RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	HSD52	Q0P140	79 aa		7.55	□□□□□ -1.2
LMNA-223	ENST00000515459	CEND1	Q8N111	149 aa		7.55	□□□□□ -1.2
LMNA-223	ENST00000515459	ZCCHC13	Q8WW36	166 aa	Known RBP	7.54	□□□□□ -1.2
LMNA-223	ENST00000515459		Q8N9P0	234 aa	Predicted RBP	7.53	□□□□□ -1.2
LMNA-223	ENST00000515459	C8orf87	E5RJ46	101 aa		7.52	□□□□□ -1.21
LMNA-223	ENST00000515459	TSTD3	H0UI37	97 aa		7.52	□□□□□ -1.21
LMNA-223	ENST00000515459		A0A1B0GV72	72 aa		7.51	□□□□□ -1.21
LMNA-223	ENST00000515459		A0A1B0GVX0	72 aa		7.5	□□□□□ -1.21
LMNA-223	ENST00000515459	TRAC	P01848	142 aa		7.5	□□□□□ -1.21
LMNA-223	ENST00000515459	CCK	P06307	115 aa		7.49	□□□□□ -1.21
LMNA-223	ENST00000515459	PRO1854	Q9UHT4	67 aa		7.48	□□□□□ -1.21
LMNA-223	ENST00000515459	FXYD2	P54710	66 aa		7.47	□□□□□ -1.21
LMNA-223	ENST00000515459	WFDC13	Q8IUB5	93 aa		7.47	□□□□□ -1.21
LMNA-223	ENST00000515459	ORMDL1	Q9P0S3	153 aa		7.47	□□□□□ -1.21
LMNA-223	ENST00000515459		H3BQ85	93 aa		7.46	□□□□□ -1.22
LMNA-223	ENST00000515459		M0R143	59 aa		7.46	□□□□□ -1.22
LMNA-223	ENST00000515459	DNAL4	O96015	105 aa		7.46	□□□□□ -1.22
LMNA-223	ENST00000515459	TMEM256-PLSCR3	K7ERE1	68 aa		7.44	□□□□□ -1.22
LMNA-223	ENST00000515459	TRIAP1	O43715	76 aa		7.44	□□□□□ -1.22
LMNA-223	ENST00000515459	COX6C	P09669	75 aa		7.4	□□□□□ -1.22
LMNA-223	ENST00000515459	VPS25	Q9BRG1	176 aa		7.4	□□□□□ -1.22
LMNA-223	ENST00000515459	NEB	P20929	6669 aa		7.39	□□□□□ -1.23
LMNA-223	ENST00000515459		J3KT08	172 aa		7.38	□□□□□ -1.23
LMNA-223	ENST00000515459	PSMB2	P49721	201 aa		7.38	□□□□□ -1.23
LMNA-223	ENST00000515459	LYRM7	Q5U5X0	104 aa		7.38	□□□□□ -1.23
LMNA-223	ENST00000515459	UBE2V1	Q13404	147 aa		7.37	□□□□□ -1.23
LMNA-223	ENST00000515459		K7ERJ3	54 aa		7.36	□□□□□ -1.23
LMNA-223	ENST00000515459	NDUFB1	O75438	58 aa		7.35	□□□□□ -1.23
LMNA-223	ENST00000515459	SCGB1C2	P0DMR2	95 aa		7.34	□□□□□ -1.23
LMNA-223	ENST00000515459	RBM3	P98179	157 aa	Known RBP	7.33	□□□□□ -1.24
LMNA-223	ENST00000515459	H1FX-AS1	Q4G0G2	97 aa		7.33	□□□□□ -1.24
LMNA-223	ENST00000515459	DSCR8	Q96T75	97 aa		7.33	□□□□□ -1.24
LMNA-223	ENST00000515459	C21orf62-AS1	Q17RA5	79 aa		7.32	□□□□□ -1.24
LMNA-223	ENST00000515459	BATF	Q16520	125 aa		7.31	□□□□□ -1.24
LMNA-223	ENST00000515459	C8orf17	Q9NRJ1	99 aa		7.3	□□□□□ -1.24
LMNA-223	ENST00000515459	IGKV3D-7	A0A0C4DH55	119 aa		7.29	□□□□□ -1.24
LMNA-223	ENST00000515459		Q6ZQT0	140 aa		7.28	□□□□□ -1.24
LMNA-223	ENST00000515459	KRTAP20-1	Q3LI63	56 aa		7.27	□□□□□ -1.25
LMNA-223	ENST00000515459		A6NN06	94 aa		7.26	□□□□□ -1.25
LMNA-223	ENST00000515459		C9JAW5	83 aa		7.25	□□□□□ -1.25
LMNA-223	ENST00000515459		Q6ZVQ6	151 aa		7.25	□□□□□ -1.25
LMNA-223	ENST00000515459	ATXN8	Q156A1	80 aa		7.23	□□□□□ -1.25
LMNA-223	ENST00000515459	C9orf118	A6NHY6	69 aa		7.22	□□□□□ -1.25
LMNA-223	ENST00000515459	MUC12	Q9UKN1	5478 aa		7.22	□□□□□ -1.25
LMNA-223	ENST00000515459	PCP4L1	A6NKN8	68 aa		7.21	□□□□□ -1.26
LMNA-223	ENST00000515459	COL5A1-AS1	Q5SY13	56 aa		7.21	□□□□□ -1.26
LMNA-223	ENST00000515459	NAA38	Q9BRA0	125 aa	Known RBP	7.2	□□□□□ -1.26
LMNA-223	ENST00000515459	TAX1BP3	O14907	124 aa		7.19	□□□□□ -1.26
LMNA-223	ENST00000515459	BAALC-AS2	P0C853	105 aa		7.17	□□□□□ -1.26
LMNA-223	ENST00000515459	PRR15	Q8IV56	129 aa		7.17	□□□□□ -1.26
LMNA-223	ENST00000515459	MRPL34	Q9BQ48	92 aa	Known RBP	7.17	□□□□□ -1.26
LMNA-223	ENST00000515459		A0A1B0GW54	56 aa		7.16	□□□□□ -1.26
LMNA-223	ENST00000515459		A0A1W2PPM0	123 aa		7.16	□□□□□ -1.26
LMNA-223	ENST00000515459	MT1B	P07438	61 aa		7.16	□□□□□ -1.26
LMNA-223	ENST00000515459	TMEM254	Q8TBM7	123 aa		7.16	□□□□□ -1.26
LMNA-223	ENST00000515459		Q5VV11	94 aa		7.14	□□□□□ -1.27
LMNA-223	ENST00000515459	IGKV2D-30	A0A075B6S6	120 aa		7.13	□□□□□ -1.27
LMNA-223	ENST00000515459	MMP24-AS1	A0A0U1RRL7	71 aa		7.13	□□□□□ -1.27
LMNA-223	ENST00000515459	FAM236A	A0A1B0GUQ0	79 aa		7.13	□□□□□ -1.27
LMNA-223	ENST00000515459	FAM236B	A0A1B0GV22	79 aa		7.13	□□□□□ -1.27
LMNA-223	ENST00000515459	IGKV2-30	P06310	120 aa		7.13	□□□□□ -1.27
LMNA-223	ENST00000515459	KRTAP5-9	P26371	169 aa		7.13	□□□□□ -1.27
LMNA-223	ENST00000515459	NDUFS5	O43920	106 aa		7.12	□□□□□ -1.27
LMNA-223	ENST00000515459	LOC110117498	A0A087WWA1	95 aa		7.1	□□□□□ -1.27
LMNA-223	ENST00000515459	JMJD7-PLA2G4B	H0Y9G9	81 aa		7.1	□□□□□ -1.27
LMNA-223	ENST00000515459	C7orf65	Q6ZTY9	151 aa		7.1	□□□□□ -1.27
LMNA-223	ENST00000515459	SPCS1	Q9Y6A9	102 aa		7.1	□□□□□ -1.27
LMNA-223	ENST00000515459	hDV103S1	A0JD37	113 aa		7.09	□□□□□ -1.27
LMNA-223	ENST00000515459	KRTAP10-5	P60370	271 aa		7.09	□□□□□ -1.27
LMNA-223	ENST00000515459	KRTAP19-8	Q3LI54	63 aa		7.08	□□□□□ -1.28
LMNA-223	ENST00000515459		H3BT86	120 aa		7.07	□□□□□ -1.28
LMNA-223	ENST00000515459	PDE6G	P18545	87 aa		7.07	□□□□□ -1.28
LMNA-223	ENST00000515459	NREP	Q16612	68 aa		7.07	□□□□□ -1.28
LMNA-223	ENST00000515459	C5orf47	Q569G3	176 aa		7.07	□□□□□ -1.28
LMNA-223	ENST00000515459	SPRR2G	Q9BYE4	73 aa		7.07	□□□□□ -1.28
LMNA-223	ENST00000515459	C4orf26	Q17RF5	130 aa		7.05	□□□□□ -1.28
LMNA-223	ENST00000515459	GTF2H5	Q6ZYL4	71 aa		7.05	□□□□□ -1.28
LMNA-223	ENST00000515459		Q5W150	140 aa		7.04	□□□□□ -1.28
LMNA-223	ENST00000515459		K7EQZ3	153 aa		7.03	□□□□□ -1.28
LMNA-223	ENST00000515459	C14orf132	Q9NPU4	83 aa		7.03	□□□□□ -1.28
LMNA-223	ENST00000515459		K7EP34	96 aa		7.02	□□□□□ -1.29
LMNA-223	ENST00000515459	KMT2D	O14686	5537 aa		6.98	□□□□□ -1.29
LMNA-223	ENST00000515459	KRTAP2-3	P0C7H8	128 aa		6.98	□□□□□ -1.29
LMNA-223	ENST00000515459	CSAG1	Q6PB30	78 aa		6.98	□□□□□ -1.29
LMNA-223	ENST00000515459	KRTAP2-4	Q9BYR9	128 aa		6.98	□□□□□ -1.29
LMNA-223	ENST00000515459		S4R3F8	94 aa		6.96	□□□□□ -1.3
LMNA-223	ENST00000515459	MDN1	Q9NU22	5596 aa		6.96	□□□□□ -1.3
LMNA-223	ENST00000515459		F8W1H4	67 aa		6.95	□□□□□ -1.3
LMNA-223	ENST00000515459	KLKP1	Q107X0	134 aa		6.92	□□□□□ -1.3
LMNA-223	ENST00000515459	KRTAP3-1	Q9BYR8	98 aa		6.92	□□□□□ -1.3
LMNA-223	ENST00000515459	IMUP	Q9GZP8	106 aa		6.92	□□□□□ -1.3
LMNA-223	ENST00000515459	PRO0461	Q9UI25	63 aa		6.92	□□□□□ -1.3
LMNA-223	ENST00000515459	HCG22	E2RYF7	251 aa		6.91	□□□□□ -1.3
LMNA-223	ENST00000515459	SMCP	P49901	116 aa	Predicted RBP	6.91	□□□□□ -1.3
LMNA-223	ENST00000515459	LCA10	Q71F78	164 aa		6.91	□□□□□ -1.3
LMNA-223	ENST00000515459	CASC2	Q6XLA1	102 aa		6.9	□□□□□ -1.3
LMNA-223	ENST00000515459	BPY2	O14599	106 aa		6.89	□□□□□ -1.31
LMNA-223	ENST00000515459	CXCL6	P80162	114 aa		6.88	□□□□□ -1.31
LMNA-223	ENST00000515459	C1orf64	Q8NEQ6	169 aa		6.87	□□□□□ -1.31
LMNA-223	ENST00000515459		Q8N9L7	120 aa		6.84	□□□□□ -1.31

Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms