RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 FASNP49327 2511 aaKnown RBP4.66□□□□□ -1.66
LIMCH1-207ENST00000508466 IGKV2D-24A0A075B6R9 120 aa4.65□□□□□ -1.66
LIMCH1-207ENST00000508466 CYP4F30PQ9H0H9 118 aa4.65□□□□□ -1.67
LIMCH1-207ENST00000508466 X6R8D5 127 aa4.64□□□□□ -1.67
LIMCH1-207ENST00000508466 C7orf65Q6ZTY9 151 aa4.64□□□□□ -1.67
LIMCH1-207ENST00000508466 Q8NBF4 154 aa4.64□□□□□ -1.67
LIMCH1-207ENST00000508466 LIMD2Q9BT23 127 aa4.64□□□□□ -1.67
LIMCH1-207ENST00000508466 LYSTQ99698 3801 aa4.64□□□□□ -1.67
LIMCH1-207ENST00000508466 H0Y9J4 135 aa4.64□□□□□ -1.67
LIMCH1-207ENST00000508466 PRR26Q8N8Z3 221 aa4.64□□□□□ -1.67
LIMCH1-207ENST00000508466 LCE6AA0A183 80 aa4.63□□□□□ -1.67
LIMCH1-207ENST00000508466 PRLHP81277 87 aa4.63□□□□□ -1.67
LIMCH1-207ENST00000508466 Q8NAQ8 132 aa4.63□□□□□ -1.67
LIMCH1-207ENST00000508466 LINC00476Q8WZB0 136 aa4.63□□□□□ -1.67
LIMCH1-207ENST00000508466 IGLV5-48A0A075B6I7 105 aa4.62□□□□□ -1.67
LIMCH1-207ENST00000508466 LOC101927531A0A1B0GV80 90 aa4.62□□□□□ -1.67
LIMCH1-207ENST00000508466 CASC2Q6XLA1 102 aa4.62□□□□□ -1.67
LIMCH1-207ENST00000508466 NDUFS5O43920 106 aa4.61□□□□□ -1.67
LIMCH1-207ENST00000508466 LYRM9A8MSI8 78 aa4.61□□□□□ -1.67
LIMCH1-207ENST00000508466 CASC10Q5T4H9 136 aa4.61□□□□□ -1.67
LIMCH1-207ENST00000508466 PHF5AQ7RTV0 110 aaKnown RBP4.61□□□□□ -1.67
LIMCH1-207ENST00000508466 ANK3Q12955 4377 aaKnown RBP4.6□□□□□ -1.67
LIMCH1-207ENST00000508466 LELP1Q5T871 98 aa4.6□□□□□ -1.67
LIMCH1-207ENST00000508466 IGFL1Q6UW32 110 aa4.6□□□□□ -1.67
LIMCH1-207ENST00000508466 C15orf56Q8N910 161 aa4.6□□□□□ -1.67
LIMCH1-207ENST00000508466 CDC42SE1Q9NRR8 79 aa4.6□□□□□ -1.67
LIMCH1-207ENST00000508466 NDUFB1O75438 58 aa4.6□□□□□ -1.67
LIMCH1-207ENST00000508466 Q75L30 129 aa4.6□□□□□ -1.67
LIMCH1-207ENST00000508466 IGKV2-24A0A0C4DH68 120 aa4.59□□□□□ -1.67
LIMCH1-207ENST00000508466 IGLV1-50A0A075B6I6 118 aa4.59□□□□□ -1.67
LIMCH1-207ENST00000508466 Q6ZRX8 168 aa4.59□□□□□ -1.67
LIMCH1-207ENST00000508466 K7EIL1 84 aa4.59□□□□□ -1.68
LIMCH1-207ENST00000508466 LCE2CQ5TA81 110 aa4.59□□□□□ -1.68
LIMCH1-207ENST00000508466 H3BQ85 93 aa4.58□□□□□ -1.68
LIMCH1-207ENST00000508466 DNAH10Q8IVF4 4471 aa4.58□□□□□ -1.68
LIMCH1-207ENST00000508466 IGLV8-61A0A075B6I0 122 aa4.57□□□□□ -1.68
LIMCH1-207ENST00000508466 CNBPP62633 177 aaKnown RBP4.57□□□□□ -1.68
LIMCH1-207ENST00000508466 EGFEM1PQ0D2K5 195 aa4.57□□□□□ -1.68
LIMCH1-207ENST00000508466 KCNQ1DNQ9H478 68 aa4.57□□□□□ -1.68
LIMCH1-207ENST00000508466 ANK2Q01484 3957 aa4.57□□□□□ -1.68
LIMCH1-207ENST00000508466 STAB1Q9NY15 2570 aa4.57□□□□□ -1.68
LIMCH1-207ENST00000508466 KRTAP7-1Q8IUC3 87 aa4.56□□□□□ -1.68
LIMCH1-207ENST00000508466 PRR34Q9NV39 138 aa4.56□□□□□ -1.68
LIMCH1-207ENST00000508466 DMBT1Q9UGM3 2413 aaPredicted RBP4.56□□□□□ -1.68
LIMCH1-207ENST00000508466 TNP2Q05952 138 aa4.56□□□□□ -1.68
LIMCH1-207ENST00000508466 RETNLBQ9BQ08 111 aa4.56□□□□□ -1.68
LIMCH1-207ENST00000508466 GVQW2A0A096LPI5 108 aaPredicted RBP4.55□□□□□ -1.68
LIMCH1-207ENST00000508466 SPRR4Q96PI1 79 aa4.55□□□□□ -1.68
LIMCH1-207ENST00000508466 LINC01554Q52M75 96 aa4.54□□□□□ -1.68
LIMCH1-207ENST00000508466 TENM4Q6N022 2769 aa4.54□□□□□ -1.68
LIMCH1-207ENST00000508466 HRES1P13985 223 aa4.54□□□□□ -1.68
LIMCH1-207ENST00000508466 C9orf163Q8N9P6 203 aa4.54□□□□□ -1.68
LIMCH1-207ENST00000508466 KRTAP29-1A8MX34 341 aaPredicted RBP4.53□□□□□ -1.68
LIMCH1-207ENST00000508466 DHRS4-AS1Q9P1J3 65 aa4.53□□□□□ -1.68
LIMCH1-207ENST00000508466 CSAG1Q6PB30 78 aa4.53□□□□□ -1.68
LIMCH1-207ENST00000508466 MGAM2Q2M2H8 2515 aa4.52□□□□□ -1.69
LIMCH1-207ENST00000508466 SMR3AQ99954 134 aa4.52□□□□□ -1.69
LIMCH1-207ENST00000508466 KRTAP26-1Q6PEX3 210 aa4.51□□□□□ -1.69
LIMCH1-207ENST00000508466 IGHV6-1A0A0B4J1U7 121 aa4.51□□□□□ -1.69
LIMCH1-207ENST00000508466 SPART-AS1P0CW21 52 aa4.51□□□□□ -1.69
LIMCH1-207ENST00000508466 KRTAP10-3P60369 221 aa4.51□□□□□ -1.69
LIMCH1-207ENST00000508466 CRIPTQ9P021 101 aa4.51□□□□□ -1.69
LIMCH1-207ENST00000508466 IGLV7-46A0A075B6I9 117 aa4.5□□□□□ -1.69
LIMCH1-207ENST00000508466 A0A087X002 238 aa4.5□□□□□ -1.69
LIMCH1-207ENST00000508466 NOTCH2NLQ7Z3S9 236 aa4.5□□□□□ -1.69
LIMCH1-207ENST00000508466 KRTAP4-16G5E9R7 235 aaPredicted RBP4.5□□□□□ -1.69
LIMCH1-207ENST00000508466 FAM229AH3BQW9 127 aa4.49□□□□□ -1.69
LIMCH1-207ENST00000508466 SPANXA2-OT1Q8N9U9 137 aa4.49□□□□□ -1.69
LIMCH1-207ENST00000508466 LINC01558Q9Y6Z2 57 aa4.49□□□□□ -1.69
LIMCH1-207ENST00000508466 IGLV9-49A0A0B4J1Y8 123 aa4.49□□□□□ -1.69
LIMCH1-207ENST00000508466 CHTF8P0CG12 524 aa4.49□□□□□ -1.69
LIMCH1-207ENST00000508466 KRTAP11-1Q8IUC1 163 aa4.49□□□□□ -1.69
LIMCH1-207ENST00000508466 IGLV5-37A0A075B6J1 123 aa4.48□□□□□ -1.69
LIMCH1-207ENST00000508466 REG3GQ6UW15 175 aa4.48□□□□□ -1.69
LIMCH1-207ENST00000508466 Q6ZR54 194 aa4.48□□□□□ -1.69
LIMCH1-207ENST00000508466 ANAPC11Q9NYG5 84 aa4.48□□□□□ -1.69
LIMCH1-207ENST00000508466 CMC4P56277 68 aaPredicted RBP4.47□□□□□ -1.69
LIMCH1-207ENST00000508466 SPINK6Q6UWN8 80 aa4.47□□□□□ -1.69
LIMCH1-207ENST00000508466 ZNF706Q9Y5V0 76 aaPredicted RBP4.47□□□□□ -1.69
LIMCH1-207ENST00000508466 MMP24-AS1A0A0U1RRL7 71 aa4.46□□□□□ -1.7
LIMCH1-207ENST00000508466 A8MWP4 228 aa4.46□□□□□ -1.7
LIMCH1-207ENST00000508466 STAB2Q8WWQ8 2551 aa4.45□□□□□ -1.7
LIMCH1-207ENST00000508466 LINC00472Q9H8W2 130 aa4.44□□□□□ -1.7
LIMCH1-207ENST00000508466 TGP01266 2768 aa4.43□□□□□ -1.7
LIMCH1-207ENST00000508466 SPRR1AP35321 89 aa4.43□□□□□ -1.7
LIMCH1-207ENST00000508466 Q5W150 140 aa4.43□□□□□ -1.7
LIMCH1-207ENST00000508466 KMT2BQ9UMN6 2715 aaPredicted RBP4.43□□□□□ -1.7
LIMCH1-207ENST00000508466 FRAS1Q86XX4 4008 aa4.42□□□□□ -1.7
LIMCH1-207ENST00000508466 PLAC8Q9NZF1 115 aa4.42□□□□□ -1.7
LIMCH1-207ENST00000508466 MEGF8Q7Z7M0 2845 aa4.42□□□□□ -1.7
LIMCH1-207ENST00000508466 RTL8CO15255 209 aa4.42□□□□□ -1.7
LIMCH1-207ENST00000508466 DEFB113Q30KQ7 82 aa4.42□□□□□ -1.7
LIMCH1-207ENST00000508466 LCE2AQ5TA79 106 aaPredicted RBP4.42□□□□□ -1.7
LIMCH1-207ENST00000508466 C1orf134Q5TEV5 83 aa4.42□□□□□ -1.7
LIMCH1-207ENST00000508466 SPINK1P00995 79 aa4.42□□□□□ -1.7
LIMCH1-207ENST00000508466 A0A1B0GU69 56 aa4.41□□□□□ -1.7
LIMCH1-207ENST00000508466 PLA2G1BP04054 148 aaKnown RBP4.4□□□□□ -1.71
LIMCH1-207ENST00000508466 DEFB131BA0A096LNP1 70 aa4.39□□□□□ -1.71
LIMCH1-207ENST00000508466 A0A1B0GW54 56 aa4.39□□□□□ -1.71
LIMCH1-207ENST00000508466 H3BPC8 53 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 162.3 ms