RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 NBDYA0A0U1RRE5 68 aa2.16□□□□□ -2.06
VPS29-202ENST00000447578 FAM236DA0A1B0GTK5 79 aa2.16□□□□□ -2.06
VPS29-202ENST00000447578 SPRR5A0A1B0GTR4 108 aa2.16□□□□□ -2.06
VPS29-202ENST00000447578 A0A1B0GW54 56 aa2.16□□□□□ -2.06
VPS29-202ENST00000447578 FAM236CP0DP71 79 aa2.16□□□□□ -2.06
VPS29-202ENST00000447578 RPS28P62857 69 aaKnown RBP2.16□□□□□ -2.06
VPS29-202ENST00000447578 DPH3Q96FX2 82 aa2.16□□□□□ -2.06
VPS29-202ENST00000447578 SPRR4Q96PI1 79 aa2.16□□□□□ -2.06
VPS29-202ENST00000447578 TENM4Q6N022 2769 aa2.15□□□□□ -2.06
VPS29-202ENST00000447578 NBPF19A0A087WUL8 3843 aa2.15□□□□□ -2.06
VPS29-202ENST00000447578 CHD6Q8TD26 2715 aa2.15□□□□□ -2.06
VPS29-202ENST00000447578 MYO9AB2RTY4 2548 aa2.15□□□□□ -2.07
VPS29-202ENST00000447578 H7BZZ5 65 aa2.15□□□□□ -2.07
VPS29-202ENST00000447578 KLKP1Q107X0 134 aa2.15□□□□□ -2.07
VPS29-202ENST00000447578 C9orf163Q8N9P6 203 aa2.15□□□□□ -2.07
VPS29-202ENST00000447578 UNC79Q9P2D8 2635 aa2.15□□□□□ -2.07
VPS29-202ENST00000447578 MTORP42345 2549 aa2.14□□□□□ -2.07
VPS29-202ENST00000447578 SETXQ7Z333 2677 aaKnown RBP2.14□□□□□ -2.07
VPS29-202ENST00000447578 A0A087WSZ3 146 aa2.14□□□□□ -2.07
VPS29-202ENST00000447578 K7EQZ3 153 aa2.14□□□□□ -2.07
VPS29-202ENST00000447578 NDUFC1O43677 76 aa2.14□□□□□ -2.07
VPS29-202ENST00000447578 Q6ZRN7 208 aaPredicted RBP2.14□□□□□ -2.07
VPS29-202ENST00000447578 LINC00304Q8N9R0 145 aa2.14□□□□□ -2.07
VPS29-202ENST00000447578 TMEM254Q8TBM7 123 aa2.14□□□□□ -2.07
VPS29-202ENST00000447578 LINC00474Q9P2X8 69 aa2.14□□□□□ -2.07
VPS29-202ENST00000447578 JMJD1CQ15652 2540 aa2.14□□□□□ -2.07
VPS29-202ENST00000447578 A0A087WTM6 91 aa2.13□□□□□ -2.07
VPS29-202ENST00000447578 HCG22E2RYF7 251 aa2.13□□□□□ -2.07
VPS29-202ENST00000447578 H3BPC8 53 aa2.13□□□□□ -2.07
VPS29-202ENST00000447578 SPRR1BP22528 89 aa2.13□□□□□ -2.07
VPS29-202ENST00000447578 SERP1Q9Y6X1 66 aa2.13□□□□□ -2.07
VPS29-202ENST00000447578 RPL37AP61513 92 aaKnown RBP2.12□□□□□ -2.07
VPS29-202ENST00000447578 WFDC13Q8IUB5 93 aa2.12□□□□□ -2.07
VPS29-202ENST00000447578 SPACA4Q8TDM5 124 aa2.12□□□□□ -2.07
VPS29-202ENST00000447578 P0C880 135 aa2.11□□□□□ -2.07
VPS29-202ENST00000447578 ATP5EP56381 51 aaPredicted RBP2.11□□□□□ -2.07
VPS29-202ENST00000447578 KRTAP13-1Q8IUC0 172 aa2.11□□□□□ -2.07
VPS29-202ENST00000447578 HECTD1Q9ULT8 2610 aa2.11□□□□□ -2.07
VPS29-202ENST00000447578 OTOGQ6ZRI0 2925 aa2.11□□□□□ -2.07
VPS29-202ENST00000447578 HUWE1Q7Z6Z7 4374 aaKnown RBP2.1□□□□□ -2.07
VPS29-202ENST00000447578 CENPEQ02224 2701 aa2.1□□□□□ -2.07
VPS29-202ENST00000447578 LCE6AA0A183 80 aa2.1□□□□□ -2.07
VPS29-202ENST00000447578 LY6G6CO95867 125 aa2.1□□□□□ -2.07
VPS29-202ENST00000447578 C1orf134Q5TEV5 83 aa2.1□□□□□ -2.07
VPS29-202ENST00000447578 Q5XG85 94 aa2.1□□□□□ -2.07
VPS29-202ENST00000447578 HRCT1Q6UXD1 115 aa2.1□□□□□ -2.07
VPS29-202ENST00000447578 CASC2Q6XLA1 102 aa2.1□□□□□ -2.07
VPS29-202ENST00000447578 PRR15Q8IV56 129 aa2.1□□□□□ -2.07
VPS29-202ENST00000447578 F8P00451 2351 aa2.09□□□□□ -2.07
VPS29-202ENST00000447578 HIVEP1P15822 2718 aa2.09□□□□□ -2.07
VPS29-202ENST00000447578 ZCCHC13Q8WW36 166 aaKnown RBP2.09□□□□□ -2.07
VPS29-202ENST00000447578 LINC00472Q9H8W2 130 aa2.09□□□□□ -2.07
VPS29-202ENST00000447578 PSORS1C2Q9UIG4 136 aa2.09□□□□□ -2.07
VPS29-202ENST00000447578 SETD2Q9BYW2 2564 aaPredicted RBP2.08□□□□□ -2.08
VPS29-202ENST00000447578 HELZ2Q9BYK8 2649 aaKnown RBP2.08□□□□□ -2.08
VPS29-202ENST00000447578 ITPR2Q14571 2701 aa2.08□□□□□ -2.08
VPS29-202ENST00000447578 DNAH1Q9P2D7 4330 aa2.08□□□□□ -2.08
VPS29-202ENST00000447578 MAP1AP78559 2803 aaPredicted RBP2.08□□□□□ -2.08
VPS29-202ENST00000447578 NDUFB1O75438 58 aa2.08□□□□□ -2.08
VPS29-202ENST00000447578 PLAC8Q9NZF1 115 aa2.08□□□□□ -2.08
VPS29-202ENST00000447578 NSD1Q96L73 2696 aaPredicted RBP2.08□□□□□ -2.08
VPS29-202ENST00000447578 MMP24-AS1A0A0U1RRL7 71 aa2.07□□□□□ -2.08
VPS29-202ENST00000447578 H0Y9P7 68 aa2.07□□□□□ -2.08
VPS29-202ENST00000447578 FP248Q71RG6 208 aaPredicted RBP2.07□□□□□ -2.08
VPS29-202ENST00000447578 LINC00208Q96KT6 92 aa2.07□□□□□ -2.08
VPS29-202ENST00000447578 Q96NJ1 140 aa2.07□□□□□ -2.08
VPS29-202ENST00000447578 TRAV22A0A0B4J277 110 aa2.06□□□□□ -2.08
VPS29-202ENST00000447578 hDV103S1A0JD37 113 aa2.06□□□□□ -2.08
VPS29-202ENST00000447578 C20orf166-AS1Q96NR2 134 aa2.06□□□□□ -2.08
VPS29-202ENST00000447578 TEP1Q99973 2627 aaKnown RBP2.06□□□□□ -2.08
VPS29-202ENST00000447578 NBEAL2Q6ZNJ1 2754 aa2.06□□□□□ -2.08
VPS29-202ENST00000447578 NF1P21359 2839 aa2.06□□□□□ -2.08
VPS29-202ENST00000447578 ATRQ13535 2644 aa2.05□□□□□ -2.08
VPS29-202ENST00000447578 GCN1Q92616 2671 aaKnown RBP2.05□□□□□ -2.08
VPS29-202ENST00000447578 FBN1P35555 2871 aaKnown RBP2.05□□□□□ -2.08
VPS29-202ENST00000447578 ASB16-AS1Q495Z4 193 aa2.04□□□□□ -2.08
VPS29-202ENST00000447578 SPINK6Q6UWN8 80 aa2.04□□□□□ -2.08
VPS29-202ENST00000447578 MRPL34Q9BQ48 92 aaKnown RBP2.04□□□□□ -2.08
VPS29-202ENST00000447578 CYP4F30PQ9H0H9 118 aa2.04□□□□□ -2.08
VPS29-202ENST00000447578 TP53AIP1Q9HCN2 124 aa2.04□□□□□ -2.08
VPS29-202ENST00000447578 TENM1Q9UKZ4 2725 aa2.04□□□□□ -2.08
VPS29-202ENST00000447578 VWFP04275 2813 aa2.03□□□□□ -2.08
VPS29-202ENST00000447578 TRRAPQ9Y4A5 3859 aa2.03□□□□□ -2.08
VPS29-202ENST00000447578 PCOTHQ58A44 107 aa2.03□□□□□ -2.08
VPS29-202ENST00000447578 SSBP3-AS1Q7Z2R9 100 aa2.03□□□□□ -2.08
VPS29-202ENST00000447578 DNAH3Q8TD57 4116 aa2.03□□□□□ -2.08
VPS29-202ENST00000447578 NIPBLQ6KC79 2804 aaeCLIP2.03□□□□□ -2.09
VPS29-202ENST00000447578 TENM3Q9P273 2699 aa2.02□□□□□ -2.09
VPS29-202ENST00000447578 CMYA5Q8N3K9 4069 aa2.02□□□□□ -2.09
VPS29-202ENST00000447578 DNAH9Q9NYC9 4486 aa2.02□□□□□ -2.09
VPS29-202ENST00000447578 BAHCC1Q9P281 2608 aa2□□□□□ -2.09
VPS29-202ENST00000447578 Q1T7F1 81 aa2□□□□□ -2.09
VPS29-202ENST00000447578 Q6ZSA8 131 aa2□□□□□ -2.09
VPS29-202ENST00000447578 BRK1Q8WUW1 75 aa2□□□□□ -2.09
VPS29-202ENST00000447578 ANK2Q01484 3957 aa1.99□□□□□ -2.09
VPS29-202ENST00000447578 KTN1-AS1Q86SY8 53 aa1.99□□□□□ -2.09
VPS29-202ENST00000447578 COA5Q86WW8 74 aa1.99□□□□□ -2.09
VPS29-202ENST00000447578 RETNLBQ9BQ08 111 aa1.99□□□□□ -2.09
VPS29-202ENST00000447578 MAST4O15021 2626 aa1.99□□□□□ -2.09
VPS29-202ENST00000447578 DYNC2H1Q8NCM8 4307 aaKnown RBP1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms