RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 IGLV6-57P01721 117 aa7.07□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 RBM12B-AS1Q9P1G2 102 aa7.07□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 ATP11AUNQ6ZP68 121 aa7.06□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 CYP4F30PQ9H0H9 118 aa7.04□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 SERTAD4-AS1Q5TG53 156 aa7.04□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 C15orf56Q8N910 161 aa7.04□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 Q8NDZ9 215 aa7.04□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 C7orf33Q8WU49 177 aa7.04□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 K7EQZ3 153 aa7.04□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 PRR34Q9NV39 138 aa7.03□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 Q8NBF4 154 aa7.03□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 A0A0G2JQZ4 141 aa7.03□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 A0A1W2PNN7 141 aa7.03□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 C7orf65Q6ZTY9 151 aa7.01□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 ST20-AS1Q8NBB2 130 aa7.01□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 C4orf48Q5BLP8 95 aa7.01□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 IGLV9-49A0A0B4J1Y8 123 aa7□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 A0A1B0GW54 56 aa7□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 LOC101927531A0A1B0GV80 90 aa6.99□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 PHF5AQ7RTV0 110 aaKnown RBP6.99□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 NUPR2A6NF83 97 aa6.98□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 LCA10Q71F78 164 aa6.98□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 COA5Q86WW8 74 aa6.98□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 LINC00528Q8N1L1 170 aa6.98□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 H3BNG1 76 aa6.97□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 VPREB1P12018 145 aa6.97□□□□□ -1.29
MSH5-SAPCD1-207ENST00000493662 CSMD3Q7Z407 3707 aa6.96□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 RPL37AP61513 92 aaKnown RBP6.96□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 H3BPC8 53 aa6.95□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 C14orf177Q52M58 125 aa6.95□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 REG3GQ6UW15 175 aa6.94□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 SPINK6Q6UWN8 80 aa6.94□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 NBDYA0A0U1RRE5 68 aa6.93□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 KRTAP1-5Q9BYS1 174 aa6.93□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 Q8N377 158 aa6.93□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 C16orf90A8MZG2 172 aa6.93□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 LINC00476Q8WZB0 136 aa6.93□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 GVQW2A0A096LPI5 108 aaPredicted RBP6.92□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 IGLV5-52A0A0A0MRZ9 124 aa6.92□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 Q9BRP9 147 aa6.92□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 Q5VV11 94 aa6.92□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 A0A1W2PNM2 257 aa6.91□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 Q6ZRX8 168 aa6.91□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 CDC42SE1Q9NRR8 79 aa6.91□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 C8orf87E5RJ46 101 aa6.9□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 C1orf134Q5TEV5 83 aa6.9□□□□□ -1.3
MSH5-SAPCD1-207ENST00000493662 SRRM2Q9UQ35 2752 aaKnown RBP6.9□□□□□ -1.31
MSH5-SAPCD1-207ENST00000493662 Q8N9P0 234 aaPredicted RBP6.9□□□□□ -1.31
MSH5-SAPCD1-207ENST00000493662 H3BS24 57 aa6.89□□□□□ -1.31
MSH5-SAPCD1-207ENST00000493662 IGHV6-1A0A0B4J1U7 121 aa6.88□□□□□ -1.31
MSH5-SAPCD1-207ENST00000493662 ANAPC11Q9NYG5 84 aa6.88□□□□□ -1.31
MSH5-SAPCD1-207ENST00000493662 APLNQ9ULZ1 77 aa6.87□□□□□ -1.31
MSH5-SAPCD1-207ENST00000493662 SPANXA2-OT1Q8N9U9 137 aa6.86□□□□□ -1.31
MSH5-SAPCD1-207ENST00000493662 A0A1B0GU69 56 aa6.85□□□□□ -1.31
MSH5-SAPCD1-207ENST00000493662 DSCR10P59022 87 aa6.85□□□□□ -1.31
MSH5-SAPCD1-207ENST00000493662 KCNQ1DNQ9H478 68 aa6.84□□□□□ -1.31
MSH5-SAPCD1-207ENST00000493662 IGLV5-48A0A075B6I7 105 aa6.84□□□□□ -1.31
MSH5-SAPCD1-207ENST00000493662 RETNLBQ9BQ08 111 aa6.84□□□□□ -1.31
MSH5-SAPCD1-207ENST00000493662 RTL8CO15255 209 aa6.83□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 Q75L30 129 aa6.83□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 CIRBP-AS1Q8TBR5 109 aa6.83□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 TP53AIP1Q9HCN2 124 aa6.83□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 A8MU10 97 aa6.82□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 IGLV1-50A0A075B6I6 118 aa6.81□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 PRAC1Q96KF2 57 aa6.81□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 KRTAP26-1Q6PEX3 210 aa6.81□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 IGFL1Q6UW32 110 aa6.8□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 A8MWP4 228 aa6.79□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 COL7A1Q02388 2944 aa6.79□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 ACYP2P14621 99 aa6.78□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 LINC01554Q52M75 96 aa6.77□□□□□ -1.32
MSH5-SAPCD1-207ENST00000493662 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.77□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 A0A087WTM6 91 aa6.76□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 MOBPQ13875 183 aa6.76□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 TNP2Q05952 138 aa6.76□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 PANO1I0J062 215 aa6.75□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 K7ERS5 55 aa6.75□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 SMR3BP02814 79 aaPredicted RBP6.75□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 LINC00313P59037 77 aa6.75□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 C9orf163Q8N9P6 203 aa6.75□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 DMBT1Q9UGM3 2413 aaPredicted RBP6.74□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 SPRR4Q96PI1 79 aa6.74□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 FLG2Q5D862 2391 aaPredicted RBP6.74□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 IGLV8-61A0A075B6I0 122 aa6.74□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 PRR26Q8N8Z3 221 aa6.74□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 SPINK1P00995 79 aa6.73□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 ZCCHC13Q8WW36 166 aaKnown RBP6.73□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 WWC2-AS2Q96NR7 200 aa6.73□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 SPINK7P58062 85 aa6.72□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 IGLV7-46A0A075B6I9 117 aa6.72□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 LINC01558Q9Y6Z2 57 aa6.72□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 UQCR11O14957 56 aa6.71□□□□□ -1.33
MSH5-SAPCD1-207ENST00000493662 FBN3Q75N90 2809 aa6.7□□□□□ -1.34
MSH5-SAPCD1-207ENST00000493662 ZNF706Q9Y5V0 76 aaPredicted RBP6.7□□□□□ -1.34
MSH5-SAPCD1-207ENST00000493662 MIR22HGQ0VDD5 57 aa6.7□□□□□ -1.34
MSH5-SAPCD1-207ENST00000493662 PSORS1C2Q9UIG4 136 aa6.68□□□□□ -1.34
MSH5-SAPCD1-207ENST00000493662 A6NN06 94 aa6.67□□□□□ -1.34
MSH5-SAPCD1-207ENST00000493662 TLX1NBP0CAT3 122 aa6.67□□□□□ -1.34
MSH5-SAPCD1-207ENST00000493662 KRTAP11-1Q8IUC1 163 aa6.66□□□□□ -1.34
MSH5-SAPCD1-207ENST00000493662 MRPL34Q9BQ48 92 aaKnown RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms