RNA–Protein interactions for RNA: ENST00000421939.5

CDK9-202, Transcript of cyclin dependent kinase 9, humanhuman

TSL 3

Gene CDK9, Length 702 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-202ENST00000421939 NOTCH2NLQ7Z3S9 236 aa13.77□□□□□ -0.21
CDK9-202ENST00000421939 C14orf132Q9NPU4 83 aa13.76□□□□□ -0.21
CDK9-202ENST00000421939 A0A1B0GW54 56 aa13.74□□□□□ -0.21
CDK9-202ENST00000421939 COX6B2Q6YFQ2 88 aa13.74□□□□□ -0.21
CDK9-202ENST00000421939 A0A1B0GVX0 72 aa13.73□□□□□ -0.21
CDK9-202ENST00000421939 J3KT08 172 aa13.73□□□□□ -0.21
CDK9-202ENST00000421939 C8orf87E5RJ46 101 aa13.71□□□□□ -0.21
CDK9-202ENST00000421939 H3BT86 120 aa13.7□□□□□ -0.22
CDK9-202ENST00000421939 KRTAP9-2Q9BYQ4 174 aa13.69□□□□□ -0.22
CDK9-202ENST00000421939 MTURNQ8N3F0 131 aa13.67□□□□□ -0.22
CDK9-202ENST00000421939 NDUFB1O75438 58 aa13.61□□□□□ -0.23
CDK9-202ENST00000421939 SPCS1Q9Y6A9 102 aa13.6□□□□□ -0.23
CDK9-202ENST00000421939 FLGP20930 4061 aaPredicted RBP13.59□□□□□ -0.23
CDK9-202ENST00000421939 A8MWP4 228 aa13.58□□□□□ -0.24
CDK9-202ENST00000421939 COL5A1-AS1Q5SY13 56 aa13.56□□□□□ -0.24
CDK9-202ENST00000421939 NREPQ16612 68 aa13.54□□□□□ -0.24
CDK9-202ENST00000421939 M0R2T5 61 aa13.53□□□□□ -0.24
CDK9-202ENST00000421939 IGKV3D-7A0A0C4DH55 119 aa13.52□□□□□ -0.25
CDK9-202ENST00000421939 C8orf17Q9NRJ1 99 aa13.5□□□□□ -0.25
CDK9-202ENST00000421939 KRTAP10-6P60371 365 aaPredicted RBP13.47□□□□□ -0.25
CDK9-202ENST00000421939 LORP23490 312 aaPredicted RBP13.46□□□□□ -0.25
CDK9-202ENST00000421939 Q8N9P0 234 aaPredicted RBP13.45□□□□□ -0.26
CDK9-202ENST00000421939 SMCPP49901 116 aaPredicted RBP13.44□□□□□ -0.26
CDK9-202ENST00000421939 PRR15Q8IV56 129 aa13.44□□□□□ -0.26
CDK9-202ENST00000421939 ZCCHC13Q8WW36 166 aaKnown RBP13.44□□□□□ -0.26
CDK9-202ENST00000421939 K7EP34 96 aa13.4□□□□□ -0.26
CDK9-202ENST00000421939 LCE2DQ5TA82 110 aaPredicted RBP13.4□□□□□ -0.26
CDK9-202ENST00000421939 Q6ZVQ6 151 aa13.39□□□□□ -0.27
CDK9-202ENST00000421939 PRO0461Q9UI25 63 aa13.38□□□□□ -0.27
CDK9-202ENST00000421939 HRES1P13985 223 aa13.37□□□□□ -0.27
CDK9-202ENST00000421939 MMP24-AS1A0A0U1RRL7 71 aa13.34□□□□□ -0.27
CDK9-202ENST00000421939 K7EQZ3 153 aa13.34□□□□□ -0.27
CDK9-202ENST00000421939 MPLKIPQ8TAP9 179 aa13.34□□□□□ -0.27
CDK9-202ENST00000421939 FAM236DA0A1B0GTK5 79 aa13.33□□□□□ -0.28
CDK9-202ENST00000421939 PCP4L1A6NKN8 68 aa13.33□□□□□ -0.28
CDK9-202ENST00000421939 BPY2O14599 106 aa13.33□□□□□ -0.28
CDK9-202ENST00000421939 FAM236CP0DP71 79 aa13.33□□□□□ -0.28
CDK9-202ENST00000421939 RBM12B-AS1Q9P1G2 102 aa13.32□□□□□ -0.28
CDK9-202ENST00000421939 TMEM254Q8TBM7 123 aa13.3□□□□□ -0.28
CDK9-202ENST00000421939 MRPL34Q9BQ48 92 aaKnown RBP13.28□□□□□ -0.28
CDK9-202ENST00000421939 SPINK7P58062 85 aa13.27□□□□□ -0.29
CDK9-202ENST00000421939 hDV103S1A0JD37 113 aa13.26□□□□□ -0.29
CDK9-202ENST00000421939 GTF2H5Q6ZYL4 71 aa13.26□□□□□ -0.29
CDK9-202ENST00000421939 Q8N9L7 120 aa13.18□□□□□ -0.3
CDK9-202ENST00000421939 LINC00846Q9NV44 126 aa13.18□□□□□ -0.3
CDK9-202ENST00000421939 KRTAP9-6A0A140TA67 174 aa13.17□□□□□ -0.3
CDK9-202ENST00000421939 UBL5Q9BZL1 73 aa13.17□□□□□ -0.3
CDK9-202ENST00000421939 NDUFS5O43920 106 aa13.16□□□□□ -0.3
CDK9-202ENST00000421939 F8W1H4 67 aa13.13□□□□□ -0.31
CDK9-202ENST00000421939 WFDC13Q8IUB5 93 aa13.12□□□□□ -0.31
CDK9-202ENST00000421939 CASC2Q6XLA1 102 aa13.09□□□□□ -0.31
CDK9-202ENST00000421939 ETDBQ3ZM63 59 aa13.07□□□□□ -0.32
CDK9-202ENST00000421939 KRTAP9-8Q9BYQ0 159 aa13.05□□□□□ -0.32
CDK9-202ENST00000421939 FSIP2Q5CZC0 6907 aa13.02□□□□□ -0.32
CDK9-202ENST00000421939 HCG22E2RYF7 251 aa13□□□□□ -0.33
CDK9-202ENST00000421939 Q5W150 140 aa12.99□□□□□ -0.33
CDK9-202ENST00000421939 CRCT1Q9UGL9 99 aa12.97□□□□□ -0.33
CDK9-202ENST00000421939 IGKV2D-30A0A075B6S6 120 aa12.94□□□□□ -0.34
CDK9-202ENST00000421939 IGKV2-30P06310 120 aa12.94□□□□□ -0.34
CDK9-202ENST00000421939 C7orf65Q6ZTY9 151 aa12.93□□□□□ -0.34
CDK9-202ENST00000421939 CXCL6P80162 114 aa12.92□□□□□ -0.34
CDK9-202ENST00000421939 MT2AP02795 61 aa12.89□□□□□ -0.35
CDK9-202ENST00000421939 MT1FP04733 61 aa12.79□□□□□ -0.36
CDK9-202ENST00000421939 ACYP1P07311 99 aa12.78□□□□□ -0.36
CDK9-202ENST00000421939 H1FX-AS1Q4G0G2 97 aa12.78□□□□□ -0.36
CDK9-202ENST00000421939 FAM240AA0A1B0GVK7 77 aa12.75□□□□□ -0.37
CDK9-202ENST00000421939 KRTAP10-10P60014 251 aa12.73□□□□□ -0.37
CDK9-202ENST00000421939 TP53AIP1Q9HCN2 124 aa12.72□□□□□ -0.37
CDK9-202ENST00000421939 C4orf26Q17RF5 130 aa12.68□□□□□ -0.38
CDK9-202ENST00000421939 USH2AO75445 5202 aa12.68□□□□□ -0.38
CDK9-202ENST00000421939 ATP5EP2Q5VTU8 51 aa12.65□□□□□ -0.38
CDK9-202ENST00000421939 KRTAP9-3Q9BYQ3 159 aa12.63□□□□□ -0.39
CDK9-202ENST00000421939 A0A1B0GV90 55 aa12.61□□□□□ -0.39
CDK9-202ENST00000421939 HIST1H4AP62805 103 aaKnown RBP12.54□□□□□ -0.4
CDK9-202ENST00000421939 SSPOA2VEC9 5147 aa12.54□□□□□ -0.4
CDK9-202ENST00000421939 LCE2BO14633 110 aa12.52□□□□□ -0.41
CDK9-202ENST00000421939 TRAV22A0A0B4J277 110 aa12.48□□□□□ -0.41
CDK9-202ENST00000421939 LINC00643Q86TS7 51 aa12.48□□□□□ -0.41
CDK9-202ENST00000421939 KRTAP3-1Q9BYR8 98 aa12.48□□□□□ -0.41
CDK9-202ENST00000421939 C1orf64Q8NEQ6 169 aa12.47□□□□□ -0.41
CDK9-202ENST00000421939 CYP4F30PQ9H0H9 118 aa12.43□□□□□ -0.42
CDK9-202ENST00000421939 LOC101927531A0A1B0GV80 90 aa12.4□□□□□ -0.42
CDK9-202ENST00000421939 A0A087WVE0 104 aa12.39□□□□□ -0.43
CDK9-202ENST00000421939 S4R3F8 94 aa12.39□□□□□ -0.43
CDK9-202ENST00000421939 UQCRQO14949 82 aa12.38□□□□□ -0.43
CDK9-202ENST00000421939 C5orf47Q569G3 176 aa12.36□□□□□ -0.43
CDK9-202ENST00000421939 H0Y9P7 68 aa12.31□□□□□ -0.44
CDK9-202ENST00000421939 ATOX1O00244 68 aa12.3□□□□□ -0.44
CDK9-202ENST00000421939 LCA10Q71F78 164 aa12.3□□□□□ -0.44
CDK9-202ENST00000421939 J3QR89 54 aa12.28□□□□□ -0.44
CDK9-202ENST00000421939 CSAG1Q6PB30 78 aa12.26□□□□□ -0.45
CDK9-202ENST00000421939 KRTAP19-1Q8IUB9 90 aa12.24□□□□□ -0.45
CDK9-202ENST00000421939 FCGBPQ9Y6R7 5405 aaPredicted RBP12.21□□□□□ -0.45
CDK9-202ENST00000421939 FAM236AA0A1B0GUQ0 79 aa12.16□□□□□ -0.46
CDK9-202ENST00000421939 FAM236BA0A1B0GV22 79 aa12.16□□□□□ -0.46
CDK9-202ENST00000421939 OCR1Q9BZK8 76 aa12.16□□□□□ -0.46
CDK9-202ENST00000421939 KRTAP3-3Q9BYR6 98 aa12.13□□□□□ -0.47
CDK9-202ENST00000421939 LINC00208Q96KT6 92 aa12.12□□□□□ -0.47
CDK9-202ENST00000421939 MP68P56378 58 aa12.09□□□□□ -0.47
CDK9-202ENST00000421939 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 162 ms