RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 HRES1P13985 223 aa7.35□□□□□ -1.23
VPS28-215ENST00000531924 SSPOA2VEC9 5147 aa7.34□□□□□ -1.23
VPS28-215ENST00000531924 MT2AP02795 61 aa7.34□□□□□ -1.23
VPS28-215ENST00000531924 SMIM6P0DI80 62 aa7.33□□□□□ -1.24
VPS28-215ENST00000531924 C21orf62-AS1Q17RA5 79 aa7.33□□□□□ -1.24
VPS28-215ENST00000531924 MPLKIPQ8TAP9 179 aa7.33□□□□□ -1.24
VPS28-215ENST00000531924 J3KT08 172 aa7.32□□□□□ -1.24
VPS28-215ENST00000531924 KRTAP10-10P60014 251 aa7.32□□□□□ -1.24
VPS28-215ENST00000531924 UQCR10Q9UDW1 63 aa7.32□□□□□ -1.24
VPS28-215ENST00000531924 LOC105371267A0A1B0GV96 52 aa7.31□□□□□ -1.24
VPS28-215ENST00000531924 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.31□□□□□ -1.24
VPS28-215ENST00000531924 C9JAW5 83 aa7.31□□□□□ -1.24
VPS28-215ENST00000531924 NDUFB1O75438 58 aa7.3□□□□□ -1.24
VPS28-215ENST00000531924 ZCCHC13Q8WW36 166 aaKnown RBP7.3□□□□□ -1.24
VPS28-215ENST00000531924 LYRM7Q5U5X0 104 aa7.29□□□□□ -1.24
VPS28-215ENST00000531924 KRTAP9-7A8MTY7 169 aa7.28□□□□□ -1.24
VPS28-215ENST00000531924 BAALC-AS2P0C853 105 aa7.28□□□□□ -1.24
VPS28-215ENST00000531924 MT1FP04733 61 aa7.27□□□□□ -1.25
VPS28-215ENST00000531924 SPINK7P58062 85 aa7.27□□□□□ -1.25
VPS28-215ENST00000531924 Q6ZQT0 140 aa7.25□□□□□ -1.25
VPS28-215ENST00000531924 FCGBPQ9Y6R7 5405 aaPredicted RBP7.22□□□□□ -1.25
VPS28-215ENST00000531924 LCE2BO14633 110 aa7.21□□□□□ -1.26
VPS28-215ENST00000531924 KRTAP9-3Q9BYQ3 159 aa7.21□□□□□ -1.26
VPS28-215ENST00000531924 A8MWP4 228 aa7.2□□□□□ -1.26
VPS28-215ENST00000531924 JMJD7-PLA2G4BH0Y9G9 81 aa7.2□□□□□ -1.26
VPS28-215ENST00000531924 ATXN8Q156A1 80 aa7.2□□□□□ -1.26
VPS28-215ENST00000531924 Q8N9P0 234 aaPredicted RBP7.2□□□□□ -1.26
VPS28-215ENST00000531924 WFDC13Q8IUB5 93 aa7.19□□□□□ -1.26
VPS28-215ENST00000531924 KRTAP19-1Q8IUB9 90 aa7.19□□□□□ -1.26
VPS28-215ENST00000531924 C8orf17Q9NRJ1 99 aa7.19□□□□□ -1.26
VPS28-215ENST00000531924 A0A1B0GW54 56 aa7.18□□□□□ -1.26
VPS28-215ENST00000531924 PDE6GP18545 87 aa7.17□□□□□ -1.26
VPS28-215ENST00000531924 LINC00846Q9NV44 126 aa7.17□□□□□ -1.26
VPS28-215ENST00000531924 LOC110117498A0A087WWA1 95 aa7.16□□□□□ -1.26
VPS28-215ENST00000531924 TSTD3H0UI37 97 aa7.15□□□□□ -1.26
VPS28-215ENST00000531924 M0R143 59 aa7.15□□□□□ -1.26
VPS28-215ENST00000531924 Q6ZVQ6 151 aa7.15□□□□□ -1.26
VPS28-215ENST00000531924 IGKV3D-7A0A0C4DH55 119 aa7.14□□□□□ -1.27
VPS28-215ENST00000531924 NAA38Q9BRA0 125 aaKnown RBP7.14□□□□□ -1.27
VPS28-215ENST00000531924 NREPQ16612 68 aa7.13□□□□□ -1.27
VPS28-215ENST00000531924 C14orf132Q9NPU4 83 aa7.12□□□□□ -1.27
VPS28-215ENST00000531924 PRR15Q8IV56 129 aa7.1□□□□□ -1.27
VPS28-215ENST00000531924 NDUFS5O43920 106 aa7.08□□□□□ -1.28
VPS28-215ENST00000531924 TMEM254Q8TBM7 123 aa7.07□□□□□ -1.28
VPS28-215ENST00000531924 MRPL34Q9BQ48 92 aaKnown RBP7.07□□□□□ -1.28
VPS28-215ENST00000531924 MACF1Q9UPN3 7388 aaKnown RBP7.06□□□□□ -1.28
VPS28-215ENST00000531924 H1FX-AS1Q4G0G2 97 aa7.04□□□□□ -1.28
VPS28-215ENST00000531924 MMP24-AS1A0A0U1RRL7 71 aa7.03□□□□□ -1.28
VPS28-215ENST00000531924 hDV103S1A0JD37 113 aa7.03□□□□□ -1.28
VPS28-215ENST00000531924 SYNE2Q8WXH0 6885 aaKnown RBP7.03□□□□□ -1.28
VPS28-215ENST00000531924 KRTAP19-6Q3LI70 58 aa7□□□□□ -1.29
VPS28-215ENST00000531924 IGKV2D-30A0A075B6S6 120 aa6.99□□□□□ -1.29
VPS28-215ENST00000531924 K7EQZ3 153 aa6.99□□□□□ -1.29
VPS28-215ENST00000531924 IGKV2-30P06310 120 aa6.99□□□□□ -1.29
VPS28-215ENST00000531924 BATFQ16520 125 aa6.99□□□□□ -1.29
VPS28-215ENST00000531924 BPY2O14599 106 aa6.98□□□□□ -1.29
VPS28-215ENST00000531924 C7orf65Q6ZTY9 151 aa6.96□□□□□ -1.3
VPS28-215ENST00000531924 H3BT86 120 aa6.94□□□□□ -1.3
VPS28-215ENST00000531924 CASC2Q6XLA1 102 aa6.91□□□□□ -1.3
VPS28-215ENST00000531924 Q5W150 140 aa6.9□□□□□ -1.3
VPS28-215ENST00000531924 C9orf118A6NHY6 69 aa6.89□□□□□ -1.31
VPS28-215ENST00000531924 TAX1BP3O14907 124 aa6.89□□□□□ -1.31
VPS28-215ENST00000531924 PCP4L1A6NKN8 68 aa6.88□□□□□ -1.31
VPS28-215ENST00000531924 HCG22E2RYF7 251 aa6.88□□□□□ -1.31
VPS28-215ENST00000531924 A0A1W2PPM0 123 aa6.87□□□□□ -1.31
VPS28-215ENST00000531924 Q8N9L7 120 aa6.87□□□□□ -1.31
VPS28-215ENST00000531924 CXCL6P80162 114 aa6.86□□□□□ -1.31
VPS28-215ENST00000531924 C4orf26Q17RF5 130 aa6.86□□□□□ -1.31
VPS28-215ENST00000531924 COL5A1-AS1Q5SY13 56 aa6.86□□□□□ -1.31
VPS28-215ENST00000531924 FAM236AA0A1B0GUQ0 79 aa6.82□□□□□ -1.32
VPS28-215ENST00000531924 FAM236BA0A1B0GV22 79 aa6.82□□□□□ -1.32
VPS28-215ENST00000531924 C5orf47Q569G3 176 aa6.81□□□□□ -1.32
VPS28-215ENST00000531924 KRTAP6-3Q3LI67 103 aa6.78□□□□□ -1.32
VPS28-215ENST00000531924 UBL5Q9BZL1 73 aa6.78□□□□□ -1.32
VPS28-215ENST00000531924 SPCS1Q9Y6A9 102 aa6.78□□□□□ -1.32
VPS28-215ENST00000531924 S4R3F8 94 aa6.76□□□□□ -1.33
VPS28-215ENST00000531924 CSAG1Q6PB30 78 aa6.75□□□□□ -1.33
VPS28-215ENST00000531924 C1orf64Q8NEQ6 169 aa6.73□□□□□ -1.33
VPS28-215ENST00000531924 K7EP34 96 aa6.72□□□□□ -1.33
VPS28-215ENST00000531924 A6NN06 94 aa6.7□□□□□ -1.34
VPS28-215ENST00000531924 SMCPP49901 116 aaPredicted RBP6.7□□□□□ -1.34
VPS28-215ENST00000531924 Q5VV11 94 aa6.69□□□□□ -1.34
VPS28-215ENST00000531924 KRTAP3-1Q9BYR8 98 aa6.68□□□□□ -1.34
VPS28-215ENST00000531924 GTF2H5Q6ZYL4 71 aa6.67□□□□□ -1.34
VPS28-215ENST00000531924 LCA10Q71F78 164 aa6.67□□□□□ -1.34
VPS28-215ENST00000531924 TP53AIP1Q9HCN2 124 aa6.67□□□□□ -1.34
VPS28-215ENST00000531924 PRO0461Q9UI25 63 aa6.66□□□□□ -1.34
VPS28-215ENST00000531924 NEBP20929 6669 aa6.64□□□□□ -1.35
VPS28-215ENST00000531924 SPRR2GQ9BYE4 73 aa6.62□□□□□ -1.35
VPS28-215ENST00000531924 MT1BP07438 61 aa6.61□□□□□ -1.35
VPS28-215ENST00000531924 F8W1H4 67 aa6.59□□□□□ -1.35
VPS28-215ENST00000531924 KLKP1Q107X0 134 aa6.59□□□□□ -1.35
VPS28-215ENST00000531924 KRTAP19-8Q3LI54 63 aa6.59□□□□□ -1.35
VPS28-215ENST00000531924 A0A1B0GV90 55 aa6.54□□□□□ -1.36
VPS28-215ENST00000531924 IMUPQ9GZP8 106 aa6.54□□□□□ -1.36
VPS28-215ENST00000531924 CYP4F30PQ9H0H9 118 aa6.54□□□□□ -1.36
VPS28-215ENST00000531924 MUC12Q9UKN1 5478 aa6.52□□□□□ -1.37
VPS28-215ENST00000531924 KRTAP10-5P60370 271 aa6.52□□□□□ -1.37
VPS28-215ENST00000531924 CRIPTQ9P021 101 aa6.52□□□□□ -1.37
VPS28-215ENST00000531924 ETDBQ3ZM63 59 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms