RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 LINC00472Q9H8W2 130 aa4.56□□□□□ -1.68
SF3A1-208ENST00000485618 PRO0461Q9UI25 63 aa4.56□□□□□ -1.68
SF3A1-208ENST00000485618 SMCPP49901 116 aaPredicted RBP4.55□□□□□ -1.68
SF3A1-208ENST00000485618 LINC00313P59037 77 aa4.55□□□□□ -1.68
SF3A1-208ENST00000485618 XP32Q5T750 250 aa4.55□□□□□ -1.68
SF3A1-208ENST00000485618 LCE2AQ5TA79 106 aaPredicted RBP4.54□□□□□ -1.68
SF3A1-208ENST00000485618 C8orf87E5RJ46 101 aa4.53□□□□□ -1.68
SF3A1-208ENST00000485618 ETDBQ3ZM63 59 aa4.53□□□□□ -1.68
SF3A1-208ENST00000485618 Q96NJ1 140 aa4.53□□□□□ -1.68
SF3A1-208ENST00000485618 UBL5Q9BZL1 73 aa4.53□□□□□ -1.68
SF3A1-208ENST00000485618 BPY2O14599 106 aa4.52□□□□□ -1.69
SF3A1-208ENST00000485618 DEFB116Q30KQ4 102 aa4.52□□□□□ -1.69
SF3A1-208ENST00000485618 ATP11AUNQ6ZP68 121 aa4.52□□□□□ -1.69
SF3A1-208ENST00000485618 IGHV6-1A0A0B4J1U7 121 aa4.51□□□□□ -1.69
SF3A1-208ENST00000485618 A0A1B0GVX0 72 aa4.51□□□□□ -1.69
SF3A1-208ENST00000485618 A8MWP4 228 aa4.51□□□□□ -1.69
SF3A1-208ENST00000485618 ACYP1P07311 99 aa4.51□□□□□ -1.69
SF3A1-208ENST00000485618 Q75L30 129 aa4.5□□□□□ -1.69
SF3A1-208ENST00000485618 RPL37P61927 97 aaKnown RBP4.49□□□□□ -1.69
SF3A1-208ENST00000485618 DSCR10P59022 87 aa4.48□□□□□ -1.69
SF3A1-208ENST00000485618 Q6ZVQ6 151 aa4.48□□□□□ -1.69
SF3A1-208ENST00000485618 A0A1B0GV90 55 aa4.47□□□□□ -1.69
SF3A1-208ENST00000485618 J3QR89 54 aa4.46□□□□□ -1.7
SF3A1-208ENST00000485618 PCOTHQ58A44 107 aa4.46□□□□□ -1.7
SF3A1-208ENST00000485618 PRR15Q8IV56 129 aa4.46□□□□□ -1.7
SF3A1-208ENST00000485618 C20orf166-AS1Q96NR2 134 aa4.46□□□□□ -1.7
SF3A1-208ENST00000485618 IGKV3D-7A0A0C4DH55 119 aa4.45□□□□□ -1.7
SF3A1-208ENST00000485618 FAM240AA0A1B0GVK7 77 aa4.45□□□□□ -1.7
SF3A1-208ENST00000485618 LINC00846Q9NV44 126 aa4.45□□□□□ -1.7
SF3A1-208ENST00000485618 A8MUU9 505 aa4.44□□□□□ -1.7
SF3A1-208ENST00000485618 C8orf17Q9NRJ1 99 aa4.44□□□□□ -1.7
SF3A1-208ENST00000485618 CXCL6P80162 114 aa4.43□□□□□ -1.7
SF3A1-208ENST00000485618 KRTAP9-7A8MTY7 169 aa4.42□□□□□ -1.7
SF3A1-208ENST00000485618 MUC17Q685J3 4493 aa4.42□□□□□ -1.7
SF3A1-208ENST00000485618 hDV103S1A0JD37 113 aa4.41□□□□□ -1.7
SF3A1-208ENST00000485618 NOTCH2NLQ7Z3S9 236 aa4.41□□□□□ -1.7
SF3A1-208ENST00000485618 KRTAP16-1A8MUX0 517 aa4.4□□□□□ -1.71
SF3A1-208ENST00000485618 K7EQZ3 153 aa4.4□□□□□ -1.71
SF3A1-208ENST00000485618 ATP5EP2Q5VTU8 51 aa4.4□□□□□ -1.71
SF3A1-208ENST00000485618 TMEM254Q8TBM7 123 aa4.4□□□□□ -1.71
SF3A1-208ENST00000485618 Q8N9P0 234 aaPredicted RBP4.39□□□□□ -1.71
SF3A1-208ENST00000485618 MRPL34Q9BQ48 92 aaKnown RBP4.39□□□□□ -1.71
SF3A1-208ENST00000485618 NDUFS5O43920 106 aa4.38□□□□□ -1.71
SF3A1-208ENST00000485618 CASC2Q6XLA1 102 aa4.38□□□□□ -1.71
SF3A1-208ENST00000485618 MMP24-AS1A0A0U1RRL7 71 aa4.37□□□□□ -1.71
SF3A1-208ENST00000485618 LINC00643Q86TS7 51 aa4.37□□□□□ -1.71
SF3A1-208ENST00000485618 ZCCHC13Q8WW36 166 aaKnown RBP4.37□□□□□ -1.71
SF3A1-208ENST00000485618 HCG22E2RYF7 251 aa4.36□□□□□ -1.71
SF3A1-208ENST00000485618 WFDC13Q8IUB5 93 aa4.35□□□□□ -1.71
SF3A1-208ENST00000485618 Q8N9L7 120 aa4.35□□□□□ -1.71
SF3A1-208ENST00000485618 K7ERU9 68 aa4.34□□□□□ -1.71
SF3A1-208ENST00000485618 HIST1H4AP62805 103 aaKnown RBP4.33□□□□□ -1.72
SF3A1-208ENST00000485618 COX6B2Q6YFQ2 88 aa4.33□□□□□ -1.72
SF3A1-208ENST00000485618 TP53AIP1Q9HCN2 124 aa4.33□□□□□ -1.72
SF3A1-208ENST00000485618 KRTAP4-1Q9BYQ7 146 aa4.32□□□□□ -1.72
SF3A1-208ENST00000485618 RBM12B-AS1Q9P1G2 102 aa4.32□□□□□ -1.72
SF3A1-208ENST00000485618 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.31□□□□□ -1.72
SF3A1-208ENST00000485618 SPINK7P58062 85 aa4.29□□□□□ -1.72
SF3A1-208ENST00000485618 FAM236DA0A1B0GTK5 79 aa4.27□□□□□ -1.73
SF3A1-208ENST00000485618 FAM236CP0DP71 79 aa4.27□□□□□ -1.73
SF3A1-208ENST00000485618 C7orf65Q6ZTY9 151 aa4.26□□□□□ -1.73
SF3A1-208ENST00000485618 UQCRQO14949 82 aa4.24□□□□□ -1.73
SF3A1-208ENST00000485618 SCGB1A1P11684 91 aa4.24□□□□□ -1.73
SF3A1-208ENST00000485618 LCE2CQ5TA81 110 aa4.24□□□□□ -1.73
SF3A1-208ENST00000485618 IMUPQ9GZP8 106 aa4.24□□□□□ -1.73
SF3A1-208ENST00000485618 IGKV2D-30A0A075B6S6 120 aa4.23□□□□□ -1.73
SF3A1-208ENST00000485618 ATOX1O00244 68 aa4.23□□□□□ -1.73
SF3A1-208ENST00000485618 IGKV2-30P06310 120 aa4.23□□□□□ -1.73
SF3A1-208ENST00000485618 MT1HP80294 61 aa4.23□□□□□ -1.73
SF3A1-208ENST00000485618 M0R2T5 61 aa4.22□□□□□ -1.73
SF3A1-208ENST00000485618 Q5W150 140 aa4.22□□□□□ -1.73
SF3A1-208ENST00000485618 KRTAP19-2Q3LHN2 52 aa4.21□□□□□ -1.74
SF3A1-208ENST00000485618 A0A087WVE0 104 aa4.2□□□□□ -1.74
SF3A1-208ENST00000485618 TRAV22A0A0B4J277 110 aa4.2□□□□□ -1.74
SF3A1-208ENST00000485618 HRES1P13985 223 aa4.2□□□□□ -1.74
SF3A1-208ENST00000485618 LOC101927531A0A1B0GV80 90 aa4.19□□□□□ -1.74
SF3A1-208ENST00000485618 MP68P56378 58 aa4.19□□□□□ -1.74
SF3A1-208ENST00000485618 SMIM20Q8N5G0 67 aa4.18□□□□□ -1.74
SF3A1-208ENST00000485618 MPLKIPQ8TAP9 179 aa4.18□□□□□ -1.74
SF3A1-208ENST00000485618 LORP23490 312 aaPredicted RBP4.17□□□□□ -1.74
SF3A1-208ENST00000485618 KRTAP10-6P60371 365 aaPredicted RBP4.17□□□□□ -1.74
SF3A1-208ENST00000485618 C5orf47Q569G3 176 aa4.17□□□□□ -1.74
SF3A1-208ENST00000485618 H0Y9P7 68 aa4.16□□□□□ -1.74
SF3A1-208ENST00000485618 SYNE2Q8WXH0 6885 aaKnown RBP4.15□□□□□ -1.74
SF3A1-208ENST00000485618 H3BPC8 53 aa4.15□□□□□ -1.75
SF3A1-208ENST00000485618 FLGP20930 4061 aaPredicted RBP4.14□□□□□ -1.75
SF3A1-208ENST00000485618 SSPOA2VEC9 5147 aa4.14□□□□□ -1.75
SF3A1-208ENST00000485618 USH2AO75445 5202 aa4.14□□□□□ -1.75
SF3A1-208ENST00000485618 MT-ATP8P03928 68 aa4.14□□□□□ -1.75
SF3A1-208ENST00000485618 H1FX-AS1Q4G0G2 97 aa4.14□□□□□ -1.75
SF3A1-208ENST00000485618 C1orf64Q8NEQ6 169 aa4.14□□□□□ -1.75
SF3A1-208ENST00000485618 CYP4F30PQ9H0H9 118 aa4.14□□□□□ -1.75
SF3A1-208ENST00000485618 OCR1Q9BZK8 76 aa4.13□□□□□ -1.75
SF3A1-208ENST00000485618 C4orf26Q17RF5 130 aa4.12□□□□□ -1.75
SF3A1-208ENST00000485618 LINC00208Q96KT6 92 aa4.11□□□□□ -1.75
SF3A1-208ENST00000485618 FAM236AA0A1B0GUQ0 79 aa4.1□□□□□ -1.75
SF3A1-208ENST00000485618 FAM236BA0A1B0GV22 79 aa4.1□□□□□ -1.75
SF3A1-208ENST00000485618 TRAV7A0A075B6U4 112 aa4.09□□□□□ -1.75
SF3A1-208ENST00000485618 MACF1Q9UPN3 7388 aaKnown RBP4.08□□□□□ -1.76
SF3A1-208ENST00000485618 FCGBPQ9Y6R7 5405 aaPredicted RBP4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 231.4 ms