RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 MEIG1Q5JSS6 88 aa-2.63□□□□□ -2.83
RNU6-540P-201ENST00000384622 JAKMIP1Q96N16 626 aaKnown RBP-2.63□□□□□ -2.83
RNU6-540P-201ENST00000384622 GLTPQ9NZD2 209 aa-2.63□□□□□ -2.83
RNU6-540P-201ENST00000384622 HIGD1AQ9Y241 93 aa-2.63□□□□□ -2.83
RNU6-540P-201ENST00000384622 SAMD9LQ8IVG5 1584 aa-2.63□□□□□ -2.83
RNU6-540P-201ENST00000384622 PIGBOS1A0A0B4J2F0 54 aa-2.64□□□□□ -2.83
RNU6-540P-201ENST00000384622 A6NDN8 102 aa-2.64□□□□□ -2.83
RNU6-540P-201ENST00000384622 UMAD1C9J7I0 102 aa-2.64□□□□□ -2.83
RNU6-540P-201ENST00000384622 CIB2O75838 187 aa-2.64□□□□□ -2.83
RNU6-540P-201ENST00000384622 Q56UQ5 140 aa-2.64□□□□□ -2.83
RNU6-540P-201ENST00000384622 HSP90AB2PQ58FF8 381 aa-2.64□□□□□ -2.83
RNU6-540P-201ENST00000384622 LINC01545Q5VT33 79 aa-2.64□□□□□ -2.83
RNU6-540P-201ENST00000384622 C5orf46Q6UWT4 87 aa-2.64□□□□□ -2.83
RNU6-540P-201ENST00000384622 TOMM6Q96B49 74 aa-2.64□□□□□ -2.83
RNU6-540P-201ENST00000384622 MANBALQ9NQG1 85 aa-2.64□□□□□ -2.83
RNU6-540P-201ENST00000384622 CHRAC1Q9NRG0 131 aa-2.64□□□□□ -2.83
RNU6-540P-201ENST00000384622 HPF1Q9NWY4 346 aa-2.64□□□□□ -2.83
RNU6-540P-201ENST00000384622 SYCE3A1L190 88 aa-2.65□□□□□ -2.83
RNU6-540P-201ENST00000384622 SMIM13P0DJ93 91 aa-2.65□□□□□ -2.83
RNU6-540P-201ENST00000384622 LCN1P31025 176 aa-2.65□□□□□ -2.83
RNU6-540P-201ENST00000384622 OTUD6BQ8N6M0 293 aa-2.65□□□□□ -2.83
RNU6-540P-201ENST00000384622 EFHD2Q96C19 240 aaPredicted RBP-2.65□□□□□ -2.83
RNU6-540P-201ENST00000384622 SPANXDQ9BXN6 97 aa-2.65□□□□□ -2.83
RNU6-540P-201ENST00000384622 C6orf50Q9HD87 102 aa-2.65□□□□□ -2.83
RNU6-540P-201ENST00000384622 AHSPQ9NZD4 102 aa-2.65□□□□□ -2.83
RNU6-540P-201ENST00000384622 SSR3Q9UNL2 185 aa-2.65□□□□□ -2.83
RNU6-540P-201ENST00000384622 PIN4Q9Y237 131 aaKnown RBP-2.65□□□□□ -2.83
RNU6-540P-201ENST00000384622 EFCAB5A4FU69 1503 aa-2.66□□□□□ -2.84
RNU6-540P-201ENST00000384622 ERICH2A1L162 156 aa-2.66□□□□□ -2.84
RNU6-540P-201ENST00000384622 SMCO3A2RU48 225 aa-2.66□□□□□ -2.84
RNU6-540P-201ENST00000384622 S100GP29377 79 aa-2.66□□□□□ -2.84
RNU6-540P-201ENST00000384622 PPP1R2P41236 205 aa-2.66□□□□□ -2.84
RNU6-540P-201ENST00000384622 PSME3P61289 254 aa-2.66□□□□□ -2.84
RNU6-540P-201ENST00000384622 CBX3Q13185 183 aa-2.66□□□□□ -2.84
RNU6-540P-201ENST00000384622 ANKRD36BP1Q96IX9 119 aa-2.66□□□□□ -2.84
RNU6-540P-201ENST00000384622 PPP1R2P1Q96PQ5 205 aa-2.66□□□□□ -2.84
RNU6-540P-201ENST00000384622 PKIBQ9C010 78 aa-2.66□□□□□ -2.84
RNU6-540P-201ENST00000384622 APOA4P06727 396 aa-2.67□□□□□ -2.84
RNU6-540P-201ENST00000384622 DBIP07108 87 aaKnown RBP-2.67□□□□□ -2.84
RNU6-540P-201ENST00000384622 TNNC1P63316 161 aa-2.67□□□□□ -2.84
RNU6-540P-201ENST00000384622 CCL7P80098 99 aa-2.67□□□□□ -2.84
RNU6-540P-201ENST00000384622 PMAIP1Q13794 54 aa-2.67□□□□□ -2.84
RNU6-540P-201ENST00000384622 PEA15Q15121 130 aa-2.67□□□□□ -2.84
RNU6-540P-201ENST00000384622 FAM9CQ8IZT9 166 aa-2.67□□□□□ -2.84
RNU6-540P-201ENST00000384622 TMEM35BQ8NCS4 154 aa-2.67□□□□□ -2.84
RNU6-540P-201ENST00000384622 C1orf109Q9NX04 203 aa-2.67□□□□□ -2.84
RNU6-540P-201ENST00000384622 ARL2BPQ9Y2Y0 163 aa-2.67□□□□□ -2.84
RNU6-540P-201ENST00000384622 DNAJC15Q9Y5T4 150 aa-2.67□□□□□ -2.84
RNU6-540P-201ENST00000384622 FAM240AA0A1B0GVK7 77 aa-2.68□□□□□ -2.84
RNU6-540P-201ENST00000384622 SSNA1O43805 119 aa-2.68□□□□□ -2.84
RNU6-540P-201ENST00000384622 TBCAO75347 108 aaKnown RBP-2.68□□□□□ -2.84
RNU6-540P-201ENST00000384622 RPL31P62899 125 aaKnown RBP-2.68□□□□□ -2.84
RNU6-540P-201ENST00000384622 BLOC1S2Q6QNY1 142 aa-2.68□□□□□ -2.84
RNU6-540P-201ENST00000384622 CHMP4AQ9BY43 222 aa-2.68□□□□□ -2.84
RNU6-540P-201ENST00000384622 LZTFL1Q9NQ48 299 aa-2.68□□□□□ -2.84
RNU6-540P-201ENST00000384622 SNTNA6NMZ2 147 aa-2.69□□□□□ -2.84
RNU6-540P-201ENST00000384622 LINC00587B1AMM8 73 aa-2.69□□□□□ -2.84
RNU6-540P-201ENST00000384622 NDUFA2O43678 99 aa-2.69□□□□□ -2.84
RNU6-540P-201ENST00000384622 H2BFSP57053 126 aa-2.69□□□□□ -2.84
RNU6-540P-201ENST00000384622 PMCHL1Q16048 86 aa-2.69□□□□□ -2.84
RNU6-540P-201ENST00000384622 CCDC89Q8N998 374 aa-2.69□□□□□ -2.84
RNU6-540P-201ENST00000384622 PRO1854Q9UHT4 67 aa-2.69□□□□□ -2.84
RNU6-540P-201ENST00000384622 TMEM56-RWDD3S4R434 201 aa-2.69□□□□□ -2.84
RNU6-540P-201ENST00000384622 HIST1H1BP16401 226 aaKnown RBP-2.7□□□□□ -2.84
RNU6-540P-201ENST00000384622 HMGN3Q15651 99 aa-2.7□□□□□ -2.84
RNU6-540P-201ENST00000384622 SPTSSAQ969W0 71 aa-2.7□□□□□ -2.84
RNU6-540P-201ENST00000384622 SPANXCQ9NY87 97 aa-2.7□□□□□ -2.84
RNU6-540P-201ENST00000384622 CFL2Q9Y281 166 aa-2.7□□□□□ -2.84
RNU6-540P-201ENST00000384622 F6UZH7 168 aa-2.71□□□□□ -2.84
RNU6-540P-201ENST00000384622 KRTDAPP60985 99 aa-2.71□□□□□ -2.84
RNU6-540P-201ENST00000384622 RPS25P62851 125 aaKnown RBP-2.71□□□□□ -2.84
RNU6-540P-201ENST00000384622 RCN2Q14257 317 aa-2.71□□□□□ -2.84
RNU6-540P-201ENST00000384622 ETDBQ3ZM63 59 aa-2.71□□□□□ -2.84
RNU6-540P-201ENST00000384622 C4orf50Q6ZRC1 276 aa-2.71□□□□□ -2.84
RNU6-540P-201ENST00000384622 COX16Q9P0S2 106 aa-2.71□□□□□ -2.84
RNU6-540P-201ENST00000384622 GNG12Q9UBI6 72 aa-2.71□□□□□ -2.84
RNU6-540P-201ENST00000384622 CACFD1Q9UGQ2 172 aa-2.71□□□□□ -2.84
RNU6-540P-201ENST00000384622 WRBO00258 174 aa-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 GNG7O60262 68 aa-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 LINC00614P0C842 121 aa-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 SMIM10L2AP0DMW4 78 aa-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 SMIM10L2BP0DMW5 78 aa-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 MYL12AP19105 171 aa-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 CFL1P23528 166 aaKnown RBP-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 RPL22P35268 128 aaKnown RBP-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 MYL6P60660 151 aa-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 PET117Q6UWS5 81 aa-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 TMCO2Q7Z6W1 182 aaPredicted RBP-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 SKA2Q8WVK7 121 aaPredicted RBP-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 ATP6V1E2Q96A05 226 aa-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 PMCHL2Q9BQD1 86 aa-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 V9GYY9 64 aa-2.72□□□□□ -2.84
RNU6-540P-201ENST00000384622 SMLR1H3BR10 107 aa-2.73□□□□□ -2.85
RNU6-540P-201ENST00000384622 CASQ2O14958 399 aaPredicted RBP-2.73□□□□□ -2.85
RNU6-540P-201ENST00000384622 NDUFB6O95139 128 aa-2.73□□□□□ -2.85
RNU6-540P-201ENST00000384622 CCL1P22362 96 aa-2.73□□□□□ -2.85
RNU6-540P-201ENST00000384622 HSPE1P61604 102 aaKnown RBP-2.73□□□□□ -2.85
RNU6-540P-201ENST00000384622 PRAP1Q96NZ9 151 aa-2.73□□□□□ -2.85
RNU6-540P-201ENST00000384622 MYCBPQ99417 103 aaPredicted RBP-2.73□□□□□ -2.85
RNU6-540P-201ENST00000384622 TSC22D3Q99576 134 aa-2.73□□□□□ -2.85
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms