RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 TNP2Q05952 138 aa7.06□□□□□ -1.28
USP3-206ENST00000558157 LELP1Q5T871 98 aa7.06□□□□□ -1.28
USP3-206ENST00000558157 DHRS4-AS1Q9P1J3 65 aa7.06□□□□□ -1.28
USP3-206ENST00000558157 Q75L30 129 aa7.06□□□□□ -1.28
USP3-206ENST00000558157 ST20-AS1Q8NBB2 130 aa7.06□□□□□ -1.28
USP3-206ENST00000558157 LINC00208Q96KT6 92 aa7.06□□□□□ -1.28
USP3-206ENST00000558157 C1orf137Q5JT78 98 aa7.05□□□□□ -1.28
USP3-206ENST00000558157 K7EQZ3 153 aa7.05□□□□□ -1.28
USP3-206ENST00000558157 DEFB131BA0A096LNP1 70 aa7.04□□□□□ -1.28
USP3-206ENST00000558157 LOC101927531A0A1B0GV80 90 aa7.03□□□□□ -1.28
USP3-206ENST00000558157 CAMK2N2Q96S95 79 aa7.03□□□□□ -1.28
USP3-206ENST00000558157 PRR4Q16378 134 aa7.02□□□□□ -1.28
USP3-206ENST00000558157 STAB2Q8WWQ8 2551 aa7.02□□□□□ -1.29
USP3-206ENST00000558157 DEFB105AQ8NG35 78 aa7.02□□□□□ -1.29
USP3-206ENST00000558157 A6NN06 94 aa7.01□□□□□ -1.29
USP3-206ENST00000558157 A8MU10 97 aa7.01□□□□□ -1.29
USP3-206ENST00000558157 H3BNG1 76 aa7.01□□□□□ -1.29
USP3-206ENST00000558157 PRR15LQ9BU68 103 aa7.01□□□□□ -1.29
USP3-206ENST00000558157 CDC42SE1Q9NRR8 79 aa6.99□□□□□ -1.29
USP3-206ENST00000558157 DYNC2H1Q8NCM8 4307 aaKnown RBP6.99□□□□□ -1.29
USP3-206ENST00000558157 Q6ZRX8 168 aa6.99□□□□□ -1.29
USP3-206ENST00000558157 SPTSSBQ8NFR3 76 aa6.99□□□□□ -1.29
USP3-206ENST00000558157 LCA10Q71F78 164 aa6.98□□□□□ -1.29
USP3-206ENST00000558157 NKAPP1Q8N9T2 125 aa6.98□□□□□ -1.29
USP3-206ENST00000558157 A6NED7 52 aa6.98□□□□□ -1.29
USP3-206ENST00000558157 C7orf65Q6ZTY9 151 aa6.98□□□□□ -1.29
USP3-206ENST00000558157 DNAH7Q8WXX0 4024 aa6.97□□□□□ -1.29
USP3-206ENST00000558157 FBN3Q75N90 2809 aa6.97□□□□□ -1.29
USP3-206ENST00000558157 IGKV2D-24A0A075B6R9 120 aa6.96□□□□□ -1.3
USP3-206ENST00000558157 PLA2G2DQ9UNK4 145 aa6.96□□□□□ -1.3
USP3-206ENST00000558157 KRTAP4-16G5E9R7 235 aaPredicted RBP6.95□□□□□ -1.3
USP3-206ENST00000558157 H0Y9P7 68 aa6.95□□□□□ -1.3
USP3-206ENST00000558157 SPRR1AP35321 89 aa6.95□□□□□ -1.3
USP3-206ENST00000558157 KRTAP29-1A8MX34 341 aaPredicted RBP6.94□□□□□ -1.3
USP3-206ENST00000558157 C9orf163Q8N9P6 203 aa6.94□□□□□ -1.3
USP3-206ENST00000558157 C7orf33Q8WU49 177 aa6.94□□□□□ -1.3
USP3-206ENST00000558157 KRTAP26-1Q6PEX3 210 aa6.93□□□□□ -1.3
USP3-206ENST00000558157 WFDC10BQ8IUB3 73 aa6.93□□□□□ -1.3
USP3-206ENST00000558157 C15orf56Q8N910 161 aa6.93□□□□□ -1.3
USP3-206ENST00000558157 IGLV5-37A0A075B6J1 123 aa6.92□□□□□ -1.3
USP3-206ENST00000558157 CSMD3Q7Z407 3707 aa6.92□□□□□ -1.3
USP3-206ENST00000558157 IGLV7-46A0A075B6I9 117 aa6.91□□□□□ -1.3
USP3-206ENST00000558157 COA5Q86WW8 74 aa6.91□□□□□ -1.3
USP3-206ENST00000558157 WFDC13Q8IUB5 93 aa6.91□□□□□ -1.3
USP3-206ENST00000558157 LINC01558Q9Y6Z2 57 aa6.9□□□□□ -1.3
USP3-206ENST00000558157 PLECQ15149 4684 aaKnown RBP6.9□□□□□ -1.31
USP3-206ENST00000558157 TLX1NBP0CAT3 122 aa6.9□□□□□ -1.31
USP3-206ENST00000558157 STARD9Q9P2P6 4700 aa6.9□□□□□ -1.31
USP3-206ENST00000558157 IGLV1-50A0A075B6I6 118 aa6.89□□□□□ -1.31
USP3-206ENST00000558157 NUPR2A6NF83 97 aa6.89□□□□□ -1.31
USP3-206ENST00000558157 PLAC8Q9NZF1 115 aa6.89□□□□□ -1.31
USP3-206ENST00000558157 APLNQ9ULZ1 77 aa6.89□□□□□ -1.31
USP3-206ENST00000558157 SERTAD4-AS1Q5TG53 156 aa6.89□□□□□ -1.31
USP3-206ENST00000558157 LINC00476Q8WZB0 136 aa6.89□□□□□ -1.31
USP3-206ENST00000558157 CASC2Q6XLA1 102 aa6.88□□□□□ -1.31
USP3-206ENST00000558157 IGLV8-61A0A075B6I0 122 aa6.88□□□□□ -1.31
USP3-206ENST00000558157 LYSTQ99698 3801 aa6.87□□□□□ -1.31
USP3-206ENST00000558157 MOBPQ13875 183 aa6.87□□□□□ -1.31
USP3-206ENST00000558157 LINC01556Q5JQF7 62 aa6.86□□□□□ -1.31
USP3-206ENST00000558157 DNAH1Q9P2D7 4330 aa6.86□□□□□ -1.31
USP3-206ENST00000558157 DNAH10OSP0CZ25 163 aa6.85□□□□□ -1.31
USP3-206ENST00000558157 C4orf48Q5BLP8 95 aa6.85□□□□□ -1.31
USP3-206ENST00000558157 IGFL1Q6UW32 110 aa6.85□□□□□ -1.31
USP3-206ENST00000558157 TGP01266 2768 aa6.85□□□□□ -1.31
USP3-206ENST00000558157 CNBPP62633 177 aaKnown RBP6.85□□□□□ -1.31
USP3-206ENST00000558157 RPL37AP8A6NKH3 93 aa6.84□□□□□ -1.31
USP3-206ENST00000558157 DEFB116Q30KQ4 102 aa6.84□□□□□ -1.31
USP3-206ENST00000558157 UBE2DNLQ8IWF7 75 aa6.84□□□□□ -1.31
USP3-206ENST00000558157 A8MWP4 228 aa6.83□□□□□ -1.32
USP3-206ENST00000558157 VPS13DQ5THJ4 4388 aa6.83□□□□□ -1.32
USP3-206ENST00000558157 A0A087WSZ3 146 aa6.82□□□□□ -1.32
USP3-206ENST00000558157 C8orf87E5RJ46 101 aa6.82□□□□□ -1.32
USP3-206ENST00000558157 TENM2Q9NT68 2774 aa6.81□□□□□ -1.32
USP3-206ENST00000558157 WWC2-AS2Q96NR7 200 aa6.81□□□□□ -1.32
USP3-206ENST00000558157 ASB16-AS1Q495Z4 193 aa6.79□□□□□ -1.32
USP3-206ENST00000558157 TP53AIP1Q9HCN2 124 aa6.79□□□□□ -1.32
USP3-206ENST00000558157 REG3GQ6UW15 175 aa6.78□□□□□ -1.32
USP3-206ENST00000558157 KRTAP1-5Q9BYS1 174 aa6.78□□□□□ -1.32
USP3-206ENST00000558157 RPL37AP61513 92 aaKnown RBP6.78□□□□□ -1.32
USP3-206ENST00000558157 SPAG11AQ6PDA7 123 aa6.78□□□□□ -1.32
USP3-206ENST00000558157 A0A087X002 238 aa6.77□□□□□ -1.33
USP3-206ENST00000558157 LINC00472Q9H8W2 130 aa6.77□□□□□ -1.33
USP3-206ENST00000558157 ALMS1Q8TCU4 4167 aa6.76□□□□□ -1.33
USP3-206ENST00000558157 CASC10Q5T4H9 136 aa6.75□□□□□ -1.33
USP3-206ENST00000558157 FAM168BA1KXE4 195 aa6.75□□□□□ -1.33
USP3-206ENST00000558157 SPINK7P58062 85 aa6.75□□□□□ -1.33
USP3-206ENST00000558157 DNAH10Q8IVF4 4471 aa6.74□□□□□ -1.33
USP3-206ENST00000558157 KRTAP7-1Q8IUC3 87 aa6.74□□□□□ -1.33
USP3-206ENST00000558157 MMP24-AS1A0A0U1RRL7 71 aa6.74□□□□□ -1.33
USP3-206ENST00000558157 Q6ZR54 194 aa6.74□□□□□ -1.33
USP3-206ENST00000558157 NBDYA0A0U1RRE5 68 aa6.73□□□□□ -1.33
USP3-206ENST00000558157 DNAH6Q9C0G6 4158 aa6.73□□□□□ -1.33
USP3-206ENST00000558157 LINC00313P59037 77 aa6.72□□□□□ -1.33
USP3-206ENST00000558157 PLA2G1BP04054 148 aaKnown RBP6.72□□□□□ -1.33
USP3-206ENST00000558157 A0A0G2JQZ4 141 aa6.71□□□□□ -1.33
USP3-206ENST00000558157 A0A1W2PNN7 141 aa6.71□□□□□ -1.33
USP3-206ENST00000558157 SPRR1BP22528 89 aa6.7□□□□□ -1.34
USP3-206ENST00000558157 HRES1P13985 223 aa6.7□□□□□ -1.34
USP3-206ENST00000558157 PCOTHQ58A44 107 aa6.7□□□□□ -1.34
USP3-206ENST00000558157 LY6G6CO95867 125 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 203 ms