RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ATP11AUNQ6ZP68 121 aa11.51□□□□□ -0.57
CLN3-207ENST00000395653 IGHV6-1A0A0B4J1U7 121 aa11.48□□□□□ -0.57
CLN3-207ENST00000395653 K7EP34 96 aa11.48□□□□□ -0.57
CLN3-207ENST00000395653 LCE2AQ5TA79 106 aaPredicted RBP11.47□□□□□ -0.57
CLN3-207ENST00000395653 A0A1B0GVX0 72 aa11.46□□□□□ -0.57
CLN3-207ENST00000395653 SMCPP49901 116 aaPredicted RBP11.46□□□□□ -0.57
CLN3-207ENST00000395653 KRTAP16-1A8MUX0 517 aa11.45□□□□□ -0.58
CLN3-207ENST00000395653 NOTCH2NLQ7Z3S9 236 aa11.45□□□□□ -0.58
CLN3-207ENST00000395653 C8orf87E5RJ46 101 aa11.44□□□□□ -0.58
CLN3-207ENST00000395653 PRO0461Q9UI25 63 aa11.43□□□□□ -0.58
CLN3-207ENST00000395653 NDUFB1O75438 58 aa11.41□□□□□ -0.58
CLN3-207ENST00000395653 NREPQ16612 68 aa11.41□□□□□ -0.58
CLN3-207ENST00000395653 GTF2H5Q6ZYL4 71 aa11.39□□□□□ -0.59
CLN3-207ENST00000395653 A8MWP4 228 aa11.38□□□□□ -0.59
CLN3-207ENST00000395653 KRTAP19-2Q3LHN2 52 aa11.37□□□□□ -0.59
CLN3-207ENST00000395653 LCE2CQ5TA81 110 aa11.35□□□□□ -0.59
CLN3-207ENST00000395653 IGKV3D-7A0A0C4DH55 119 aa11.33□□□□□ -0.6
CLN3-207ENST00000395653 C8orf17Q9NRJ1 99 aa11.29□□□□□ -0.6
CLN3-207ENST00000395653 F8W1H4 67 aa11.28□□□□□ -0.6
CLN3-207ENST00000395653 PRR15Q8IV56 129 aa11.28□□□□□ -0.6
CLN3-207ENST00000395653 Q6ZVQ6 151 aa11.24□□□□□ -0.61
CLN3-207ENST00000395653 BPY2O14599 106 aa11.23□□□□□ -0.61
CLN3-207ENST00000395653 Q8N9P0 234 aaPredicted RBP11.23□□□□□ -0.61
CLN3-207ENST00000395653 COX6B2Q6YFQ2 88 aa11.21□□□□□ -0.61
CLN3-207ENST00000395653 K7EQZ3 153 aa11.2□□□□□ -0.62
CLN3-207ENST00000395653 MT1HP80294 61 aa11.18□□□□□ -0.62
CLN3-207ENST00000395653 ETDBQ3ZM63 59 aa11.18□□□□□ -0.62
CLN3-207ENST00000395653 MMP24-AS1A0A0U1RRL7 71 aa11.18□□□□□ -0.62
CLN3-207ENST00000395653 LINC00846Q9NV44 126 aa11.18□□□□□ -0.62
CLN3-207ENST00000395653 ZCCHC13Q8WW36 166 aaKnown RBP11.17□□□□□ -0.62
CLN3-207ENST00000395653 UBL5Q9BZL1 73 aa11.17□□□□□ -0.62
CLN3-207ENST00000395653 TMEM254Q8TBM7 123 aa11.16□□□□□ -0.62
CLN3-207ENST00000395653 MRPL34Q9BQ48 92 aaKnown RBP11.13□□□□□ -0.63
CLN3-207ENST00000395653 hDV103S1A0JD37 113 aa11.11□□□□□ -0.63
CLN3-207ENST00000395653 Q8N9L7 120 aa11.09□□□□□ -0.63
CLN3-207ENST00000395653 HRES1P13985 223 aa11.04□□□□□ -0.64
CLN3-207ENST00000395653 FLGP20930 4061 aaPredicted RBP11.02□□□□□ -0.65
CLN3-207ENST00000395653 MPLKIPQ8TAP9 179 aa11.01□□□□□ -0.65
CLN3-207ENST00000395653 SPINK7P58062 85 aa11.01□□□□□ -0.65
CLN3-207ENST00000395653 CASC2Q6XLA1 102 aa11.01□□□□□ -0.65
CLN3-207ENST00000395653 WFDC13Q8IUB5 93 aa11.01□□□□□ -0.65
CLN3-207ENST00000395653 NDUFS5O43920 106 aa11□□□□□ -0.65
CLN3-207ENST00000395653 M0R2T5 61 aa10.99□□□□□ -0.65
CLN3-207ENST00000395653 RBM12B-AS1Q9P1G2 102 aa10.99□□□□□ -0.65
CLN3-207ENST00000395653 CXCL6P80162 114 aa10.96□□□□□ -0.65
CLN3-207ENST00000395653 A0A1B0GV90 55 aa10.95□□□□□ -0.66
CLN3-207ENST00000395653 ACYP1P07311 99 aa10.95□□□□□ -0.66
CLN3-207ENST00000395653 FAM236DA0A1B0GTK5 79 aa10.94□□□□□ -0.66
CLN3-207ENST00000395653 FAM236CP0DP71 79 aa10.94□□□□□ -0.66
CLN3-207ENST00000395653 HCG22E2RYF7 251 aa10.93□□□□□ -0.66
CLN3-207ENST00000395653 FAM240AA0A1B0GVK7 77 aa10.92□□□□□ -0.66
CLN3-207ENST00000395653 KRTAP10-6P60371 365 aaPredicted RBP10.92□□□□□ -0.66
CLN3-207ENST00000395653 LORP23490 312 aaPredicted RBP10.91□□□□□ -0.66
CLN3-207ENST00000395653 KRTAP9-2Q9BYQ4 174 aa10.89□□□□□ -0.67
CLN3-207ENST00000395653 Q5W150 140 aa10.86□□□□□ -0.67
CLN3-207ENST00000395653 ATP5EP2Q5VTU8 51 aa10.79□□□□□ -0.68
CLN3-207ENST00000395653 C7orf65Q6ZTY9 151 aa10.78□□□□□ -0.68
CLN3-207ENST00000395653 IGKV2D-30A0A075B6S6 120 aa10.77□□□□□ -0.68
CLN3-207ENST00000395653 IGKV2-30P06310 120 aa10.77□□□□□ -0.68
CLN3-207ENST00000395653 LCE2DQ5TA82 110 aaPredicted RBP10.76□□□□□ -0.69
CLN3-207ENST00000395653 TP53AIP1Q9HCN2 124 aa10.74□□□□□ -0.69
CLN3-207ENST00000395653 LINC00643Q86TS7 51 aa10.69□□□□□ -0.7
CLN3-207ENST00000395653 HIST1H4AP62805 103 aaKnown RBP10.66□□□□□ -0.7
CLN3-207ENST00000395653 J3QR89 54 aa10.63□□□□□ -0.71
CLN3-207ENST00000395653 KRTAP9-8Q9BYQ0 159 aa10.63□□□□□ -0.71
CLN3-207ENST00000395653 H1FX-AS1Q4G0G2 97 aa10.59□□□□□ -0.71
CLN3-207ENST00000395653 C4orf26Q17RF5 130 aa10.55□□□□□ -0.72
CLN3-207ENST00000395653 A0A087WVE0 104 aa10.54□□□□□ -0.72
CLN3-207ENST00000395653 TRAV22A0A0B4J277 110 aa10.52□□□□□ -0.73
CLN3-207ENST00000395653 MT2AP02795 61 aa10.51□□□□□ -0.73
CLN3-207ENST00000395653 UQCRQO14949 82 aa10.48□□□□□ -0.73
CLN3-207ENST00000395653 LOC101927531A0A1B0GV80 90 aa10.45□□□□□ -0.74
CLN3-207ENST00000395653 CYP4F30PQ9H0H9 118 aa10.45□□□□□ -0.74
CLN3-207ENST00000395653 KRTAP9-6A0A140TA67 174 aa10.42□□□□□ -0.74
CLN3-207ENST00000395653 MT1FP04733 61 aa10.42□□□□□ -0.74
CLN3-207ENST00000395653 ATOX1O00244 68 aa10.41□□□□□ -0.74
CLN3-207ENST00000395653 C1orf64Q8NEQ6 169 aa10.41□□□□□ -0.74
CLN3-207ENST00000395653 KRTAP3-1Q9BYR8 98 aa10.41□□□□□ -0.74
CLN3-207ENST00000395653 FSIP2Q5CZC0 6907 aa10.39□□□□□ -0.75
CLN3-207ENST00000395653 H0Y9P7 68 aa10.39□□□□□ -0.75
CLN3-207ENST00000395653 KRTAP10-10P60014 251 aa10.37□□□□□ -0.75
CLN3-207ENST00000395653 K7ERU9 68 aa10.35□□□□□ -0.75
CLN3-207ENST00000395653 OCR1Q9BZK8 76 aa10.34□□□□□ -0.75
CLN3-207ENST00000395653 CRCT1Q9UGL9 99 aa10.34□□□□□ -0.75
CLN3-207ENST00000395653 KRTAP9-3Q9BYQ3 159 aa10.28□□□□□ -0.76
CLN3-207ENST00000395653 S4R3F8 94 aa10.28□□□□□ -0.76
CLN3-207ENST00000395653 IMUPQ9GZP8 106 aa10.26□□□□□ -0.77
CLN3-207ENST00000395653 MP68P56378 58 aa10.25□□□□□ -0.77
CLN3-207ENST00000395653 LINC00208Q96KT6 92 aa10.25□□□□□ -0.77
CLN3-207ENST00000395653 C5orf47Q569G3 176 aa10.23□□□□□ -0.77
CLN3-207ENST00000395653 SCGB1A1P11684 91 aa10.22□□□□□ -0.77
CLN3-207ENST00000395653 LCA10Q71F78 164 aa10.22□□□□□ -0.77
CLN3-207ENST00000395653 MT-ATP8P03928 68 aa10.21□□□□□ -0.78
CLN3-207ENST00000395653 CSAG1Q6PB30 78 aa10.18□□□□□ -0.78
CLN3-207ENST00000395653 H3BPC8 53 aa10.16□□□□□ -0.78
CLN3-207ENST00000395653 LCE2BO14633 110 aa10.16□□□□□ -0.78
CLN3-207ENST00000395653 USH2AO75445 5202 aa10.14□□□□□ -0.79
CLN3-207ENST00000395653 KLKP1Q107X0 134 aa10.14□□□□□ -0.79
CLN3-207ENST00000395653 A8MUN3 132 aa10.1□□□□□ -0.79
CLN3-207ENST00000395653 KRTAP3-3Q9BYR6 98 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms