RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 JMJD7-PLA2G4BH0Y9G9 81 aa10.84□□□□□ -0.67
HMGB3-205ENST00000455596 J3KT08 172 aa10.82□□□□□ -0.68
HMGB3-205ENST00000455596 Q6ZQT0 140 aa10.82□□□□□ -0.68
HMGB3-205ENST00000455596 LYRM7Q5U5X0 104 aa10.79□□□□□ -0.68
HMGB3-205ENST00000455596 CRCT1Q9UGL9 99 aa10.79□□□□□ -0.68
HMGB3-205ENST00000455596 TSTD3H0UI37 97 aa10.78□□□□□ -0.68
HMGB3-205ENST00000455596 LOC110117498A0A087WWA1 95 aa10.77□□□□□ -0.69
HMGB3-205ENST00000455596 A0A1B0GW54 56 aa10.76□□□□□ -0.69
HMGB3-205ENST00000455596 PDE6GP18545 87 aa10.75□□□□□ -0.69
HMGB3-205ENST00000455596 NDUFB1O75438 58 aa10.74□□□□□ -0.69
HMGB3-205ENST00000455596 BATFQ16520 125 aa10.74□□□□□ -0.69
HMGB3-205ENST00000455596 FAM236DA0A1B0GTK5 79 aa10.72□□□□□ -0.69
HMGB3-205ENST00000455596 FAM236CP0DP71 79 aa10.72□□□□□ -0.69
HMGB3-205ENST00000455596 C14orf132Q9NPU4 83 aa10.72□□□□□ -0.69
HMGB3-205ENST00000455596 RBM12B-AS1Q9P1G2 102 aa10.71□□□□□ -0.69
HMGB3-205ENST00000455596 HRES1P13985 223 aa10.69□□□□□ -0.7
HMGB3-205ENST00000455596 A8MWP4 228 aa10.67□□□□□ -0.7
HMGB3-205ENST00000455596 MPLKIPQ8TAP9 179 aa10.67□□□□□ -0.7
HMGB3-205ENST00000455596 ZCCHC13Q8WW36 166 aaKnown RBP10.67□□□□□ -0.7
HMGB3-205ENST00000455596 FSIP2Q5CZC0 6907 aa10.67□□□□□ -0.7
HMGB3-205ENST00000455596 C8orf17Q9NRJ1 99 aa10.65□□□□□ -0.7
HMGB3-205ENST00000455596 Q8N9P0 234 aaPredicted RBP10.64□□□□□ -0.71
HMGB3-205ENST00000455596 C9orf118A6NHY6 69 aa10.63□□□□□ -0.71
HMGB3-205ENST00000455596 IGKV3D-7A0A0C4DH55 119 aa10.62□□□□□ -0.71
HMGB3-205ENST00000455596 LOC105371267A0A1B0GV96 52 aa10.62□□□□□ -0.71
HMGB3-205ENST00000455596 NREPQ16612 68 aa10.61□□□□□ -0.71
HMGB3-205ENST00000455596 H3BT86 120 aa10.59□□□□□ -0.71
HMGB3-205ENST00000455596 KRTAP9-8Q9BYQ0 159 aa10.59□□□□□ -0.71
HMGB3-205ENST00000455596 TAX1BP3O14907 124 aa10.58□□□□□ -0.72
HMGB3-205ENST00000455596 A0A1W2PPM0 123 aa10.57□□□□□ -0.72
HMGB3-205ENST00000455596 SPINK7P58062 85 aa10.57□□□□□ -0.72
HMGB3-205ENST00000455596 MTURNQ8N3F0 131 aa10.57□□□□□ -0.72
HMGB3-205ENST00000455596 Q6ZVQ6 151 aa10.56□□□□□ -0.72
HMGB3-205ENST00000455596 PRR15Q8IV56 129 aa10.56□□□□□ -0.72
HMGB3-205ENST00000455596 MMP24-AS1A0A0U1RRL7 71 aa10.49□□□□□ -0.73
HMGB3-205ENST00000455596 TMEM254Q8TBM7 123 aa10.48□□□□□ -0.73
HMGB3-205ENST00000455596 MRPL34Q9BQ48 92 aaKnown RBP10.47□□□□□ -0.73
HMGB3-205ENST00000455596 K7EQZ3 153 aa10.45□□□□□ -0.74
HMGB3-205ENST00000455596 MT2AP02795 61 aa10.44□□□□□ -0.74
HMGB3-205ENST00000455596 hDV103S1A0JD37 113 aa10.43□□□□□ -0.74
HMGB3-205ENST00000455596 WFDC13Q8IUB5 93 aa10.43□□□□□ -0.74
HMGB3-205ENST00000455596 SPCS1Q9Y6A9 102 aa10.43□□□□□ -0.74
HMGB3-205ENST00000455596 BPY2O14599 106 aa10.42□□□□□ -0.74
HMGB3-205ENST00000455596 NDUFS5O43920 106 aa10.39□□□□□ -0.75
HMGB3-205ENST00000455596 MT1FP04733 61 aa10.36□□□□□ -0.75
HMGB3-205ENST00000455596 KRTAP10-10P60014 251 aa10.34□□□□□ -0.75
HMGB3-205ENST00000455596 SMCPP49901 116 aaPredicted RBP10.33□□□□□ -0.76
HMGB3-205ENST00000455596 COL5A1-AS1Q5SY13 56 aa10.33□□□□□ -0.76
HMGB3-205ENST00000455596 Q8N9L7 120 aa10.28□□□□□ -0.76
HMGB3-205ENST00000455596 CASC2Q6XLA1 102 aa10.27□□□□□ -0.77
HMGB3-205ENST00000455596 KRTAP9-3Q9BYQ3 159 aa10.26□□□□□ -0.77
HMGB3-205ENST00000455596 PRO0461Q9UI25 63 aa10.26□□□□□ -0.77
HMGB3-205ENST00000455596 K7EP34 96 aa10.25□□□□□ -0.77
HMGB3-205ENST00000455596 Q5W150 140 aa10.24□□□□□ -0.77
HMGB3-205ENST00000455596 IGKV2D-30A0A075B6S6 120 aa10.23□□□□□ -0.77
HMGB3-205ENST00000455596 IGKV2-30P06310 120 aa10.23□□□□□ -0.77
HMGB3-205ENST00000455596 C7orf65Q6ZTY9 151 aa10.23□□□□□ -0.77
HMGB3-205ENST00000455596 UBL5Q9BZL1 73 aa10.23□□□□□ -0.77
HMGB3-205ENST00000455596 HCG22E2RYF7 251 aa10.22□□□□□ -0.77
HMGB3-205ENST00000455596 LINC00846Q9NV44 126 aa10.22□□□□□ -0.77
HMGB3-205ENST00000455596 LCE2BO14633 110 aa10.21□□□□□ -0.77
HMGB3-205ENST00000455596 H1FX-AS1Q4G0G2 97 aa10.21□□□□□ -0.77
HMGB3-205ENST00000455596 CXCL6P80162 114 aa10.16□□□□□ -0.78
HMGB3-205ENST00000455596 USH2AO75445 5202 aa10.14□□□□□ -0.79
HMGB3-205ENST00000455596 GTF2H5Q6ZYL4 71 aa10.13□□□□□ -0.79
HMGB3-205ENST00000455596 F8W1H4 67 aa10.07□□□□□ -0.8
HMGB3-205ENST00000455596 C4orf26Q17RF5 130 aa10.05□□□□□ -0.8
HMGB3-205ENST00000455596 KRTAP19-1Q8IUB9 90 aa10.05□□□□□ -0.8
HMGB3-205ENST00000455596 SSPOA2VEC9 5147 aa10.04□□□□□ -0.8
HMGB3-205ENST00000455596 PCP4L1A6NKN8 68 aa10.04□□□□□ -0.8
HMGB3-205ENST00000455596 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.04□□□□□ -0.8
HMGB3-205ENST00000455596 ETDBQ3ZM63 59 aa10.02□□□□□ -0.81
HMGB3-205ENST00000455596 TP53AIP1Q9HCN2 124 aa9.97□□□□□ -0.81
HMGB3-205ENST00000455596 KRTAP9-7A8MTY7 169 aa9.93□□□□□ -0.82
HMGB3-205ENST00000455596 C1orf64Q8NEQ6 169 aa9.88□□□□□ -0.83
HMGB3-205ENST00000455596 KRTAP3-1Q9BYR8 98 aa9.88□□□□□ -0.83
HMGB3-205ENST00000455596 KRTAP19-6Q3LI70 58 aa9.87□□□□□ -0.83
HMGB3-205ENST00000455596 C5orf47Q569G3 176 aa9.86□□□□□ -0.83
HMGB3-205ENST00000455596 FCGBPQ9Y6R7 5405 aaPredicted RBP9.86□□□□□ -0.83
HMGB3-205ENST00000455596 S4R3F8 94 aa9.85□□□□□ -0.83
HMGB3-205ENST00000455596 ACYP1P07311 99 aa9.83□□□□□ -0.84
HMGB3-205ENST00000455596 CSAG1Q6PB30 78 aa9.77□□□□□ -0.85
HMGB3-205ENST00000455596 LCA10Q71F78 164 aa9.77□□□□□ -0.85
HMGB3-205ENST00000455596 FAM236AA0A1B0GUQ0 79 aa9.76□□□□□ -0.85
HMGB3-205ENST00000455596 FAM236BA0A1B0GV22 79 aa9.76□□□□□ -0.85
HMGB3-205ENST00000455596 FAM240AA0A1B0GVK7 77 aa9.76□□□□□ -0.85
HMGB3-205ENST00000455596 TRAV22A0A0B4J277 110 aa9.75□□□□□ -0.85
HMGB3-205ENST00000455596 ATP5EP2Q5VTU8 51 aa9.75□□□□□ -0.85
HMGB3-205ENST00000455596 CYP4F30PQ9H0H9 118 aa9.75□□□□□ -0.85
HMGB3-205ENST00000455596 LOC101927531A0A1B0GV80 90 aa9.7□□□□□ -0.86
HMGB3-205ENST00000455596 HIST1H4AP62805 103 aaKnown RBP9.7□□□□□ -0.86
HMGB3-205ENST00000455596 UQCRQO14949 82 aa9.63□□□□□ -0.87
HMGB3-205ENST00000455596 KRTAP3-3Q9BYR6 98 aa9.61□□□□□ -0.87
HMGB3-205ENST00000455596 MACF1Q9UPN3 7388 aaKnown RBP9.6□□□□□ -0.87
HMGB3-205ENST00000455596 H0Y9P7 68 aa9.59□□□□□ -0.87
HMGB3-205ENST00000455596 ATOX1O00244 68 aa9.59□□□□□ -0.87
HMGB3-205ENST00000455596 LINC00643Q86TS7 51 aa9.57□□□□□ -0.88
HMGB3-205ENST00000455596 SPRR2GQ9BYE4 73 aa9.56□□□□□ -0.88
HMGB3-205ENST00000455596 A0A087WVE0 104 aa9.55□□□□□ -0.88
HMGB3-205ENST00000455596 KLKP1Q107X0 134 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms