RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 APOC4-APOC2K7ER74 178 aa0.4□□□□□ -2.35
CD44-234ENST00000531873 MT2AP02795 61 aa0.4□□□□□ -2.35
CD44-234ENST00000531873 ACYP2P14621 99 aa0.4□□□□□ -2.35
CD44-234ENST00000531873 Q6ZRX8 168 aa0.4□□□□□ -2.35
CD44-234ENST00000531873 PRR15LQ9BU68 103 aa0.4□□□□□ -2.35
CD44-234ENST00000531873 M0R1W7 72 aa0.39□□□□□ -2.35
CD44-234ENST00000531873 MT1FP04733 61 aa0.39□□□□□ -2.35
CD44-234ENST00000531873 KRTAP19-2Q3LHN2 52 aa0.39□□□□□ -2.35
CD44-234ENST00000531873 Q56UQ5 140 aa0.39□□□□□ -2.35
CD44-234ENST00000531873 C12orf73Q69YU5 71 aa0.39□□□□□ -2.35
CD44-234ENST00000531873 DEFB106AQ8N104 65 aa0.39□□□□□ -2.35
CD44-234ENST00000531873 PP6455Q8WZ26 134 aa0.39□□□□□ -2.35
CD44-234ENST00000531873 SCN3BQ9NY72 215 aa0.39□□□□□ -2.35
CD44-234ENST00000531873 TRAV13-2A0A0B4J235 113 aa0.38□□□□□ -2.35
CD44-234ENST00000531873 TMEM14DPA8MWL7 114 aa0.38□□□□□ -2.35
CD44-234ENST00000531873 DEFB114Q30KQ6 69 aa0.38□□□□□ -2.35
CD44-234ENST00000531873 TTTY10Q9BZA0 68 aa0.38□□□□□ -2.35
CD44-234ENST00000531873 UBE2D4Q9Y2X8 147 aa0.38□□□□□ -2.35
CD44-234ENST00000531873 C20orf202A1L168 122 aa0.37□□□□□ -2.35
CD44-234ENST00000531873 LINC00587B1AMM8 73 aa0.37□□□□□ -2.35
CD44-234ENST00000531873 G3V318 75 aa0.37□□□□□ -2.35
CD44-234ENST00000531873 GYPAP02724 150 aa0.37□□□□□ -2.35
CD44-234ENST00000531873 AKAIN1P0CW23 69 aa0.37□□□□□ -2.35
CD44-234ENST00000531873 MINOS1Q5TGZ0 78 aa0.37□□□□□ -2.35
CD44-234ENST00000531873 RPS27LQ71UM5 84 aaKnown RBP0.37□□□□□ -2.35
CD44-234ENST00000531873 ZNF720Q7Z2F6 126 aa0.37□□□□□ -2.35
CD44-234ENST00000531873 TCHHQ07283 1943 aa0.36□□□□□ -2.35
CD44-234ENST00000531873 FXYD6-FXYD2A0A087WZ82 144 aa0.36□□□□□ -2.35
CD44-234ENST00000531873 TRAV1-2A0A0B4J238 106 aa0.36□□□□□ -2.35
CD44-234ENST00000531873 MIF4GDA9UHW6 222 aaKnown RBP0.36□□□□□ -2.35
CD44-234ENST00000531873 APOC2P02655 101 aa0.36□□□□□ -2.35
CD44-234ENST00000531873 NMBP08949 121 aa0.36□□□□□ -2.35
CD44-234ENST00000531873 DEFB130BP0DP73 79 aa0.36□□□□□ -2.35
CD44-234ENST00000531873 DEFB130AP0DP74 79 aa0.36□□□□□ -2.35
CD44-234ENST00000531873 TPPP2P59282 170 aa0.36□□□□□ -2.35
CD44-234ENST00000531873 KRTAP20-2Q3LI61 65 aa0.36□□□□□ -2.35
CD44-234ENST00000531873 C10orf128Q5T292 105 aa0.36□□□□□ -2.35
CD44-234ENST00000531873 Q5VV11 94 aa0.36□□□□□ -2.35
CD44-234ENST00000531873 KAAG1Q9UBP8 84 aa0.36□□□□□ -2.35
CD44-234ENST00000531873 A0A0D9SFI3 127 aa0.35□□□□□ -2.35
CD44-234ENST00000531873 OOSP1A8MZH6 123 aa0.35□□□□□ -2.35
CD44-234ENST00000531873 CATR1Q13166 79 aa0.35□□□□□ -2.35
CD44-234ENST00000531873 MYOZ3Q8TDC0 251 aa0.35□□□□□ -2.35
CD44-234ENST00000531873 PPP3R2Q96LZ3 170 aa0.35□□□□□ -2.35
CD44-234ENST00000531873 C2orf88Q9BSF0 95 aa0.35□□□□□ -2.35
CD44-234ENST00000531873 SPANXDQ9BXN6 97 aa0.35□□□□□ -2.35
CD44-234ENST00000531873 ANKRD36A6QL64 1941 aa0.34□□□□□ -2.35
CD44-234ENST00000531873 FLGP20930 4061 aaPredicted RBP0.34□□□□□ -2.35
CD44-234ENST00000531873 PIGBOS1A0A0B4J2F0 54 aa0.34□□□□□ -2.36
CD44-234ENST00000531873 PPP1R17O96001 155 aa0.34□□□□□ -2.36
CD44-234ENST00000531873 APELAP0DMC3 54 aa0.34□□□□□ -2.36
CD44-234ENST00000531873 SNRPFP62306 86 aaKnown RBP0.34□□□□□ -2.36
CD44-234ENST00000531873 BAGE3Q86Y29 109 aa0.34□□□□□ -2.36
CD44-234ENST00000531873 TTC9CQ8N5M4 171 aa0.34□□□□□ -2.36
CD44-234ENST00000531873 AQP10Q96PS8 301 aa0.34□□□□□ -2.36
CD44-234ENST00000531873 SCP2D1Q9UJQ7 156 aa0.34□□□□□ -2.36
CD44-234ENST00000531873 H3BNG1 76 aa0.33□□□□□ -2.36
CD44-234ENST00000531873 CORTO00230 105 aa0.33□□□□□ -2.36
CD44-234ENST00000531873 GCHFRP30047 84 aa0.33□□□□□ -2.36
CD44-234ENST00000531873 UBE2D3P61077 147 aa0.33□□□□□ -2.36
CD44-234ENST00000531873 PLGLAQ15195 96 aa0.33□□□□□ -2.36
CD44-234ENST00000531873 USMG5Q96IX5 58 aa0.33□□□□□ -2.36
CD44-234ENST00000531873 LINC00474Q9P2X8 69 aa0.33□□□□□ -2.36
CD44-234ENST00000531873 A0A096LPF7 62 aa0.32□□□□□ -2.36
CD44-234ENST00000531873 NDUFA4O00483 81 aa0.32□□□□□ -2.36
CD44-234ENST00000531873 WFDC2Q14508 124 aa0.32□□□□□ -2.36
CD44-234ENST00000531873 LINC01556Q5JQF7 62 aa0.32□□□□□ -2.36
CD44-234ENST00000531873 MRPL54Q6P161 138 aaKnown RBP0.32□□□□□ -2.36
CD44-234ENST00000531873 C5orf38Q86SI9 138 aa0.32□□□□□ -2.36
CD44-234ENST00000531873 C8orf59Q8N0T1 100 aaPredicted RBP0.32□□□□□ -2.36
CD44-234ENST00000531873 SYNE1Q8NF91 8797 aaKnown RBP0.31□□□□□ -2.36
CD44-234ENST00000531873 F6UZH7 168 aa0.31□□□□□ -2.36
CD44-234ENST00000531873 H3BUA1 57 aa0.31□□□□□ -2.36
CD44-234ENST00000531873 M0R135 149 aa0.31□□□□□ -2.36
CD44-234ENST00000531873 SNAPC5O75971 98 aa0.31□□□□□ -2.36
CD44-234ENST00000531873 IFNGP01579 166 aa0.31□□□□□ -2.36
CD44-234ENST00000531873 DEFB131AP59861 70 aa0.31□□□□□ -2.36
CD44-234ENST00000531873 SPAG11BQ08648 103 aa0.31□□□□□ -2.36
CD44-234ENST00000531873 SPAG11AQ6PDA7 123 aa0.31□□□□□ -2.36
CD44-234ENST00000531873 WFDC10BQ8IUB3 73 aa0.31□□□□□ -2.36
CD44-234ENST00000531873 CYP4F30PQ9H0H9 118 aa0.31□□□□□ -2.36
CD44-234ENST00000531873 LENEPQ9Y5L5 61 aa0.31□□□□□ -2.36
CD44-234ENST00000531873 R4GMQ9 66 aa0.31□□□□□ -2.36
CD44-234ENST00000531873 TRBV7-3A0A075B6L6 115 aa0.3□□□□□ -2.36
CD44-234ENST00000531873 IQCF6A8MYZ5 107 aa0.3□□□□□ -2.36
CD44-234ENST00000531873 SMIM6P0DI80 62 aa0.3□□□□□ -2.36
CD44-234ENST00000531873 HTN1P15515 57 aa0.3□□□□□ -2.36
CD44-234ENST00000531873 C9orf153Q5TBE3 101 aa0.3□□□□□ -2.36
CD44-234ENST00000531873 CFAP126Q5VTH2 177 aa0.3□□□□□ -2.36
CD44-234ENST00000531873 SSBP3-AS1Q7Z2R9 100 aa0.3□□□□□ -2.36
CD44-234ENST00000531873 COMMD6Q7Z4G1 85 aa0.3□□□□□ -2.36
CD44-234ENST00000531873 GAFA1Q96PS6 74 aa0.3□□□□□ -2.36
CD44-234ENST00000531873 RABAC1Q9UI14 185 aa0.3□□□□□ -2.36
CD44-234ENST00000531873 IER3IP1Q9Y5U9 82 aa0.3□□□□□ -2.36
CD44-234ENST00000531873 ZNF815PA8K554 130 aa0.29□□□□□ -2.36
CD44-234ENST00000531873 CCL22O00626 93 aa0.29□□□□□ -2.36
CD44-234ENST00000531873 SSSCA1O60232 199 aa0.29□□□□□ -2.36
CD44-234ENST00000531873 MT1BP07438 61 aa0.29□□□□□ -2.36
CD44-234ENST00000531873 RPS29P62273 56 aaKnown RBP0.29□□□□□ -2.36
CD44-234ENST00000531873 COX6A2Q02221 97 aa0.29□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms