A075B6S6 120 aa6.94□□□□□ -1.3
SHMT2-235ENST00000557740 H3BT86 120 aa6.94□□□□□ -1.3
SHMT2-235ENST00000557740 IGKV2-30P06310 120 aa6.94□□□□□ -1.3
SHMT2-235ENST00000557740 BPY2O14599 106 aa6.93□□□□□ -1.3
SHMT2-235ENST00000557740 C7orf65Q6ZTY9 151 aa6.92□□□□□ -1.3
SHMT2-235ENST00000557740 Q5W150 140 aa6.87□□□□□ -1.31
SHMT2-235ENST00000557740 PRO0461Q9UI25 63 aa6.87□□□□□ -1.31
SHMT2-235ENST00000557740 CASC2Q6XLA1 102 aa6.86□□□□□ -1.31
SHMT2-235ENST00000557740 Q8N9L7 120 aa6.86□□□□□ -1.31
SHMT2-235ENST00000557740 SMCPP49901 116 aaPredicted RBP6.85□□□□□ -1.31
SHMT2-235ENST00000557740 HCG22E2RYF7 251 aa6.84□□□□□ -1.31
SHMT2-235ENST00000557740 F8W1H4 67 aa6.84□□□□□ -1.31
SHMT2-235ENST00000557740 MACF1Q9UPN3 7388 aaKnown RBP6.83□□□□□ -1.32
SHMT2-235ENST00000557740 CXCL6P80162 114 aa6.81□□□□□ -1.32
SHMT2-235ENST00000557740 C4orf26Q17RF5 130 aa6.81□□□□□ -1.32
SHMT2-235ENST00000557740 SYNE2Q8WXH0 6885 aaKnown RBP6.81□□□□□ -1.32
SHMT2-235ENST00000557740 ETDBQ3ZM63 59 aa6.77□□□□□ -1.33
SHMT2-235ENST00000557740 C5orf47Q569G3 176 aa6.75□□□□□ -1.33
SHMT2-235ENST00000557740 UBL5Q9BZL1 73 aa6.75□□□□□ -1.33
SHMT2-235ENST00000557740 FAM236AA0A1B0GUQ0 79 aa6.74□□□□□ -1.33
SHMT2-235ENST00000557740 FAM236BA0A1B0GV22 79 aa6.74□□□□□ -1.33
SHMT2-235ENST00000557740 S4R3F8 94 aa6.71□□□□□ -1.34
SHMT2-235ENST00000557740 KRTAP6-3Q3LI67 103 aa6.7□□□□□ -1.34
SHMT2-235ENST00000557740 CSAG1Q6PB30 78 aa6.67□□□□□ -1.34
SHMT2-235ENST00000557740 C1orf64Q8NEQ6 169 aa6.67□□□□□ -1.34
SHMT2-235ENST00000557740 KRTAP3-1Q9BYR8 98 aa6.66□□□□□ -1.34
SHMT2-235ENST00000557740 LCA10Q71F78 164 aa6.63□□□□□ -1.35
SHMT2-235ENST00000557740 TP53AIP1Q9HCN2 124 aa6.63□□□□□ -1.35
SHMT2-235ENST00000557740 Q5VV11 94 aa6.62□□□□□ -1.35
SHMT2-235ENST00000557740 A6NN06 94 aa6.61□□□□□ -1.35
SHMT2-235ENST00000557740 J3QR89 54 aa6.6□□□□□ -1.35
SHMT2-235ENST00000557740 MT1BP07438 61 aa6.59□□□□□ -1.35
SHMT2-235ENST00000557740 FAM240AA0A1B0GVK7 77 aa6.58□□□□□ -1.36
SHMT2-235ENST00000557740 SPRR2GQ9BYE4 73 aa6.58□□□□□ -1.36
SHMT2-235ENST00000557740 K7ERU9 68 aa6.57□□□□□ -1.36
SHMT2-235ENST00000557740 ACYP1P07311 99 aa6.56□□□□□ -1.36
SHMT2-235ENST00000557740 KRTAP19-8Q3LI54 63 aa6.56□□□□□ -1.36
SHMT2-235ENST00000557740 KLKP1Q107X0 134 aa6.54□□□□□ -1.36
SHMT2-235ENST00000557740 CYP4F30PQ9H0H9 118 aa6.5□□□□□ -1.37
SHMT2-235ENST00000557740 TRAV22A0A0B4J277 110 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms