RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 NOTCH2NLQ7Z3S9 236 aa7.09□□□□□ -1.27
VPS28-202ENST00000377348 IGHV6-1A0A0B4J1U7 121 aa7.08□□□□□ -1.28
VPS28-202ENST00000377348 LINC00313P59037 77 aa7.08□□□□□ -1.28
VPS28-202ENST00000377348 C21orf62-AS1Q17RA5 79 aa7.08□□□□□ -1.28
VPS28-202ENST00000377348 C20orf166-AS1Q96NR2 134 aa7.07□□□□□ -1.28
VPS28-202ENST00000377348 A0A1B0GW54 56 aa7.06□□□□□ -1.28
VPS28-202ENST00000377348 A8MUU9 505 aa7.06□□□□□ -1.28
VPS28-202ENST00000377348 KRTAP16-1A8MUX0 517 aa7.05□□□□□ -1.28
VPS28-202ENST00000377348 ATP11AUNQ6ZP68 121 aa7.05□□□□□ -1.28
VPS28-202ENST00000377348 A0A1B0GVX0 72 aa7.04□□□□□ -1.28
VPS28-202ENST00000377348 LCE2AQ5TA79 106 aaPredicted RBP7.04□□□□□ -1.28
VPS28-202ENST00000377348 J3KT08 172 aa7.03□□□□□ -1.28
VPS28-202ENST00000377348 ETDBQ3ZM63 59 aa7.03□□□□□ -1.28
VPS28-202ENST00000377348 NREPQ16612 68 aa7.01□□□□□ -1.29
VPS28-202ENST00000377348 C8orf87E5RJ46 101 aa7□□□□□ -1.29
VPS28-202ENST00000377348 KRTAP19-2Q3LHN2 52 aa7□□□□□ -1.29
VPS28-202ENST00000377348 LCE2CQ5TA81 110 aa6.99□□□□□ -1.29
VPS28-202ENST00000377348 IGKV3D-7A0A0C4DH55 119 aa6.98□□□□□ -1.29
VPS28-202ENST00000377348 A8MWP4 228 aa6.98□□□□□ -1.29
VPS28-202ENST00000377348 NDUFB1O75438 58 aa6.98□□□□□ -1.29
VPS28-202ENST00000377348 C8orf17Q9NRJ1 99 aa6.95□□□□□ -1.3
VPS28-202ENST00000377348 PRR15Q8IV56 129 aa6.93□□□□□ -1.3
VPS28-202ENST00000377348 Q6ZVQ6 151 aa6.92□□□□□ -1.3
VPS28-202ENST00000377348 K7EQZ3 153 aa6.91□□□□□ -1.3
VPS28-202ENST00000377348 BPY2O14599 106 aa6.9□□□□□ -1.3
VPS28-202ENST00000377348 MT1HP80294 61 aa6.89□□□□□ -1.31
VPS28-202ENST00000377348 COX6B2Q6YFQ2 88 aa6.89□□□□□ -1.31
VPS28-202ENST00000377348 LINC00846Q9NV44 126 aa6.89□□□□□ -1.31
VPS28-202ENST00000377348 MMP24-AS1A0A0U1RRL7 71 aa6.88□□□□□ -1.31
VPS28-202ENST00000377348 Q8N9P0 234 aaPredicted RBP6.88□□□□□ -1.31
VPS28-202ENST00000377348 Q8N9L7 120 aa6.87□□□□□ -1.31
VPS28-202ENST00000377348 FLGP20930 4061 aaPredicted RBP6.86□□□□□ -1.31
VPS28-202ENST00000377348 ZCCHC13Q8WW36 166 aaKnown RBP6.86□□□□□ -1.31
VPS28-202ENST00000377348 FAM240AA0A1B0GVK7 77 aa6.84□□□□□ -1.31
VPS28-202ENST00000377348 TMEM254Q8TBM7 123 aa6.84□□□□□ -1.31
VPS28-202ENST00000377348 UBL5Q9BZL1 73 aa6.84□□□□□ -1.31
VPS28-202ENST00000377348 hDV103S1A0JD37 113 aa6.83□□□□□ -1.32
VPS28-202ENST00000377348 MRPL34Q9BQ48 92 aaKnown RBP6.83□□□□□ -1.32
VPS28-202ENST00000377348 WFDC13Q8IUB5 93 aa6.8□□□□□ -1.32
VPS28-202ENST00000377348 HRES1P13985 223 aa6.79□□□□□ -1.32
VPS28-202ENST00000377348 NDUFS5O43920 106 aa6.78□□□□□ -1.32
VPS28-202ENST00000377348 ACYP1P07311 99 aa6.77□□□□□ -1.33
VPS28-202ENST00000377348 SPINK7P58062 85 aa6.77□□□□□ -1.33
VPS28-202ENST00000377348 J3QR89 54 aa6.76□□□□□ -1.33
VPS28-202ENST00000377348 K7ERU9 68 aa6.76□□□□□ -1.33
VPS28-202ENST00000377348 M0R2T5 61 aa6.76□□□□□ -1.33
VPS28-202ENST00000377348 CASC2Q6XLA1 102 aa6.76□□□□□ -1.33
VPS28-202ENST00000377348 MPLKIPQ8TAP9 179 aa6.76□□□□□ -1.33
VPS28-202ENST00000377348 FAM236DA0A1B0GTK5 79 aa6.73□□□□□ -1.33
VPS28-202ENST00000377348 FAM236CP0DP71 79 aa6.73□□□□□ -1.33
VPS28-202ENST00000377348 HCG22E2RYF7 251 aa6.72□□□□□ -1.33
VPS28-202ENST00000377348 KRTAP10-6P60371 365 aaPredicted RBP6.72□□□□□ -1.33
VPS28-202ENST00000377348 RBM12B-AS1Q9P1G2 102 aa6.72□□□□□ -1.33
VPS28-202ENST00000377348 Q5W150 140 aa6.71□□□□□ -1.34
VPS28-202ENST00000377348 LORP23490 312 aaPredicted RBP6.7□□□□□ -1.34
VPS28-202ENST00000377348 CXCL6P80162 114 aa6.7□□□□□ -1.34
VPS28-202ENST00000377348 KRTAP9-2Q9BYQ4 174 aa6.7□□□□□ -1.34
VPS28-202ENST00000377348 LINC00643Q86TS7 51 aa6.67□□□□□ -1.34
VPS28-202ENST00000377348 IGKV2D-30A0A075B6S6 120 aa6.65□□□□□ -1.34
VPS28-202ENST00000377348 IGKV2-30P06310 120 aa6.65□□□□□ -1.34
VPS28-202ENST00000377348 ATP5EP2Q5VTU8 51 aa6.63□□□□□ -1.35
VPS28-202ENST00000377348 MT-ATP8P03928 68 aa6.61□□□□□ -1.35
VPS28-202ENST00000377348 C7orf65Q6ZTY9 151 aa6.6□□□□□ -1.35
VPS28-202ENST00000377348 LCE2DQ5TA82 110 aaPredicted RBP6.58□□□□□ -1.36
VPS28-202ENST00000377348 HIST1H4AP62805 103 aaKnown RBP6.57□□□□□ -1.36
VPS28-202ENST00000377348 A0A087WVE0 104 aa6.55□□□□□ -1.36
VPS28-202ENST00000377348 TP53AIP1Q9HCN2 124 aa6.55□□□□□ -1.36
VPS28-202ENST00000377348 KRTAP9-8Q9BYQ0 159 aa6.54□□□□□ -1.36
VPS28-202ENST00000377348 C4orf26Q17RF5 130 aa6.52□□□□□ -1.37
VPS28-202ENST00000377348 IMUPQ9GZP8 106 aa6.51□□□□□ -1.37
VPS28-202ENST00000377348 H1FX-AS1Q4G0G2 97 aa6.49□□□□□ -1.37
VPS28-202ENST00000377348 MT2AP02795 61 aa6.48□□□□□ -1.37
VPS28-202ENST00000377348 FSIP2Q5CZC0 6907 aa6.46□□□□□ -1.38
VPS28-202ENST00000377348 TRAV22A0A0B4J277 110 aa6.45□□□□□ -1.38
VPS28-202ENST00000377348 MT1FP04733 61 aa6.43□□□□□ -1.38
VPS28-202ENST00000377348 KRTAP3-1Q9BYR8 98 aa6.43□□□□□ -1.38
VPS28-202ENST00000377348 UQCRQO14949 82 aa6.42□□□□□ -1.38
VPS28-202ENST00000377348 CYP4F30PQ9H0H9 118 aa6.42□□□□□ -1.38
VPS28-202ENST00000377348 FAM236AA0A1B0GUQ0 79 aa6.41□□□□□ -1.38
VPS28-202ENST00000377348 FAM236BA0A1B0GV22 79 aa6.41□□□□□ -1.38
VPS28-202ENST00000377348 KRTAP9-6A0A140TA67 174 aa6.4□□□□□ -1.38
VPS28-202ENST00000377348 H0Y9P7 68 aa6.4□□□□□ -1.38
VPS28-202ENST00000377348 C1orf64Q8NEQ6 169 aa6.4□□□□□ -1.38
VPS28-202ENST00000377348 LOC101927531A0A1B0GV80 90 aa6.39□□□□□ -1.39
VPS28-202ENST00000377348 KRTAP10-10P60014 251 aa6.39□□□□□ -1.39
VPS28-202ENST00000377348 OCR1Q9BZK8 76 aa6.38□□□□□ -1.39
VPS28-202ENST00000377348 ATOX1O00244 68 aa6.35□□□□□ -1.39
VPS28-202ENST00000377348 CRCT1Q9UGL9 99 aa6.35□□□□□ -1.39
VPS28-202ENST00000377348 KRTAP9-3Q9BYQ3 159 aa6.33□□□□□ -1.4
VPS28-202ENST00000377348 USH2AO75445 5202 aa6.33□□□□□ -1.4
VPS28-202ENST00000377348 S4R3F8 94 aa6.32□□□□□ -1.4
VPS28-202ENST00000377348 C5orf47Q569G3 176 aa6.31□□□□□ -1.4
VPS28-202ENST00000377348 LINC00208Q96KT6 92 aa6.31□□□□□ -1.4
VPS28-202ENST00000377348 LCA10Q71F78 164 aa6.3□□□□□ -1.4
VPS28-202ENST00000377348 SCGB1A1P11684 91 aa6.29□□□□□ -1.4
VPS28-202ENST00000377348 MP68P56378 58 aa6.28□□□□□ -1.4
VPS28-202ENST00000377348 LCE2BO14633 110 aa6.27□□□□□ -1.41
VPS28-202ENST00000377348 KLKP1Q107X0 134 aa6.27□□□□□ -1.41
VPS28-202ENST00000377348 SSPOA2VEC9 5147 aa6.27□□□□□ -1.41
VPS28-202ENST00000377348 TRAV7A0A075B6U4 112 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms