RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 NKAPP1Q8N9T2 125 aa4.94□□□□□ -1.62
USP28-215ENST00000545608 IGKV2-28A0A075B6P5 120 aa4.93□□□□□ -1.62
USP28-215ENST00000545608 IGKV2D-28P01615 120 aa4.93□□□□□ -1.62
USP28-215ENST00000545608 TRBV7-7A0A0K0K1E9 115 aa4.92□□□□□ -1.62
USP28-215ENST00000545608 PFN2P35080 140 aa4.92□□□□□ -1.62
USP28-215ENST00000545608 SFTA2Q6UW10 78 aa4.92□□□□□ -1.62
USP28-215ENST00000545608 RETNLBQ9BQ08 111 aa4.92□□□□□ -1.62
USP28-215ENST00000545608 A4D1N5 150 aa4.91□□□□□ -1.62
USP28-215ENST00000545608 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.91□□□□□ -1.62
USP28-215ENST00000545608 CCDC179H3BU77 68 aa4.91□□□□□ -1.62
USP28-215ENST00000545608 UQCRQO14949 82 aa4.91□□□□□ -1.62
USP28-215ENST00000545608 ZNF22P17026 224 aaPredicted RBP4.91□□□□□ -1.62
USP28-215ENST00000545608 PRLHP81277 87 aa4.91□□□□□ -1.62
USP28-215ENST00000545608 FAM229BQ4G0N7 80 aa4.91□□□□□ -1.62
USP28-215ENST00000545608 C5orf47Q569G3 176 aa4.91□□□□□ -1.62
USP28-215ENST00000545608 LCE3BQ5TA77 95 aa4.91□□□□□ -1.62
USP28-215ENST00000545608 OR13C6PQ8NH95 151 aa4.91□□□□□ -1.62
USP28-215ENST00000545608 SND1-IT1Q9HBX3 110 aa4.91□□□□□ -1.62
USP28-215ENST00000545608 J3KT08 172 aa4.9□□□□□ -1.63
USP28-215ENST00000545608 C9orf153Q5TBE3 101 aa4.9□□□□□ -1.63
USP28-215ENST00000545608 FAM19A1Q7Z5A9 133 aa4.9□□□□□ -1.63
USP28-215ENST00000545608 LINC00304Q8N9R0 145 aa4.9□□□□□ -1.63
USP28-215ENST00000545608 Q8NDZ9 215 aa4.9□□□□□ -1.63
USP28-215ENST00000545608 ZNF625Q96I27 306 aaPredicted RBP4.9□□□□□ -1.63
USP28-215ENST00000545608 A0A0U1RQV1 116 aa4.89□□□□□ -1.63
USP28-215ENST00000545608 A0A1B0GX51 115 aa4.89□□□□□ -1.63
USP28-215ENST00000545608 TMEM223A0PJW6 202 aa4.89□□□□□ -1.63
USP28-215ENST00000545608 H7C2G1 150 aa4.89□□□□□ -1.63
USP28-215ENST00000545608 M0R378 163 aa4.89□□□□□ -1.63
USP28-215ENST00000545608 TIMM17BO60830 172 aa4.89□□□□□ -1.63
USP28-215ENST00000545608 LINC00643Q86TS7 51 aa4.89□□□□□ -1.63
USP28-215ENST00000545608 MUSTN1Q8IVN3 82 aa4.89□□□□□ -1.63
USP28-215ENST00000545608 C3orf22Q8N5N4 141 aa4.89□□□□□ -1.63
USP28-215ENST00000545608 MUC2Q02817 5179 aa4.89□□□□□ -1.63
USP28-215ENST00000545608 A0A0J9YXY3 114 aa4.88□□□□□ -1.63
USP28-215ENST00000545608 RPS28P62857 69 aaKnown RBP4.88□□□□□ -1.63
USP28-215ENST00000545608 IGLV7-46A0A075B6I9 117 aa4.87□□□□□ -1.63
USP28-215ENST00000545608 TEX49A0A1B0GTD5 131 aa4.87□□□□□ -1.63
USP28-215ENST00000545608 ATOX1O00244 68 aa4.87□□□□□ -1.63
USP28-215ENST00000545608 LST1O00453 97 aa4.87□□□□□ -1.63
USP28-215ENST00000545608 COX17Q14061 63 aa4.87□□□□□ -1.63
USP28-215ENST00000545608 Q75L30 129 aa4.87□□□□□ -1.63
USP28-215ENST00000545608 TPRXLQ17RH7 258 aa4.86□□□□□ -1.63
USP28-215ENST00000545608 A0A0U1RRA0 63 aa4.85□□□□□ -1.63
USP28-215ENST00000545608 FAM236AA0A1B0GUQ0 79 aa4.85□□□□□ -1.63
USP28-215ENST00000545608 FAM236BA0A1B0GV22 79 aa4.85□□□□□ -1.63
USP28-215ENST00000545608 LINC00158P58513 81 aa4.85□□□□□ -1.63
USP28-215ENST00000545608 DAND5Q8N907 189 aa4.85□□□□□ -1.63
USP28-215ENST00000545608 HIGD2AQ9BW72 106 aa4.85□□□□□ -1.63
USP28-215ENST00000545608 TRACP01848 142 aa4.84□□□□□ -1.63
USP28-215ENST00000545608 TSPEAR-AS2P59090 65 aa4.84□□□□□ -1.63
USP28-215ENST00000545608 SPRR4Q96PI1 79 aa4.84□□□□□ -1.63
USP28-215ENST00000545608 PPDPFQ9H3Y8 114 aa4.84□□□□□ -1.63
USP28-215ENST00000545608 COX7CP15954 63 aa4.83□□□□□ -1.64
USP28-215ENST00000545608 TMEM258P61165 79 aa4.83□□□□□ -1.64
USP28-215ENST00000545608 NDUFA12Q9UI09 145 aa4.83□□□□□ -1.64
USP28-215ENST00000545608 MUC17Q685J3 4493 aa4.82□□□□□ -1.64
USP28-215ENST00000545608 S100A7L2Q5SY68 101 aa4.82□□□□□ -1.64
USP28-215ENST00000545608 SPAG11AQ6PDA7 123 aa4.82□□□□□ -1.64
USP28-215ENST00000545608 SMCR5Q8TEV8 140 aa4.81□□□□□ -1.64
USP28-215ENST00000545608 KRTAP9-4Q9BYQ2 154 aa4.81□□□□□ -1.64
USP28-215ENST00000545608 FAT4Q6V0I7 4981 aa4.8□□□□□ -1.64
USP28-215ENST00000545608 KRTAP4-16G5E9R7 235 aaPredicted RBP4.8□□□□□ -1.64
USP28-215ENST00000545608 NCR3O14931 201 aa4.8□□□□□ -1.64
USP28-215ENST00000545608 DNAL4O96015 105 aa4.8□□□□□ -1.64
USP28-215ENST00000545608 SPRR1AP35321 89 aa4.8□□□□□ -1.64
USP28-215ENST00000545608 MIR7-3HGQ8N6C7 128 aa4.8□□□□□ -1.64
USP28-215ENST00000545608 KCNQ1DNQ9H478 68 aa4.8□□□□□ -1.64
USP28-215ENST00000545608 TRAV13-2A0A0B4J235 113 aa4.79□□□□□ -1.64
USP28-215ENST00000545608 BAALC-AS2P0C853 105 aa4.79□□□□□ -1.64
USP28-215ENST00000545608 LINC00337Q8N6G1 96 aa4.79□□□□□ -1.64
USP28-215ENST00000545608 Q8NBF4 154 aa4.79□□□□□ -1.64
USP28-215ENST00000545608 LITAFQ99732 161 aa4.79□□□□□ -1.64
USP28-215ENST00000545608 KRTAP9-3Q9BYQ3 159 aa4.79□□□□□ -1.64
USP28-215ENST00000545608 ZNF706Q9Y5V0 76 aaPredicted RBP4.79□□□□□ -1.64
USP28-215ENST00000545608 TRBV10-3A0A0K0K1G6 114 aa4.78□□□□□ -1.64
USP28-215ENST00000545608 KRTAP13-3Q3SY46 172 aa4.78□□□□□ -1.64
USP28-215ENST00000545608 ATP5EP2Q5VTU8 51 aa4.78□□□□□ -1.64
USP28-215ENST00000545608 FP248Q71RG6 208 aaPredicted RBP4.78□□□□□ -1.64
USP28-215ENST00000545608 SERP2Q8N6R1 65 aa4.78□□□□□ -1.64
USP28-215ENST00000545608 CLEC2BQ92478 149 aa4.78□□□□□ -1.64
USP28-215ENST00000545608 ETDCA0A1B0GVM5 59 aa4.77□□□□□ -1.65
USP28-215ENST00000545608 H0YGX0 51 aa4.77□□□□□ -1.65
USP28-215ENST00000545608 Q6JHZ5 121 aa4.77□□□□□ -1.65
USP28-215ENST00000545608 KRTAP9-9Q9BYP9 154 aa4.77□□□□□ -1.65
USP28-215ENST00000545608 ERC2-IT1O76042 136 aa4.76□□□□□ -1.65
USP28-215ENST00000545608 NDUFC2O95298 119 aa4.76□□□□□ -1.65
USP28-215ENST00000545608 HIST1H4AP62805 103 aaKnown RBP4.76□□□□□ -1.65
USP28-215ENST00000545608 LINC00483Q53H64 154 aa4.76□□□□□ -1.65
USP28-215ENST00000545608 LINC00308Q8TCZ7 52 aa4.76□□□□□ -1.65
USP28-215ENST00000545608 SPINK1P00995 79 aa4.75□□□□□ -1.65
USP28-215ENST00000545608 ASB16-AS1Q495Z4 193 aa4.75□□□□□ -1.65
USP28-215ENST00000545608 ADAMTSL4-AS1Q5T5F5 129 aa4.75□□□□□ -1.65
USP28-215ENST00000545608 KRTAP4-1Q9BYQ7 146 aa4.75□□□□□ -1.65
USP28-215ENST00000545608 IGLV9-49A0A0B4J1Y8 123 aa4.74□□□□□ -1.65
USP28-215ENST00000545608 hADV29S1A0JD25 119 aa4.73□□□□□ -1.65
USP28-215ENST00000545608 MOBPQ13875 183 aa4.73□□□□□ -1.65
USP28-215ENST00000545608 SSBP3-AS1Q7Z2R9 100 aa4.73□□□□□ -1.65
USP28-215ENST00000545608 Q9BRP9 147 aa4.73□□□□□ -1.65
USP28-215ENST00000545608 JMJD7-PLA2G4BH0Y9G9 81 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms