RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 A0A0G2JQZ4 141 aa10.63□□□□□ -0.71
CCDC88B-209ENST00000494080 A0A1W2PNN7 141 aa10.63□□□□□ -0.71
CCDC88B-209ENST00000494080 EPM2AB3EWF7 344 aa10.63□□□□□ -0.71
CCDC88B-209ENST00000494080 SPINK1P00995 79 aa10.62□□□□□ -0.71
CCDC88B-209ENST00000494080 FBN2P35556 2912 aa10.61□□□□□ -0.71
CCDC88B-209ENST00000494080 PRR15Q8IV56 129 aa10.61□□□□□ -0.71
CCDC88B-209ENST00000494080 A0A1W2PNM2 257 aa10.61□□□□□ -0.71
CCDC88B-209ENST00000494080 DCHS2Q6V1P9 2916 aa10.61□□□□□ -0.71
CCDC88B-209ENST00000494080 Q8NDZ9 215 aa10.59□□□□□ -0.71
CCDC88B-209ENST00000494080 COA5Q86WW8 74 aa10.59□□□□□ -0.71
CCDC88B-209ENST00000494080 IGLV1-50A0A075B6I6 118 aa10.58□□□□□ -0.72
CCDC88B-209ENST00000494080 RTL8CO15255 209 aa10.58□□□□□ -0.72
CCDC88B-209ENST00000494080 MOBPQ13875 183 aa10.58□□□□□ -0.72
CCDC88B-209ENST00000494080 KTN1-AS1Q86SY8 53 aa10.58□□□□□ -0.72
CCDC88B-209ENST00000494080 CYP4F30PQ9H0H9 118 aa10.57□□□□□ -0.72
CCDC88B-209ENST00000494080 TP53AIP1Q9HCN2 124 aa10.57□□□□□ -0.72
CCDC88B-209ENST00000494080 K7ERS5 55 aa10.55□□□□□ -0.72
CCDC88B-209ENST00000494080 IGFL1Q6UW32 110 aa10.55□□□□□ -0.72
CCDC88B-209ENST00000494080 ZFHX4Q86UP3 3567 aa10.54□□□□□ -0.72
CCDC88B-209ENST00000494080 ATP11AUNQ6ZP68 121 aa10.53□□□□□ -0.72
CCDC88B-209ENST00000494080 NIPBLQ6KC79 2804 aaeCLIP10.52□□□□□ -0.73
CCDC88B-209ENST00000494080 A8MWP4 228 aa10.51□□□□□ -0.73
CCDC88B-209ENST00000494080 LOC101927531A0A1B0GV80 90 aa10.51□□□□□ -0.73
CCDC88B-209ENST00000494080 SPACA4Q8TDM5 124 aa10.51□□□□□ -0.73
CCDC88B-209ENST00000494080 Q1T7F1 81 aa10.51□□□□□ -0.73
CCDC88B-209ENST00000494080 IGLV5-48A0A075B6I7 105 aa10.5□□□□□ -0.73
CCDC88B-209ENST00000494080 IGKV2D-30A0A075B6S6 120 aa10.5□□□□□ -0.73
CCDC88B-209ENST00000494080 IGKV2-30P06310 120 aa10.5□□□□□ -0.73
CCDC88B-209ENST00000494080 A0A1B0GU69 56 aa10.49□□□□□ -0.73
CCDC88B-209ENST00000494080 STAB2Q8WWQ8 2551 aa10.48□□□□□ -0.73
CCDC88B-209ENST00000494080 FLG2Q5D862 2391 aaPredicted RBP10.47□□□□□ -0.73
CCDC88B-209ENST00000494080 TLX1NBP0CAT3 122 aa10.45□□□□□ -0.74
CCDC88B-209ENST00000494080 RBM12B-AS1Q9P1G2 102 aa10.45□□□□□ -0.74
CCDC88B-209ENST00000494080 DSCR10P59022 87 aa10.45□□□□□ -0.74
CCDC88B-209ENST00000494080 ACYP2P14621 99 aa10.45□□□□□ -0.74
CCDC88B-209ENST00000494080 C9orf163Q8N9P6 203 aa10.45□□□□□ -0.74
CCDC88B-209ENST00000494080 APLNQ9ULZ1 77 aa10.44□□□□□ -0.74
CCDC88B-209ENST00000494080 C7orf65Q6ZTY9 151 aa10.43□□□□□ -0.74
CCDC88B-209ENST00000494080 WWC2-AS2Q96NR7 200 aa10.42□□□□□ -0.74
CCDC88B-209ENST00000494080 KMT2BQ9UMN6 2715 aaPredicted RBP10.42□□□□□ -0.74
CCDC88B-209ENST00000494080 MXRA5Q9NR99 2828 aa10.41□□□□□ -0.74
CCDC88B-209ENST00000494080 A0A087WTM6 91 aa10.4□□□□□ -0.74
CCDC88B-209ENST00000494080 SPANXA2-OT1Q8N9U9 137 aa10.39□□□□□ -0.75
CCDC88B-209ENST00000494080 LCA10Q71F78 164 aa10.38□□□□□ -0.75
CCDC88B-209ENST00000494080 PLA2G2DQ9UNK4 145 aa10.38□□□□□ -0.75
CCDC88B-209ENST00000494080 C8orf87E5RJ46 101 aa10.37□□□□□ -0.75
CCDC88B-209ENST00000494080 ANAPC11Q9NYG5 84 aa10.35□□□□□ -0.75
CCDC88B-209ENST00000494080 SPRR4Q96PI1 79 aa10.34□□□□□ -0.75
CCDC88B-209ENST00000494080 IGLV8-61A0A075B6I0 122 aa10.34□□□□□ -0.75
CCDC88B-209ENST00000494080 CNBPP62633 177 aaKnown RBP10.33□□□□□ -0.76
CCDC88B-209ENST00000494080 MRPL34Q9BQ48 92 aaKnown RBP10.33□□□□□ -0.76
CCDC88B-209ENST00000494080 C8orf17Q9NRJ1 99 aa10.32□□□□□ -0.76
CCDC88B-209ENST00000494080 CDC42SE1Q9NRR8 79 aa10.31□□□□□ -0.76
CCDC88B-209ENST00000494080 Q8N9P0 234 aaPredicted RBP10.3□□□□□ -0.76
CCDC88B-209ENST00000494080 Q5VV11 94 aa10.28□□□□□ -0.76
CCDC88B-209ENST00000494080 ZNF861PO60384 105 aa10.27□□□□□ -0.76
CCDC88B-209ENST00000494080 DMBT1Q9UGM3 2413 aaPredicted RBP10.27□□□□□ -0.77
CCDC88B-209ENST00000494080 PSORS1C2Q9UIG4 136 aa10.27□□□□□ -0.77
CCDC88B-209ENST00000494080 TYMSOSQ8TAI1 123 aa10.26□□□□□ -0.77
CCDC88B-209ENST00000494080 TENM4Q6N022 2769 aa10.25□□□□□ -0.77
CCDC88B-209ENST00000494080 IGLV5-37A0A075B6J1 123 aa10.24□□□□□ -0.77
CCDC88B-209ENST00000494080 PRR26Q8N8Z3 221 aa10.23□□□□□ -0.77
CCDC88B-209ENST00000494080 PLA2G1BP04054 148 aaKnown RBP10.23□□□□□ -0.77
CCDC88B-209ENST00000494080 A0A1B0GVX0 72 aa10.22□□□□□ -0.77
CCDC88B-209ENST00000494080 UQCR11O14957 56 aa10.22□□□□□ -0.77
CCDC88B-209ENST00000494080 LINC00313P59037 77 aa10.21□□□□□ -0.77
CCDC88B-209ENST00000494080 Q75L30 129 aa10.2□□□□□ -0.78
CCDC88B-209ENST00000494080 KRTAP1-5Q9BYS1 174 aa10.2□□□□□ -0.78
CCDC88B-209ENST00000494080 KRTAP26-1Q6PEX3 210 aa10.19□□□□□ -0.78
CCDC88B-209ENST00000494080 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.19□□□□□ -0.78
CCDC88B-209ENST00000494080 SMG1Q96Q15 3661 aaKnown RBP10.19□□□□□ -0.78
CCDC88B-209ENST00000494080 IGLV7-46A0A075B6I9 117 aa10.18□□□□□ -0.78
CCDC88B-209ENST00000494080 TNP2Q05952 138 aa10.17□□□□□ -0.78
CCDC88B-209ENST00000494080 MIR22HGQ0VDD5 57 aa10.17□□□□□ -0.78
CCDC88B-209ENST00000494080 PRAC1Q96KF2 57 aa10.17□□□□□ -0.78
CCDC88B-209ENST00000494080 SMR3BP02814 79 aaPredicted RBP10.17□□□□□ -0.78
CCDC88B-209ENST00000494080 H3BS24 57 aa10.16□□□□□ -0.78
CCDC88B-209ENST00000494080 Q96NJ1 140 aa10.15□□□□□ -0.78
CCDC88B-209ENST00000494080 CELSR1Q9NYQ6 3014 aa10.15□□□□□ -0.78
CCDC88B-209ENST00000494080 FAM229AH3BQW9 127 aa10.15□□□□□ -0.79
CCDC88B-209ENST00000494080 IGLV7-43P04211 117 aa10.15□□□□□ -0.79
CCDC88B-209ENST00000494080 SPRR1AP35321 89 aa10.13□□□□□ -0.79
CCDC88B-209ENST00000494080 CSMD1Q96PZ7 3565 aa10.12□□□□□ -0.79
CCDC88B-209ENST00000494080 SSBP3-AS1Q7Z2R9 100 aa10.11□□□□□ -0.79
CCDC88B-209ENST00000494080 A8MU10 97 aa10.09□□□□□ -0.79
CCDC88B-209ENST00000494080 LINC01558Q9Y6Z2 57 aa10.09□□□□□ -0.79
CCDC88B-209ENST00000494080 LINC01554Q52M75 96 aa10.07□□□□□ -0.8
CCDC88B-209ENST00000494080 MMP24-AS1A0A0U1RRL7 71 aa10.07□□□□□ -0.8
CCDC88B-209ENST00000494080 ZCCHC13Q8WW36 166 aaKnown RBP10.07□□□□□ -0.8
CCDC88B-209ENST00000494080 SPINK7P58062 85 aa10.05□□□□□ -0.8
CCDC88B-209ENST00000494080 HRES1P13985 223 aa10.01□□□□□ -0.81
CCDC88B-209ENST00000494080 SVEP1Q4LDE5 3571 aa10.01□□□□□ -0.81
CCDC88B-209ENST00000494080 LINC00472Q9H8W2 130 aa10□□□□□ -0.81
CCDC88B-209ENST00000494080 C9orf92A6NGG3 77 aa9.99□□□□□ -0.81
CCDC88B-209ENST00000494080 LINC00304Q8N9R0 145 aa9.98□□□□□ -0.81
CCDC88B-209ENST00000494080 TENM1Q9UKZ4 2725 aa9.95□□□□□ -0.82
CCDC88B-209ENST00000494080 KRTAP4-16G5E9R7 235 aaPredicted RBP9.94□□□□□ -0.82
CCDC88B-209ENST00000494080 CUBNO60494 3623 aa9.92□□□□□ -0.82
CCDC88B-209ENST00000494080 KRTAP29-1A8MX34 341 aaPredicted RBP9.92□□□□□ -0.82
CCDC88B-209ENST00000494080 TENM3Q9P273 2699 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms