RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 C8orf87E5RJ46 101 aa6.95□□□□□ -1.3
TCOF1-215ENST00000515516 RBM12B-AS1Q9P1G2 102 aa6.94□□□□□ -1.3
TCOF1-215ENST00000515516 A0A1B0GVX0 72 aa6.93□□□□□ -1.3
TCOF1-215ENST00000515516 J3KT08 172 aa6.93□□□□□ -1.3
TCOF1-215ENST00000515516 M0R143 59 aa6.91□□□□□ -1.3
TCOF1-215ENST00000515516 ATXN8Q156A1 80 aa6.91□□□□□ -1.3
TCOF1-215ENST00000515516 NDUFB1O75438 58 aa6.9□□□□□ -1.3
TCOF1-215ENST00000515516 JMJD7-PLA2G4BH0Y9G9 81 aa6.88□□□□□ -1.31
TCOF1-215ENST00000515516 Q6ZQT0 140 aa6.88□□□□□ -1.31
TCOF1-215ENST00000515516 HRES1P13985 223 aa6.86□□□□□ -1.31
TCOF1-215ENST00000515516 MTURNQ8N3F0 131 aa6.86□□□□□ -1.31
TCOF1-215ENST00000515516 A0A1B0GW54 56 aa6.85□□□□□ -1.31
TCOF1-215ENST00000515516 PDE6GP18545 87 aa6.85□□□□□ -1.31
TCOF1-215ENST00000515516 ZCCHC13Q8WW36 166 aaKnown RBP6.85□□□□□ -1.31
TCOF1-215ENST00000515516 NAA38Q9BRA0 125 aaKnown RBP6.85□□□□□ -1.31
TCOF1-215ENST00000515516 KRTAP9-8Q9BYQ0 159 aa6.84□□□□□ -1.31
TCOF1-215ENST00000515516 LOC110117498A0A087WWA1 95 aa6.83□□□□□ -1.32
TCOF1-215ENST00000515516 LYRM7Q5U5X0 104 aa6.83□□□□□ -1.32
TCOF1-215ENST00000515516 MPLKIPQ8TAP9 179 aa6.83□□□□□ -1.32
TCOF1-215ENST00000515516 A8MWP4 228 aa6.81□□□□□ -1.32
TCOF1-215ENST00000515516 SPINK7P58062 85 aa6.8□□□□□ -1.32
TCOF1-215ENST00000515516 Q8N9P0 234 aaPredicted RBP6.79□□□□□ -1.32
TCOF1-215ENST00000515516 C14orf132Q9NPU4 83 aa6.79□□□□□ -1.32
TCOF1-215ENST00000515516 C8orf17Q9NRJ1 99 aa6.79□□□□□ -1.32
TCOF1-215ENST00000515516 SMIM6P0DI80 62 aa6.78□□□□□ -1.32
TCOF1-215ENST00000515516 NREPQ16612 68 aa6.78□□□□□ -1.32
TCOF1-215ENST00000515516 IGKV3D-7A0A0C4DH55 119 aa6.76□□□□□ -1.33
TCOF1-215ENST00000515516 BATFQ16520 125 aa6.76□□□□□ -1.33
TCOF1-215ENST00000515516 TSTD3H0UI37 97 aa6.75□□□□□ -1.33
TCOF1-215ENST00000515516 MT2AP02795 61 aa6.75□□□□□ -1.33
TCOF1-215ENST00000515516 Q6ZVQ6 151 aa6.75□□□□□ -1.33
TCOF1-215ENST00000515516 PRR15Q8IV56 129 aa6.74□□□□□ -1.33
TCOF1-215ENST00000515516 KRTAP10-10P60014 251 aa6.73□□□□□ -1.33
TCOF1-215ENST00000515516 WFDC13Q8IUB5 93 aa6.7□□□□□ -1.34
TCOF1-215ENST00000515516 MT1FP04733 61 aa6.69□□□□□ -1.34
TCOF1-215ENST00000515516 TMEM254Q8TBM7 123 aa6.69□□□□□ -1.34
TCOF1-215ENST00000515516 MRPL34Q9BQ48 92 aaKnown RBP6.69□□□□□ -1.34
TCOF1-215ENST00000515516 H3BT86 120 aa6.68□□□□□ -1.34
TCOF1-215ENST00000515516 C9orf118A6NHY6 69 aa6.67□□□□□ -1.34
TCOF1-215ENST00000515516 NDUFS5O43920 106 aa6.67□□□□□ -1.34
TCOF1-215ENST00000515516 MMP24-AS1A0A0U1RRL7 71 aa6.66□□□□□ -1.34
TCOF1-215ENST00000515516 hDV103S1A0JD37 113 aa6.66□□□□□ -1.34
TCOF1-215ENST00000515516 USH2AO75445 5202 aa6.66□□□□□ -1.34
TCOF1-215ENST00000515516 A0A1W2PPM0 123 aa6.64□□□□□ -1.35
TCOF1-215ENST00000515516 BPY2O14599 106 aa6.64□□□□□ -1.35
TCOF1-215ENST00000515516 K7EQZ3 153 aa6.63□□□□□ -1.35
TCOF1-215ENST00000515516 KRTAP9-3Q9BYQ3 159 aa6.63□□□□□ -1.35
TCOF1-215ENST00000515516 TAX1BP3O14907 124 aa6.62□□□□□ -1.35
TCOF1-215ENST00000515516 LCE2BO14633 110 aa6.61□□□□□ -1.35
TCOF1-215ENST00000515516 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.58□□□□□ -1.36
TCOF1-215ENST00000515516 H1FX-AS1Q4G0G2 97 aa6.58□□□□□ -1.36
TCOF1-215ENST00000515516 SSPOA2VEC9 5147 aa6.58□□□□□ -1.36
TCOF1-215ENST00000515516 IGKV2D-30A0A075B6S6 120 aa6.57□□□□□ -1.36
TCOF1-215ENST00000515516 IGKV2-30P06310 120 aa6.57□□□□□ -1.36
TCOF1-215ENST00000515516 SPCS1Q9Y6A9 102 aa6.56□□□□□ -1.36
TCOF1-215ENST00000515516 CASC2Q6XLA1 102 aa6.55□□□□□ -1.36
TCOF1-215ENST00000515516 C7orf65Q6ZTY9 151 aa6.55□□□□□ -1.36
TCOF1-215ENST00000515516 KRTAP19-1Q8IUB9 90 aa6.55□□□□□ -1.36
TCOF1-215ENST00000515516 LINC00846Q9NV44 126 aa6.55□□□□□ -1.36
TCOF1-215ENST00000515516 LOC105371267A0A1B0GV96 52 aa6.54□□□□□ -1.36
TCOF1-215ENST00000515516 KRTAP9-7A8MTY7 169 aa6.53□□□□□ -1.36
TCOF1-215ENST00000515516 Q8N9L7 120 aa6.53□□□□□ -1.36
TCOF1-215ENST00000515516 HCG22E2RYF7 251 aa6.52□□□□□ -1.37
TCOF1-215ENST00000515516 Q5W150 140 aa6.51□□□□□ -1.37
TCOF1-215ENST00000515516 CXCL6P80162 114 aa6.5□□□□□ -1.37
TCOF1-215ENST00000515516 UBL5Q9BZL1 73 aa6.5□□□□□ -1.37
TCOF1-215ENST00000515516 FCGBPQ9Y6R7 5405 aaPredicted RBP6.48□□□□□ -1.37
TCOF1-215ENST00000515516 SMCPP49901 116 aaPredicted RBP6.47□□□□□ -1.37
TCOF1-215ENST00000515516 COL5A1-AS1Q5SY13 56 aa6.47□□□□□ -1.37
TCOF1-215ENST00000515516 C4orf26Q17RF5 130 aa6.44□□□□□ -1.38
TCOF1-215ENST00000515516 K7EP34 96 aa6.42□□□□□ -1.38
TCOF1-215ENST00000515516 KRTAP19-6Q3LI70 58 aa6.41□□□□□ -1.38
TCOF1-215ENST00000515516 PRO0461Q9UI25 63 aa6.41□□□□□ -1.38
TCOF1-215ENST00000515516 GTF2H5Q6ZYL4 71 aa6.37□□□□□ -1.39
TCOF1-215ENST00000515516 TP53AIP1Q9HCN2 124 aa6.36□□□□□ -1.39
TCOF1-215ENST00000515516 C5orf47Q569G3 176 aa6.35□□□□□ -1.39
TCOF1-215ENST00000515516 MACF1Q9UPN3 7388 aaKnown RBP6.35□□□□□ -1.39
TCOF1-215ENST00000515516 S4R3F8 94 aa6.34□□□□□ -1.39
TCOF1-215ENST00000515516 FAM236AA0A1B0GUQ0 79 aa6.33□□□□□ -1.4
TCOF1-215ENST00000515516 FAM236BA0A1B0GV22 79 aa6.33□□□□□ -1.4
TCOF1-215ENST00000515516 C1orf64Q8NEQ6 169 aa6.33□□□□□ -1.4
TCOF1-215ENST00000515516 F8W1H4 67 aa6.32□□□□□ -1.4
TCOF1-215ENST00000515516 CSAG1Q6PB30 78 aa6.31□□□□□ -1.4
TCOF1-215ENST00000515516 KRTAP3-1Q9BYR8 98 aa6.29□□□□□ -1.4
TCOF1-215ENST00000515516 ETDBQ3ZM63 59 aa6.28□□□□□ -1.4
TCOF1-215ENST00000515516 SYNE2Q8WXH0 6885 aaKnown RBP6.28□□□□□ -1.4
TCOF1-215ENST00000515516 LCA10Q71F78 164 aa6.25□□□□□ -1.41
TCOF1-215ENST00000515516 PCP4L1A6NKN8 68 aa6.24□□□□□ -1.41
TCOF1-215ENST00000515516 CYP4F30PQ9H0H9 118 aa6.21□□□□□ -1.42
TCOF1-215ENST00000515516 TRAV22A0A0B4J277 110 aa6.19□□□□□ -1.42
TCOF1-215ENST00000515516 ACYP1P07311 99 aa6.19□□□□□ -1.42
TCOF1-215ENST00000515516 Q5VV11 94 aa6.19□□□□□ -1.42
TCOF1-215ENST00000515516 LOC101927531A0A1B0GV80 90 aa6.18□□□□□ -1.42
TCOF1-215ENST00000515516 A6NN06 94 aa6.15□□□□□ -1.42
TCOF1-215ENST00000515516 HIST1H4AP62805 103 aaKnown RBP6.15□□□□□ -1.42
TCOF1-215ENST00000515516 KLKP1Q107X0 134 aa6.15□□□□□ -1.42
TCOF1-215ENST00000515516 KRTAP6-3Q3LI67 103 aa6.15□□□□□ -1.42
TCOF1-215ENST00000515516 ATP5EP2Q5VTU8 51 aa6.15□□□□□ -1.42
TCOF1-215ENST00000515516 SPRR2GQ9BYE4 73 aa6.15□□□□□ -1.42
TCOF1-215ENST00000515516 UQCRQO14949 82 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms