RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 VPREB1P12018 145 aa4.99□□□□□ -1.61
SCN1A-207ENST00000507401 KIAA0087Q14695 138 aa4.99□□□□□ -1.61
SCN1A-207ENST00000507401 LIMD2Q9BT23 127 aa4.99□□□□□ -1.61
SCN1A-207ENST00000507401 SPINK6Q6UWN8 80 aa4.98□□□□□ -1.61
SCN1A-207ENST00000507401 Q6ZRP5 223 aa4.98□□□□□ -1.61
SCN1A-207ENST00000507401 MPLKIPQ8TAP9 179 aa4.98□□□□□ -1.61
SCN1A-207ENST00000507401 ZNF73O43830 326 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-207ENST00000507401 MT1HL1P0DM35 61 aa4.97□□□□□ -1.61
SCN1A-207ENST00000507401 UBE2AP49459 152 aa4.97□□□□□ -1.61
SCN1A-207ENST00000507401 PRR3P79522 188 aaKnown RBP4.97□□□□□ -1.61
SCN1A-207ENST00000507401 SPAG11BQ08648 103 aa4.97□□□□□ -1.61
SCN1A-207ENST00000507401 MRPL55Q7Z7F7 128 aaKnown RBP4.97□□□□□ -1.61
SCN1A-207ENST00000507401 SPANXA2-OT1Q8N9U9 137 aa4.97□□□□□ -1.61
SCN1A-207ENST00000507401 HMCN2Q8NDA2 5059 aa4.97□□□□□ -1.61
SCN1A-207ENST00000507401 ETDCA0A1B0GVM5 59 aa4.96□□□□□ -1.62
SCN1A-207ENST00000507401 TLX1NBP0CAT3 122 aa4.96□□□□□ -1.62
SCN1A-207ENST00000507401 ZCCHC13Q8WW36 166 aaKnown RBP4.96□□□□□ -1.62
SCN1A-207ENST00000507401 A0A1W2PNN7 141 aa4.95□□□□□ -1.62
SCN1A-207ENST00000507401 M0R378 163 aa4.95□□□□□ -1.62
SCN1A-207ENST00000507401 C9orf116Q5BN46 136 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-207ENST00000507401 REG3GQ6UW15 175 aa4.94□□□□□ -1.62
SCN1A-207ENST00000507401 UNQ6190/PRO20217Q6UXQ8 127 aa4.94□□□□□ -1.62
SCN1A-207ENST00000507401 ATP11AUNQ6ZP68 121 aa4.94□□□□□ -1.62
SCN1A-207ENST00000507401 KTN1-AS1Q86SY8 53 aa4.94□□□□□ -1.62
SCN1A-207ENST00000507401 IGLV5-48A0A075B6I7 105 aa4.93□□□□□ -1.62
SCN1A-207ENST00000507401 MP68P56378 58 aa4.93□□□□□ -1.62
SCN1A-207ENST00000507401 FAM229BQ4G0N7 80 aa4.93□□□□□ -1.62
SCN1A-207ENST00000507401 C10orf25Q5T742 122 aa4.93□□□□□ -1.62
SCN1A-207ENST00000507401 C1orf64Q8NEQ6 169 aa4.93□□□□□ -1.62
SCN1A-207ENST00000507401 Q9BRP9 147 aa4.93□□□□□ -1.62
SCN1A-207ENST00000507401 TRAV22A0A0B4J277 110 aa4.92□□□□□ -1.62
SCN1A-207ENST00000507401 KRTAP10-8P60410 259 aa4.92□□□□□ -1.62
SCN1A-207ENST00000507401 DHRS4-AS1Q9P1J3 65 aa4.92□□□□□ -1.62
SCN1A-207ENST00000507401 C6orf48Q9UBA6 75 aa4.92□□□□□ -1.62
SCN1A-207ENST00000507401 PSORS1C2Q9UIG4 136 aa4.92□□□□□ -1.62
SCN1A-207ENST00000507401 TNXBP22105 4242 aa4.91□□□□□ -1.62
SCN1A-207ENST00000507401 HCG22E2RYF7 251 aa4.91□□□□□ -1.62
SCN1A-207ENST00000507401 HIGD2AQ9BW72 106 aa4.91□□□□□ -1.62
SCN1A-207ENST00000507401 UBR4Q5T4S7 5183 aa4.9□□□□□ -1.62
SCN1A-207ENST00000507401 PHF5AQ7RTV0 110 aaKnown RBP4.9□□□□□ -1.63
SCN1A-207ENST00000507401 C1orf137Q5JT78 98 aa4.89□□□□□ -1.63
SCN1A-207ENST00000507401 SPRR4Q96PI1 79 aa4.89□□□□□ -1.63
SCN1A-207ENST00000507401 KCNQ1DNQ9H478 68 aa4.89□□□□□ -1.63
SCN1A-207ENST00000507401 FAM168BA1KXE4 195 aa4.88□□□□□ -1.63
SCN1A-207ENST00000507401 IGLV7-43P04211 117 aa4.88□□□□□ -1.63
SCN1A-207ENST00000507401 Q75L30 129 aa4.87□□□□□ -1.63
SCN1A-207ENST00000507401 KRTAP7-1Q8IUC3 87 aa4.87□□□□□ -1.63
SCN1A-207ENST00000507401 Q8NBF4 154 aa4.87□□□□□ -1.63
SCN1A-207ENST00000507401 A0A087X002 238 aa4.86□□□□□ -1.63
SCN1A-207ENST00000507401 LOC101927531A0A1B0GV80 90 aa4.86□□□□□ -1.63
SCN1A-207ENST00000507401 SMIM29Q86T20 159 aa4.86□□□□□ -1.63
SCN1A-207ENST00000507401 RPL37AP8A6NKH3 93 aa4.85□□□□□ -1.63
SCN1A-207ENST00000507401 KRTAP11-1Q8IUC1 163 aa4.85□□□□□ -1.63
SCN1A-207ENST00000507401 LINC00208Q96KT6 92 aa4.85□□□□□ -1.63
SCN1A-207ENST00000507401 H0Y9J4 135 aa4.84□□□□□ -1.63
SCN1A-207ENST00000507401 ASB16-AS1Q495Z4 193 aa4.84□□□□□ -1.63
SCN1A-207ENST00000507401 Q5VV11 94 aa4.84□□□□□ -1.63
SCN1A-207ENST00000507401 Q8NDZ9 215 aa4.84□□□□□ -1.63
SCN1A-207ENST00000507401 XAGE1AQ9HD64 81 aa4.83□□□□□ -1.64
SCN1A-207ENST00000507401 CDC42SE1Q9NRR8 79 aa4.83□□□□□ -1.64
SCN1A-207ENST00000507401 IGLV1-50A0A075B6I6 118 aa4.82□□□□□ -1.64
SCN1A-207ENST00000507401 CHKB-CPT1BH3BT56 60 aa4.82□□□□□ -1.64
SCN1A-207ENST00000507401 PSPHP1O15172 72 aa4.82□□□□□ -1.64
SCN1A-207ENST00000507401 ZNF861PO60384 105 aa4.82□□□□□ -1.64
SCN1A-207ENST00000507401 C7orf65Q6ZTY9 151 aa4.82□□□□□ -1.64
SCN1A-207ENST00000507401 Q8N9P0 234 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-207ENST00000507401 Q8N9L7 120 aa4.81□□□□□ -1.64
SCN1A-207ENST00000507401 NKAPP1Q8N9T2 125 aa4.81□□□□□ -1.64
SCN1A-207ENST00000507401 IGLV5-37A0A075B6J1 123 aa4.8□□□□□ -1.64
SCN1A-207ENST00000507401 A8MUN3 132 aa4.8□□□□□ -1.64
SCN1A-207ENST00000507401 KRTAP1-4P0C5Y4 121 aa4.8□□□□□ -1.64
SCN1A-207ENST00000507401 Q8N377 158 aa4.8□□□□□ -1.64
SCN1A-207ENST00000507401 PRR26Q8N8Z3 221 aa4.8□□□□□ -1.64
SCN1A-207ENST00000507401 RBM12B-AS1Q9P1G2 102 aa4.8□□□□□ -1.64
SCN1A-207ENST00000507401 LRP2P98164 4655 aa4.8□□□□□ -1.64
SCN1A-207ENST00000507401 DSCR10P59022 87 aa4.79□□□□□ -1.64
SCN1A-207ENST00000507401 Q6ZRX8 168 aa4.79□□□□□ -1.64
SCN1A-207ENST00000507401 A0A1W2PNM2 257 aa4.78□□□□□ -1.64
SCN1A-207ENST00000507401 LCA10Q71F78 164 aa4.78□□□□□ -1.64
SCN1A-207ENST00000507401 IGLV8-61A0A075B6I0 122 aa4.77□□□□□ -1.65
SCN1A-207ENST00000507401 IGLV7-46A0A075B6I9 117 aa4.77□□□□□ -1.65
SCN1A-207ENST00000507401 A6NED7 52 aa4.77□□□□□ -1.65
SCN1A-207ENST00000507401 A6NN06 94 aa4.77□□□□□ -1.65
SCN1A-207ENST00000507401 SPRR1AP35321 89 aa4.77□□□□□ -1.65
SCN1A-207ENST00000507401 PRR15LQ9BU68 103 aa4.77□□□□□ -1.65
SCN1A-207ENST00000507401 TP53AIP1Q9HCN2 124 aa4.77□□□□□ -1.65
SCN1A-207ENST00000507401 LINC01558Q9Y6Z2 57 aa4.76□□□□□ -1.65
SCN1A-207ENST00000507401 H0Y9P7 68 aa4.75□□□□□ -1.65
SCN1A-207ENST00000507401 K7EQZ3 153 aa4.75□□□□□ -1.65
SCN1A-207ENST00000507401 RNF213Q63HN8 5207 aa4.75□□□□□ -1.65
SCN1A-207ENST00000507401 KRTAP13-1Q8IUC0 172 aa4.74□□□□□ -1.65
SCN1A-207ENST00000507401 KRTAP4-16G5E9R7 235 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-207ENST00000507401 CASC2Q6XLA1 102 aa4.72□□□□□ -1.65
SCN1A-207ENST00000507401 ST20-AS1Q8NBB2 130 aa4.72□□□□□ -1.65
SCN1A-207ENST00000507401 SPTSSBQ8NFR3 76 aa4.72□□□□□ -1.65
SCN1A-207ENST00000507401 COA5Q86WW8 74 aa4.71□□□□□ -1.66
SCN1A-207ENST00000507401 A8MWP4 228 aa4.7□□□□□ -1.66
SCN1A-207ENST00000507401 DEFB105AQ8NG35 78 aa4.7□□□□□ -1.66
SCN1A-207ENST00000507401 TYMSOSQ8TAI1 123 aa4.7□□□□□ -1.66
SCN1A-207ENST00000507401 LPAP08519 4548 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms