RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 A0A1B0GVX0 72 aa10.59□□□□□ -0.71
LIME1-205ENST00000480139 ETDBQ3ZM63 59 aa10.58□□□□□ -0.72
LIME1-205ENST00000480139 IGHV6-1A0A0B4J1U7 121 aa10.57□□□□□ -0.72
LIME1-205ENST00000480139 C8orf87E5RJ46 101 aa10.57□□□□□ -0.72
LIME1-205ENST00000480139 PCOTHQ58A44 107 aa10.57□□□□□ -0.72
LIME1-205ENST00000480139 C20orf166-AS1Q96NR2 134 aa10.57□□□□□ -0.72
LIME1-205ENST00000480139 A8MWP4 228 aa10.56□□□□□ -0.72
LIME1-205ENST00000480139 NDUFB1O75438 58 aa10.56□□□□□ -0.72
LIME1-205ENST00000480139 A8MUU9 505 aa10.54□□□□□ -0.72
LIME1-205ENST00000480139 KRTAP16-1A8MUX0 517 aa10.54□□□□□ -0.72
LIME1-205ENST00000480139 NOTCH2NLQ7Z3S9 236 aa10.53□□□□□ -0.72
LIME1-205ENST00000480139 A0A1B0GV90 55 aa10.52□□□□□ -0.73
LIME1-205ENST00000480139 Q6ZVQ6 151 aa10.51□□□□□ -0.73
LIME1-205ENST00000480139 KRTAP4-1Q9BYQ7 146 aa10.51□□□□□ -0.73
LIME1-205ENST00000480139 IGKV3D-7A0A0C4DH55 119 aa10.5□□□□□ -0.73
LIME1-205ENST00000480139 ATP11AUNQ6ZP68 121 aa10.48□□□□□ -0.73
LIME1-205ENST00000480139 PRR15Q8IV56 129 aa10.48□□□□□ -0.73
LIME1-205ENST00000480139 LINC00846Q9NV44 126 aa10.48□□□□□ -0.73
LIME1-205ENST00000480139 A0A0U1RQV1 116 aa10.47□□□□□ -0.73
LIME1-205ENST00000480139 BPY2O14599 106 aa10.47□□□□□ -0.73
LIME1-205ENST00000480139 UBL5Q9BZL1 73 aa10.47□□□□□ -0.73
LIME1-205ENST00000480139 C8orf17Q9NRJ1 99 aa10.45□□□□□ -0.74
LIME1-205ENST00000480139 K7EQZ3 153 aa10.41□□□□□ -0.74
LIME1-205ENST00000480139 MMP24-AS1A0A0U1RRL7 71 aa10.37□□□□□ -0.75
LIME1-205ENST00000480139 FAM240AA0A1B0GVK7 77 aa10.37□□□□□ -0.75
LIME1-205ENST00000480139 ACYP1P07311 99 aa10.37□□□□□ -0.75
LIME1-205ENST00000480139 Q8N9P0 234 aaPredicted RBP10.37□□□□□ -0.75
LIME1-205ENST00000480139 TMEM254Q8TBM7 123 aa10.33□□□□□ -0.76
LIME1-205ENST00000480139 hDV103S1A0JD37 113 aa10.31□□□□□ -0.76
LIME1-205ENST00000480139 CXCL6P80162 114 aa10.31□□□□□ -0.76
LIME1-205ENST00000480139 Q8N9L7 120 aa10.31□□□□□ -0.76
LIME1-205ENST00000480139 FAT4Q6V0I7 4981 aa10.3□□□□□ -0.76
LIME1-205ENST00000480139 MRPL34Q9BQ48 92 aaKnown RBP10.3□□□□□ -0.76
LIME1-205ENST00000480139 ZCCHC13Q8WW36 166 aaKnown RBP10.27□□□□□ -0.77
LIME1-205ENST00000480139 KRTAP19-2Q3LHN2 52 aa10.24□□□□□ -0.77
LIME1-205ENST00000480139 CASC2Q6XLA1 102 aa10.23□□□□□ -0.77
LIME1-205ENST00000480139 WFDC13Q8IUB5 93 aa10.21□□□□□ -0.77
LIME1-205ENST00000480139 HCG22E2RYF7 251 aa10.2□□□□□ -0.78
LIME1-205ENST00000480139 ATP5EP2Q5VTU8 51 aa10.2□□□□□ -0.78
LIME1-205ENST00000480139 LCE2AQ5TA79 106 aaPredicted RBP10.19□□□□□ -0.78
LIME1-205ENST00000480139 LCE2CQ5TA81 110 aa10.19□□□□□ -0.78
LIME1-205ENST00000480139 J3QR89 54 aa10.16□□□□□ -0.78
LIME1-205ENST00000480139 NDUFS5O43920 106 aa10.16□□□□□ -0.78
LIME1-205ENST00000480139 LINC00643Q86TS7 51 aa10.13□□□□□ -0.79
LIME1-205ENST00000480139 COX6B2Q6YFQ2 88 aa10.09□□□□□ -0.79
LIME1-205ENST00000480139 SPINK7P58062 85 aa10.08□□□□□ -0.8
LIME1-205ENST00000480139 HRES1P13985 223 aa10.07□□□□□ -0.8
LIME1-205ENST00000480139 MPLKIPQ8TAP9 179 aa10.05□□□□□ -0.8
LIME1-205ENST00000480139 Q5W150 140 aa10.04□□□□□ -0.8
LIME1-205ENST00000480139 MT1HP80294 61 aa10.03□□□□□ -0.8
LIME1-205ENST00000480139 HIST1H4AP62805 103 aaKnown RBP10.02□□□□□ -0.81
LIME1-205ENST00000480139 TP53AIP1Q9HCN2 124 aa10.02□□□□□ -0.81
LIME1-205ENST00000480139 RBM12B-AS1Q9P1G2 102 aa10.01□□□□□ -0.81
LIME1-205ENST00000480139 K7ERU9 68 aa9.96□□□□□ -0.82
LIME1-205ENST00000480139 C7orf65Q6ZTY9 151 aa9.94□□□□□ -0.82
LIME1-205ENST00000480139 FAM236DA0A1B0GTK5 79 aa9.93□□□□□ -0.82
LIME1-205ENST00000480139 FAM236CP0DP71 79 aa9.93□□□□□ -0.82
LIME1-205ENST00000480139 A0A087WVE0 104 aa9.92□□□□□ -0.82
LIME1-205ENST00000480139 IGKV2D-30A0A075B6S6 120 aa9.91□□□□□ -0.82
LIME1-205ENST00000480139 IGKV2-30P06310 120 aa9.91□□□□□ -0.82
LIME1-205ENST00000480139 FLGP20930 4061 aaPredicted RBP9.91□□□□□ -0.82
LIME1-205ENST00000480139 M0R2T5 61 aa9.85□□□□□ -0.83
LIME1-205ENST00000480139 TRAV22A0A0B4J277 110 aa9.82□□□□□ -0.84
LIME1-205ENST00000480139 UQCRQO14949 82 aa9.82□□□□□ -0.84
LIME1-205ENST00000480139 IMUPQ9GZP8 106 aa9.79□□□□□ -0.84
LIME1-205ENST00000480139 KRTAP10-6P60371 365 aaPredicted RBP9.77□□□□□ -0.85
LIME1-205ENST00000480139 LORP23490 312 aaPredicted RBP9.76□□□□□ -0.85
LIME1-205ENST00000480139 LOC101927531A0A1B0GV80 90 aa9.74□□□□□ -0.85
LIME1-205ENST00000480139 ATOX1O00244 68 aa9.74□□□□□ -0.85
LIME1-205ENST00000480139 OCR1Q9BZK8 76 aa9.74□□□□□ -0.85
LIME1-205ENST00000480139 MT-ATP8P03928 68 aa9.73□□□□□ -0.85
LIME1-205ENST00000480139 H0Y9P7 68 aa9.71□□□□□ -0.86
LIME1-205ENST00000480139 CYP4F30PQ9H0H9 118 aa9.71□□□□□ -0.86
LIME1-205ENST00000480139 C4orf26Q17RF5 130 aa9.7□□□□□ -0.86
LIME1-205ENST00000480139 H1FX-AS1Q4G0G2 97 aa9.7□□□□□ -0.86
LIME1-205ENST00000480139 SCGB1A1P11684 91 aa9.65□□□□□ -0.86
LIME1-205ENST00000480139 MP68P56378 58 aa9.62□□□□□ -0.87
LIME1-205ENST00000480139 C5orf47Q569G3 176 aa9.62□□□□□ -0.87
LIME1-205ENST00000480139 C1orf64Q8NEQ6 169 aa9.61□□□□□ -0.87
LIME1-205ENST00000480139 LINC00208Q96KT6 92 aa9.59□□□□□ -0.87
LIME1-205ENST00000480139 KRTAP3-1Q9BYR8 98 aa9.59□□□□□ -0.87
LIME1-205ENST00000480139 FAM236AA0A1B0GUQ0 79 aa9.57□□□□□ -0.88
LIME1-205ENST00000480139 FAM236BA0A1B0GV22 79 aa9.57□□□□□ -0.88
LIME1-205ENST00000480139 H3BPC8 53 aa9.57□□□□□ -0.88
LIME1-205ENST00000480139 KRTAP9-8Q9BYQ0 159 aa9.56□□□□□ -0.88
LIME1-205ENST00000480139 SMIM20Q8N5G0 67 aa9.54□□□□□ -0.88
LIME1-205ENST00000480139 LCE2DQ5TA82 110 aaPredicted RBP9.53□□□□□ -0.88
LIME1-205ENST00000480139 KRTAP9-2Q9BYQ4 174 aa9.53□□□□□ -0.88
LIME1-205ENST00000480139 TRAV7A0A075B6U4 112 aa9.48□□□□□ -0.89
LIME1-205ENST00000480139 KLKP1Q107X0 134 aa9.47□□□□□ -0.89
LIME1-205ENST00000480139 MT2AP02795 61 aa9.46□□□□□ -0.9
LIME1-205ENST00000480139 S4R3F8 94 aa9.44□□□□□ -0.9
LIME1-205ENST00000480139 A8MUN3 132 aa9.4□□□□□ -0.9
LIME1-205ENST00000480139 LCA10Q71F78 164 aa9.39□□□□□ -0.91
LIME1-205ENST00000480139 MT1FP04733 61 aa9.38□□□□□ -0.91
LIME1-205ENST00000480139 KRTAP10-10P60014 251 aa9.33□□□□□ -0.92
LIME1-205ENST00000480139 CSAG1Q6PB30 78 aa9.33□□□□□ -0.92
LIME1-205ENST00000480139 SERP2Q8N6R1 65 aa9.32□□□□□ -0.92
LIME1-205ENST00000480139 KRTAP3-3Q9BYR6 98 aa9.3□□□□□ -0.92
LIME1-205ENST00000480139 DMAC1Q96GE9 116 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms