RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 COX6CP09669 75 aa7.18□□□□□ -1.26
SDC1-204ENST00000429035 C8orf87E5RJ46 101 aa7.17□□□□□ -1.26
SDC1-204ENST00000429035 LCE2BO14633 110 aa7.17□□□□□ -1.26
SDC1-204ENST00000429035 SMIM6P0DI80 62 aa7.17□□□□□ -1.26
SDC1-204ENST00000429035 HSD52Q0P140 79 aa7.17□□□□□ -1.26
SDC1-204ENST00000429035 KRTAP19-1Q8IUB9 90 aa7.17□□□□□ -1.26
SDC1-204ENST00000429035 A0A1B0GVX0 72 aa7.16□□□□□ -1.26
SDC1-204ENST00000429035 MTURNQ8N3F0 131 aa7.15□□□□□ -1.26
SDC1-204ENST00000429035 UBE2V1Q13404 147 aa7.14□□□□□ -1.27
SDC1-204ENST00000429035 KRTAP9-3Q9BYQ3 159 aa7.13□□□□□ -1.27
SDC1-204ENST00000429035 ZCCHC13Q8WW36 166 aaKnown RBP7.12□□□□□ -1.27
SDC1-204ENST00000429035 DSCR8Q96T75 97 aa7.12□□□□□ -1.27
SDC1-204ENST00000429035 FCGBPQ9Y6R7 5405 aaPredicted RBP7.11□□□□□ -1.27
SDC1-204ENST00000429035 RBM3P98179 157 aaKnown RBP7.1□□□□□ -1.27
SDC1-204ENST00000429035 SCGB1C2P0DMR2 95 aa7.09□□□□□ -1.27
SDC1-204ENST00000429035 SPINK7P58062 85 aa7.09□□□□□ -1.27
SDC1-204ENST00000429035 LYRM7Q5U5X0 104 aa7.08□□□□□ -1.28
SDC1-204ENST00000429035 UQCR10Q9UDW1 63 aa7.07□□□□□ -1.28
SDC1-204ENST00000429035 J3KT08 172 aa7.06□□□□□ -1.28
SDC1-204ENST00000429035 WFDC13Q8IUB5 93 aa7.06□□□□□ -1.28
SDC1-204ENST00000429035 C9JAW5 83 aa7.05□□□□□ -1.28
SDC1-204ENST00000429035 NDUFB1O75438 58 aa7.05□□□□□ -1.28
SDC1-204ENST00000429035 LINC00846Q9NV44 126 aa7.02□□□□□ -1.29
SDC1-204ENST00000429035 A8MWP4 228 aa7.01□□□□□ -1.29
SDC1-204ENST00000429035 BAALC-AS2P0C853 105 aa7.01□□□□□ -1.29
SDC1-204ENST00000429035 C21orf62-AS1Q17RA5 79 aa7.01□□□□□ -1.29
SDC1-204ENST00000429035 Q6ZQT0 140 aa7.01□□□□□ -1.29
SDC1-204ENST00000429035 C8orf17Q9NRJ1 99 aa7.01□□□□□ -1.29
SDC1-204ENST00000429035 Q8N9P0 234 aaPredicted RBP7□□□□□ -1.29
SDC1-204ENST00000429035 MACF1Q9UPN3 7388 aaKnown RBP7□□□□□ -1.29
SDC1-204ENST00000429035 SYNE2Q8WXH0 6885 aaKnown RBP6.95□□□□□ -1.3
SDC1-204ENST00000429035 IGKV3D-7A0A0C4DH55 119 aa6.95□□□□□ -1.3
SDC1-204ENST00000429035 Q6ZVQ6 151 aa6.95□□□□□ -1.3
SDC1-204ENST00000429035 TSTD3H0UI37 97 aa6.94□□□□□ -1.3
SDC1-204ENST00000429035 NAA38Q9BRA0 125 aaKnown RBP6.94□□□□□ -1.3
SDC1-204ENST00000429035 ATXN8Q156A1 80 aa6.93□□□□□ -1.3
SDC1-204ENST00000429035 KRTAP19-6Q3LI70 58 aa6.93□□□□□ -1.3
SDC1-204ENST00000429035 JMJD7-PLA2G4BH0Y9G9 81 aa6.92□□□□□ -1.3
SDC1-204ENST00000429035 M0R143 59 aa6.92□□□□□ -1.3
SDC1-204ENST00000429035 C14orf132Q9NPU4 83 aa6.91□□□□□ -1.3
SDC1-204ENST00000429035 LOC110117498A0A087WWA1 95 aa6.9□□□□□ -1.3
SDC1-204ENST00000429035 NDUFS5O43920 106 aa6.89□□□□□ -1.31
SDC1-204ENST00000429035 PRR15Q8IV56 129 aa6.88□□□□□ -1.31
SDC1-204ENST00000429035 MRPL34Q9BQ48 92 aaKnown RBP6.88□□□□□ -1.31
SDC1-204ENST00000429035 MMP24-AS1A0A0U1RRL7 71 aa6.87□□□□□ -1.31
SDC1-204ENST00000429035 NREPQ16612 68 aa6.87□□□□□ -1.31
SDC1-204ENST00000429035 TMEM254Q8TBM7 123 aa6.87□□□□□ -1.31
SDC1-204ENST00000429035 A0A1B0GW54 56 aa6.86□□□□□ -1.31
SDC1-204ENST00000429035 PDE6GP18545 87 aa6.86□□□□□ -1.31
SDC1-204ENST00000429035 H1FX-AS1Q4G0G2 97 aa6.85□□□□□ -1.31
SDC1-204ENST00000429035 IGKV2D-30A0A075B6S6 120 aa6.84□□□□□ -1.31
SDC1-204ENST00000429035 IGKV2-30P06310 120 aa6.84□□□□□ -1.31
SDC1-204ENST00000429035 hDV103S1A0JD37 113 aa6.82□□□□□ -1.32
SDC1-204ENST00000429035 K7EQZ3 153 aa6.82□□□□□ -1.32
SDC1-204ENST00000429035 BATFQ16520 125 aa6.79□□□□□ -1.32
SDC1-204ENST00000429035 C7orf65Q6ZTY9 151 aa6.79□□□□□ -1.32
SDC1-204ENST00000429035 TAX1BP3O14907 124 aa6.76□□□□□ -1.33
SDC1-204ENST00000429035 BPY2O14599 106 aa6.74□□□□□ -1.33
SDC1-204ENST00000429035 KRTAP6-3Q3LI67 103 aa6.73□□□□□ -1.33
SDC1-204ENST00000429035 C9orf118A6NHY6 69 aa6.72□□□□□ -1.33
SDC1-204ENST00000429035 Q5W150 140 aa6.72□□□□□ -1.33
SDC1-204ENST00000429035 FAM236AA0A1B0GUQ0 79 aa6.71□□□□□ -1.34
SDC1-204ENST00000429035 FAM236BA0A1B0GV22 79 aa6.71□□□□□ -1.34
SDC1-204ENST00000429035 HCG22E2RYF7 251 aa6.71□□□□□ -1.34
SDC1-204ENST00000429035 C4orf26Q17RF5 130 aa6.71□□□□□ -1.34
SDC1-204ENST00000429035 Q8N9L7 120 aa6.7□□□□□ -1.34
SDC1-204ENST00000429035 CASC2Q6XLA1 102 aa6.69□□□□□ -1.34
SDC1-204ENST00000429035 A0A1W2PPM0 123 aa6.68□□□□□ -1.34
SDC1-204ENST00000429035 H3BT86 120 aa6.68□□□□□ -1.34
SDC1-204ENST00000429035 C5orf47Q569G3 176 aa6.68□□□□□ -1.34
SDC1-204ENST00000429035 COL5A1-AS1Q5SY13 56 aa6.67□□□□□ -1.34
SDC1-204ENST00000429035 PCP4L1A6NKN8 68 aa6.63□□□□□ -1.35
SDC1-204ENST00000429035 A6NN06 94 aa6.62□□□□□ -1.35
SDC1-204ENST00000429035 CXCL6P80162 114 aa6.61□□□□□ -1.35
SDC1-204ENST00000429035 S4R3F8 94 aa6.61□□□□□ -1.35
SDC1-204ENST00000429035 Q5VV11 94 aa6.59□□□□□ -1.35
SDC1-204ENST00000429035 PRO0461Q9UI25 63 aa6.59□□□□□ -1.35
SDC1-204ENST00000429035 SPCS1Q9Y6A9 102 aa6.58□□□□□ -1.36
SDC1-204ENST00000429035 K7EP34 96 aa6.56□□□□□ -1.36
SDC1-204ENST00000429035 MT1BP07438 61 aa6.55□□□□□ -1.36
SDC1-204ENST00000429035 SMCPP49901 116 aaPredicted RBP6.55□□□□□ -1.36
SDC1-204ENST00000429035 NEBP20929 6669 aa6.54□□□□□ -1.36
SDC1-204ENST00000429035 CSAG1Q6PB30 78 aa6.54□□□□□ -1.36
SDC1-204ENST00000429035 C1orf64Q8NEQ6 169 aa6.54□□□□□ -1.36
SDC1-204ENST00000429035 LCA10Q71F78 164 aa6.53□□□□□ -1.36
SDC1-204ENST00000429035 KRTAP3-1Q9BYR8 98 aa6.52□□□□□ -1.37
SDC1-204ENST00000429035 UBL5Q9BZL1 73 aa6.52□□□□□ -1.37
SDC1-204ENST00000429035 GTF2H5Q6ZYL4 71 aa6.5□□□□□ -1.37
SDC1-204ENST00000429035 KRTAP19-8Q3LI54 63 aa6.48□□□□□ -1.37
SDC1-204ENST00000429035 SPRR2GQ9BYE4 73 aa6.48□□□□□ -1.37
SDC1-204ENST00000429035 KLKP1Q107X0 134 aa6.46□□□□□ -1.38
SDC1-204ENST00000429035 MUC12Q9UKN1 5478 aa6.46□□□□□ -1.38
SDC1-204ENST00000429035 IMUPQ9GZP8 106 aa6.45□□□□□ -1.38
SDC1-204ENST00000429035 F8W1H4 67 aa6.44□□□□□ -1.38
SDC1-204ENST00000429035 KRTAP10-5P60370 271 aa6.44□□□□□ -1.38
SDC1-204ENST00000429035 KRTAP20-1Q3LI63 56 aa6.41□□□□□ -1.38
SDC1-204ENST00000429035 TP53AIP1Q9HCN2 124 aa6.41□□□□□ -1.38
SDC1-204ENST00000429035 KRTAP3-3Q9BYR6 98 aa6.36□□□□□ -1.39
SDC1-204ENST00000429035 ETDBQ3ZM63 59 aa6.35□□□□□ -1.39
SDC1-204ENST00000429035 A0A1B0GV90 55 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms