RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 KRTAP9-2Q9BYQ4 174 aa7.82□□□□□ -1.16
USP4-212ENST00000486549 C20orf166-AS1Q96NR2 134 aa7.8□□□□□ -1.16
USP4-212ENST00000486549 A8MUU9 505 aa7.79□□□□□ -1.16
USP4-212ENST00000486549 NOTCH2NLQ7Z3S9 236 aa7.79□□□□□ -1.16
USP4-212ENST00000486549 A0A1B0GW54 56 aa7.78□□□□□ -1.16
USP4-212ENST00000486549 A0A1B0GVX0 72 aa7.77□□□□□ -1.17
USP4-212ENST00000486549 J3KT08 172 aa7.77□□□□□ -1.17
USP4-212ENST00000486549 KRTAP16-1A8MUX0 517 aa7.76□□□□□ -1.17
USP4-212ENST00000486549 K7EP34 96 aa7.76□□□□□ -1.17
USP4-212ENST00000486549 SMCPP49901 116 aaPredicted RBP7.75□□□□□ -1.17
USP4-212ENST00000486549 C8orf87E5RJ46 101 aa7.74□□□□□ -1.17
USP4-212ENST00000486549 NDUFB1O75438 58 aa7.73□□□□□ -1.17
USP4-212ENST00000486549 NREPQ16612 68 aa7.73□□□□□ -1.17
USP4-212ENST00000486549 KRTAP19-2Q3LHN2 52 aa7.71□□□□□ -1.18
USP4-212ENST00000486549 LCE2CQ5TA81 110 aa7.71□□□□□ -1.18
USP4-212ENST00000486549 PRO0461Q9UI25 63 aa7.71□□□□□ -1.18
USP4-212ENST00000486549 A8MWP4 228 aa7.7□□□□□ -1.18
USP4-212ENST00000486549 IGKV3D-7A0A0C4DH55 119 aa7.68□□□□□ -1.18
USP4-212ENST00000486549 GTF2H5Q6ZYL4 71 aa7.68□□□□□ -1.18
USP4-212ENST00000486549 COX6B2Q6YFQ2 88 aa7.67□□□□□ -1.18
USP4-212ENST00000486549 C8orf17Q9NRJ1 99 aa7.66□□□□□ -1.18
USP4-212ENST00000486549 PRR15Q8IV56 129 aa7.63□□□□□ -1.19
USP4-212ENST00000486549 MT1HP80294 61 aa7.62□□□□□ -1.19
USP4-212ENST00000486549 BPY2O14599 106 aa7.61□□□□□ -1.19
USP4-212ENST00000486549 LCE2DQ5TA82 110 aaPredicted RBP7.61□□□□□ -1.19
USP4-212ENST00000486549 Q6ZVQ6 151 aa7.61□□□□□ -1.19
USP4-212ENST00000486549 K7EQZ3 153 aa7.6□□□□□ -1.19
USP4-212ENST00000486549 KRTAP9-6A0A140TA67 174 aa7.59□□□□□ -1.19
USP4-212ENST00000486549 F8W1H4 67 aa7.59□□□□□ -1.19
USP4-212ENST00000486549 MMP24-AS1A0A0U1RRL7 71 aa7.58□□□□□ -1.2
USP4-212ENST00000486549 Q8N9P0 234 aaPredicted RBP7.58□□□□□ -1.2
USP4-212ENST00000486549 ZCCHC13Q8WW36 166 aaKnown RBP7.58□□□□□ -1.2
USP4-212ENST00000486549 ETDBQ3ZM63 59 aa7.57□□□□□ -1.2
USP4-212ENST00000486549 M0R2T5 61 aa7.56□□□□□ -1.2
USP4-212ENST00000486549 LINC00846Q9NV44 126 aa7.56□□□□□ -1.2
USP4-212ENST00000486549 Q8N9L7 120 aa7.55□□□□□ -1.2
USP4-212ENST00000486549 TMEM254Q8TBM7 123 aa7.55□□□□□ -1.2
USP4-212ENST00000486549 UBL5Q9BZL1 73 aa7.55□□□□□ -1.2
USP4-212ENST00000486549 MRPL34Q9BQ48 92 aaKnown RBP7.54□□□□□ -1.2
USP4-212ENST00000486549 hDV103S1A0JD37 113 aa7.53□□□□□ -1.2
USP4-212ENST00000486549 FLGP20930 4061 aaPredicted RBP7.51□□□□□ -1.21
USP4-212ENST00000486549 NDUFS5O43920 106 aa7.51□□□□□ -1.21
USP4-212ENST00000486549 WFDC13Q8IUB5 93 aa7.5□□□□□ -1.21
USP4-212ENST00000486549 FAM236DA0A1B0GTK5 79 aa7.49□□□□□ -1.21
USP4-212ENST00000486549 FAM236CP0DP71 79 aa7.49□□□□□ -1.21
USP4-212ENST00000486549 HRES1P13985 223 aa7.49□□□□□ -1.21
USP4-212ENST00000486549 LORP23490 312 aaPredicted RBP7.47□□□□□ -1.21
USP4-212ENST00000486549 SPINK7P58062 85 aa7.47□□□□□ -1.21
USP4-212ENST00000486549 KRTAP10-6P60371 365 aaPredicted RBP7.47□□□□□ -1.21
USP4-212ENST00000486549 CASC2Q6XLA1 102 aa7.47□□□□□ -1.21
USP4-212ENST00000486549 RBM12B-AS1Q9P1G2 102 aa7.47□□□□□ -1.21
USP4-212ENST00000486549 MPLKIPQ8TAP9 179 aa7.44□□□□□ -1.22
USP4-212ENST00000486549 A0A1B0GV90 55 aa7.41□□□□□ -1.22
USP4-212ENST00000486549 HCG22E2RYF7 251 aa7.41□□□□□ -1.22
USP4-212ENST00000486549 CRCT1Q9UGL9 99 aa7.41□□□□□ -1.22
USP4-212ENST00000486549 CXCL6P80162 114 aa7.38□□□□□ -1.23
USP4-212ENST00000486549 Q5W150 140 aa7.37□□□□□ -1.23
USP4-212ENST00000486549 IGKV2D-30A0A075B6S6 120 aa7.35□□□□□ -1.23
USP4-212ENST00000486549 IGKV2-30P06310 120 aa7.35□□□□□ -1.23
USP4-212ENST00000486549 ACYP1P07311 99 aa7.35□□□□□ -1.23
USP4-212ENST00000486549 FAM240AA0A1B0GVK7 77 aa7.33□□□□□ -1.24
USP4-212ENST00000486549 C7orf65Q6ZTY9 151 aa7.31□□□□□ -1.24
USP4-212ENST00000486549 FSIP2Q5CZC0 6907 aa7.31□□□□□ -1.24
USP4-212ENST00000486549 ATP5EP2Q5VTU8 51 aa7.26□□□□□ -1.25
USP4-212ENST00000486549 HIST1H4AP62805 103 aaKnown RBP7.24□□□□□ -1.25
USP4-212ENST00000486549 TP53AIP1Q9HCN2 124 aa7.23□□□□□ -1.25
USP4-212ENST00000486549 KRTAP9-8Q9BYQ0 159 aa7.21□□□□□ -1.26
USP4-212ENST00000486549 C4orf26Q17RF5 130 aa7.19□□□□□ -1.26
USP4-212ENST00000486549 LINC00643Q86TS7 51 aa7.19□□□□□ -1.26
USP4-212ENST00000486549 H1FX-AS1Q4G0G2 97 aa7.18□□□□□ -1.26
USP4-212ENST00000486549 A0A087WVE0 104 aa7.16□□□□□ -1.26
USP4-212ENST00000486549 MT2AP02795 61 aa7.16□□□□□ -1.26
USP4-212ENST00000486549 J3QR89 54 aa7.15□□□□□ -1.26
USP4-212ENST00000486549 TRAV22A0A0B4J277 110 aa7.12□□□□□ -1.27
USP4-212ENST00000486549 MT1FP04733 61 aa7.1□□□□□ -1.27
USP4-212ENST00000486549 KRTAP10-10P60014 251 aa7.09□□□□□ -1.27
USP4-212ENST00000486549 UQCRQO14949 82 aa7.07□□□□□ -1.28
USP4-212ENST00000486549 C1orf64Q8NEQ6 169 aa7.07□□□□□ -1.28
USP4-212ENST00000486549 CYP4F30PQ9H0H9 118 aa7.07□□□□□ -1.28
USP4-212ENST00000486549 H0Y9P7 68 aa7.06□□□□□ -1.28
USP4-212ENST00000486549 LOC101927531A0A1B0GV80 90 aa7.05□□□□□ -1.28
USP4-212ENST00000486549 KRTAP3-1Q9BYR8 98 aa7.05□□□□□ -1.28
USP4-212ENST00000486549 ATOX1O00244 68 aa7.01□□□□□ -1.29
USP4-212ENST00000486549 S4R3F8 94 aa7.01□□□□□ -1.29
USP4-212ENST00000486549 C5orf47Q569G3 176 aa6.98□□□□□ -1.29
USP4-212ENST00000486549 KRTAP9-3Q9BYQ3 159 aa6.98□□□□□ -1.29
USP4-212ENST00000486549 OCR1Q9BZK8 76 aa6.97□□□□□ -1.29
USP4-212ENST00000486549 LINC00208Q96KT6 92 aa6.96□□□□□ -1.3
USP4-212ENST00000486549 USH2AO75445 5202 aa6.95□□□□□ -1.3
USP4-212ENST00000486549 K7ERU9 68 aa6.95□□□□□ -1.3
USP4-212ENST00000486549 LCA10Q71F78 164 aa6.95□□□□□ -1.3
USP4-212ENST00000486549 MP68P56378 58 aa6.94□□□□□ -1.3
USP4-212ENST00000486549 LCE2BO14633 110 aa6.93□□□□□ -1.3
USP4-212ENST00000486549 SCGB1A1P11684 91 aa6.93□□□□□ -1.3
USP4-212ENST00000486549 MT-ATP8P03928 68 aa6.91□□□□□ -1.3
USP4-212ENST00000486549 CSAG1Q6PB30 78 aa6.9□□□□□ -1.3
USP4-212ENST00000486549 KLKP1Q107X0 134 aa6.89□□□□□ -1.31
USP4-212ENST00000486549 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.88□□□□□ -1.31
USP4-212ENST00000486549 SSPOA2VEC9 5147 aa6.86□□□□□ -1.31
USP4-212ENST00000486549 FAM236AA0A1B0GUQ0 79 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms