RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 DSCR10P59022 87 aa13.32□□□□□ -0.28
USP48-214ENST00000532737 KRTAP4-1Q9BYQ7 146 aa13.32□□□□□ -0.28
USP48-214ENST00000532737 J3KT08 172 aa13.27□□□□□ -0.29
USP48-214ENST00000532737 F8W1H4 67 aa13.26□□□□□ -0.29
USP48-214ENST00000532737 LINC00313P59037 77 aa13.26□□□□□ -0.29
USP48-214ENST00000532737 NOTCH2NLQ7Z3S9 236 aa13.26□□□□□ -0.29
USP48-214ENST00000532737 IGHV6-1A0A0B4J1U7 121 aa13.25□□□□□ -0.29
USP48-214ENST00000532737 NREPQ16612 68 aa13.25□□□□□ -0.29
USP48-214ENST00000532737 Q75L30 129 aa13.24□□□□□ -0.29
USP48-214ENST00000532737 A0A1B0GVX0 72 aa13.23□□□□□ -0.29
USP48-214ENST00000532737 C20orf166-AS1Q96NR2 134 aa13.21□□□□□ -0.29
USP48-214ENST00000532737 KRTAP16-1A8MUX0 517 aa13.2□□□□□ -0.3
USP48-214ENST00000532737 A8MUU9 505 aa13.19□□□□□ -0.3
USP48-214ENST00000532737 ETDBQ3ZM63 59 aa13.17□□□□□ -0.3
USP48-214ENST00000532737 A8MWP4 228 aa13.16□□□□□ -0.3
USP48-214ENST00000532737 C8orf87E5RJ46 101 aa13.16□□□□□ -0.3
USP48-214ENST00000532737 NDUFB1O75438 58 aa13.15□□□□□ -0.3
USP48-214ENST00000532737 IGKV3D-7A0A0C4DH55 119 aa13.13□□□□□ -0.31
USP48-214ENST00000532737 ATP11AUNQ6ZP68 121 aa13.13□□□□□ -0.31
USP48-214ENST00000532737 Q6ZVQ6 151 aa13.11□□□□□ -0.31
USP48-214ENST00000532737 A0A1B0GV90 55 aa13.09□□□□□ -0.31
USP48-214ENST00000532737 KRTAP9-6A0A140TA67 174 aa13.08□□□□□ -0.32
USP48-214ENST00000532737 LINC00846Q9NV44 126 aa13.08□□□□□ -0.32
USP48-214ENST00000532737 PRR15Q8IV56 129 aa13.07□□□□□ -0.32
USP48-214ENST00000532737 C8orf17Q9NRJ1 99 aa13.06□□□□□ -0.32
USP48-214ENST00000532737 BPY2O14599 106 aa13.05□□□□□ -0.32
USP48-214ENST00000532737 K7EQZ3 153 aa13.01□□□□□ -0.33
USP48-214ENST00000532737 UBL5Q9BZL1 73 aa13□□□□□ -0.33
USP48-214ENST00000532737 MMP24-AS1A0A0U1RRL7 71 aa12.94□□□□□ -0.34
USP48-214ENST00000532737 Q8N9L7 120 aa12.93□□□□□ -0.34
USP48-214ENST00000532737 Q8N9P0 234 aaPredicted RBP12.93□□□□□ -0.34
USP48-214ENST00000532737 KRTAP19-2Q3LHN2 52 aa12.91□□□□□ -0.34
USP48-214ENST00000532737 LCE2CQ5TA81 110 aa12.88□□□□□ -0.35
USP48-214ENST00000532737 TMEM254Q8TBM7 123 aa12.87□□□□□ -0.35
USP48-214ENST00000532737 hDV103S1A0JD37 113 aa12.85□□□□□ -0.35
USP48-214ENST00000532737 MRPL34Q9BQ48 92 aaKnown RBP12.85□□□□□ -0.35
USP48-214ENST00000532737 ZCCHC13Q8WW36 166 aaKnown RBP12.84□□□□□ -0.35
USP48-214ENST00000532737 ACYP1P07311 99 aa12.81□□□□□ -0.36
USP48-214ENST00000532737 WFDC13Q8IUB5 93 aa12.79□□□□□ -0.36
USP48-214ENST00000532737 FAM240AA0A1B0GVK7 77 aa12.78□□□□□ -0.36
USP48-214ENST00000532737 LCE2DQ5TA82 110 aaPredicted RBP12.78□□□□□ -0.36
USP48-214ENST00000532737 CXCL6P80162 114 aa12.76□□□□□ -0.37
USP48-214ENST00000532737 CASC2Q6XLA1 102 aa12.76□□□□□ -0.37
USP48-214ENST00000532737 NDUFS5O43920 106 aa12.72□□□□□ -0.37
USP48-214ENST00000532737 COX6B2Q6YFQ2 88 aa12.71□□□□□ -0.37
USP48-214ENST00000532737 HCG22E2RYF7 251 aa12.69□□□□□ -0.38
USP48-214ENST00000532737 MT1HP80294 61 aa12.66□□□□□ -0.38
USP48-214ENST00000532737 HRES1P13985 223 aa12.65□□□□□ -0.38
USP48-214ENST00000532737 SPINK7P58062 85 aa12.65□□□□□ -0.38
USP48-214ENST00000532737 Q5W150 140 aa12.6□□□□□ -0.39
USP48-214ENST00000532737 CRCT1Q9UGL9 99 aa12.6□□□□□ -0.39
USP48-214ENST00000532737 MPLKIPQ8TAP9 179 aa12.59□□□□□ -0.39
USP48-214ENST00000532737 ATP5EP2Q5VTU8 51 aa12.58□□□□□ -0.4
USP48-214ENST00000532737 LINC00643Q86TS7 51 aa12.55□□□□□ -0.4
USP48-214ENST00000532737 FSIP2Q5CZC0 6907 aa12.53□□□□□ -0.4
USP48-214ENST00000532737 J3QR89 54 aa12.52□□□□□ -0.41
USP48-214ENST00000532737 RBM12B-AS1Q9P1G2 102 aa12.51□□□□□ -0.41
USP48-214ENST00000532737 FLGP20930 4061 aaPredicted RBP12.5□□□□□ -0.41
USP48-214ENST00000532737 HIST1H4AP62805 103 aaKnown RBP12.48□□□□□ -0.41
USP48-214ENST00000532737 FAM236DA0A1B0GTK5 79 aa12.47□□□□□ -0.41
USP48-214ENST00000532737 FAM236CP0DP71 79 aa12.47□□□□□ -0.41
USP48-214ENST00000532737 IGKV2D-30A0A075B6S6 120 aa12.44□□□□□ -0.42
USP48-214ENST00000532737 IGKV2-30P06310 120 aa12.44□□□□□ -0.42
USP48-214ENST00000532737 M0R2T5 61 aa12.43□□□□□ -0.42
USP48-214ENST00000532737 TP53AIP1Q9HCN2 124 aa12.42□□□□□ -0.42
USP48-214ENST00000532737 C7orf65Q6ZTY9 151 aa12.39□□□□□ -0.43
USP48-214ENST00000532737 A0A087WVE0 104 aa12.38□□□□□ -0.43
USP48-214ENST00000532737 LORP23490 312 aaPredicted RBP12.38□□□□□ -0.43
USP48-214ENST00000532737 KRTAP10-6P60371 365 aaPredicted RBP12.35□□□□□ -0.43
USP48-214ENST00000532737 K7ERU9 68 aa12.27□□□□□ -0.45
USP48-214ENST00000532737 UQCRQO14949 82 aa12.2□□□□□ -0.46
USP48-214ENST00000532737 TRAV22A0A0B4J277 110 aa12.19□□□□□ -0.46
USP48-214ENST00000532737 C4orf26Q17RF5 130 aa12.18□□□□□ -0.46
USP48-214ENST00000532737 H1FX-AS1Q4G0G2 97 aa12.14□□□□□ -0.47
USP48-214ENST00000532737 CYP4F30PQ9H0H9 118 aa12.13□□□□□ -0.47
USP48-214ENST00000532737 MT-ATP8P03928 68 aa12.11□□□□□ -0.47
USP48-214ENST00000532737 H0Y9P7 68 aa12.1□□□□□ -0.47
USP48-214ENST00000532737 OCR1Q9BZK8 76 aa12.1□□□□□ -0.47
USP48-214ENST00000532737 LOC101927531A0A1B0GV80 90 aa12.09□□□□□ -0.47
USP48-214ENST00000532737 KRTAP9-8Q9BYQ0 159 aa12.06□□□□□ -0.48
USP48-214ENST00000532737 IMUPQ9GZP8 106 aa12.06□□□□□ -0.48
USP48-214ENST00000532737 ATOX1O00244 68 aa12.05□□□□□ -0.48
USP48-214ENST00000532737 KRTAP3-1Q9BYR8 98 aa12.05□□□□□ -0.48
USP48-214ENST00000532737 C1orf64Q8NEQ6 169 aa12.01□□□□□ -0.49
USP48-214ENST00000532737 SCGB1A1P11684 91 aa11.99□□□□□ -0.49
USP48-214ENST00000532737 LINC00208Q96KT6 92 aa11.96□□□□□ -0.49
USP48-214ENST00000532737 MT2AP02795 61 aa11.94□□□□□ -0.5
USP48-214ENST00000532737 MP68P56378 58 aa11.94□□□□□ -0.5
USP48-214ENST00000532737 C5orf47Q569G3 176 aa11.93□□□□□ -0.5
USP48-214ENST00000532737 FAM236AA0A1B0GUQ0 79 aa11.87□□□□□ -0.51
USP48-214ENST00000532737 FAM236BA0A1B0GV22 79 aa11.87□□□□□ -0.51
USP48-214ENST00000532737 MT1FP04733 61 aa11.84□□□□□ -0.51
USP48-214ENST00000532737 KLKP1Q107X0 134 aa11.84□□□□□ -0.51
USP48-214ENST00000532737 H3BPC8 53 aa11.81□□□□□ -0.52
USP48-214ENST00000532737 S4R3F8 94 aa11.81□□□□□ -0.52
USP48-214ENST00000532737 KRTAP10-10P60014 251 aa11.78□□□□□ -0.52
USP48-214ENST00000532737 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.77□□□□□ -0.53
USP48-214ENST00000532737 USH2AO75445 5202 aa11.76□□□□□ -0.53
USP48-214ENST00000532737 LCA10Q71F78 164 aa11.76□□□□□ -0.53
USP48-214ENST00000532737 SMIM20Q8N5G0 67 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms