RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 U3KQA8 63 aa0.96□□□□□ -2.26
PTCD3-205ENST00000464541 GVINP1Q7Z2Y8 2422 aa0.96□□□□□ -2.26
PTCD3-205ENST00000464541 TPRP12270 2363 aaKnown RBP0.95□□□□□ -2.26
PTCD3-205ENST00000464541 H3BUA1 57 aa0.95□□□□□ -2.26
PTCD3-205ENST00000464541 BDP1A6H8Y1 2624 aa0.95□□□□□ -2.26
PTCD3-205ENST00000464541 RPS27P42677 84 aaKnown RBP0.94□□□□□ -2.26
PTCD3-205ENST00000464541 WT1-ASQ06250 92 aa0.94□□□□□ -2.26
PTCD3-205ENST00000464541 RPS27LQ71UM5 84 aaKnown RBP0.94□□□□□ -2.26
PTCD3-205ENST00000464541 KRTAP19-3Q7Z4W3 81 aa0.94□□□□□ -2.26
PTCD3-205ENST00000464541 SMR3AQ99954 134 aa0.94□□□□□ -2.26
PTCD3-205ENST00000464541 CELSR2Q9HCU4 2923 aa0.92□□□□□ -2.26
PTCD3-205ENST00000464541 KNL1Q8NG31 2342 aa0.92□□□□□ -2.26
PTCD3-205ENST00000464541 H0YGG7 62 aa0.92□□□□□ -2.26
PTCD3-205ENST00000464541 TOGARAM1Q9Y4F4 1720 aa0.92□□□□□ -2.26
PTCD3-205ENST00000464541 CHD9Q3L8U1 2897 aa0.91□□□□□ -2.26
PTCD3-205ENST00000464541 CDC42BPAQ5VT25 1732 aa0.91□□□□□ -2.26
PTCD3-205ENST00000464541 PDE4DIPQ5VU43 2346 aa0.9□□□□□ -2.26
PTCD3-205ENST00000464541 CSMD3Q7Z407 3707 aa0.9□□□□□ -2.27
PTCD3-205ENST00000464541 PIEZO1Q92508 2521 aa0.89□□□□□ -2.27
PTCD3-205ENST00000464541 DEFB135Q30KP9 77 aa0.89□□□□□ -2.27
PTCD3-205ENST00000464541 SMIM2Q9BVW6 85 aa0.89□□□□□ -2.27
PTCD3-205ENST00000464541 ABCA2Q9BZC7 2435 aa0.89□□□□□ -2.27
PTCD3-205ENST00000464541 M0R2T5 61 aa0.88□□□□□ -2.27
PTCD3-205ENST00000464541 AHNAKQ09666 5890 aaKnown RBP0.88□□□□□ -2.27
PTCD3-205ENST00000464541 KRTAP2-3P0C7H8 128 aa0.87□□□□□ -2.27
PTCD3-205ENST00000464541 PRLHP81277 87 aa0.87□□□□□ -2.27
PTCD3-205ENST00000464541 DEFB106AQ8N104 65 aa0.87□□□□□ -2.27
PTCD3-205ENST00000464541 KRTAP2-4Q9BYR9 128 aa0.87□□□□□ -2.27
PTCD3-205ENST00000464541 KRTAP2-1Q9BYU5 128 aa0.87□□□□□ -2.27
PTCD3-205ENST00000464541 S4R3F8 94 aa0.87□□□□□ -2.27
PTCD3-205ENST00000464541 LMO7Q8WWI1 1683 aa0.86□□□□□ -2.27
PTCD3-205ENST00000464541 FAM208AQ9UK61 1670 aaKnown RBP0.86□□□□□ -2.27
PTCD3-205ENST00000464541 SPTA1P02549 2419 aa0.86□□□□□ -2.27
PTCD3-205ENST00000464541 REV3LO60673 3130 aa0.85□□□□□ -2.27
PTCD3-205ENST00000464541 TFF3Q07654 80 aa0.84□□□□□ -2.27
PTCD3-205ENST00000464541 NOP10Q9NPE3 64 aaKnown RBP0.84□□□□□ -2.27
PTCD3-205ENST00000464541 CSPG4Q6UVK1 2322 aa0.84□□□□□ -2.28
PTCD3-205ENST00000464541 ANK2Q01484 3957 aa0.84□□□□□ -2.28
PTCD3-205ENST00000464541 TENM4Q6N022 2769 aa0.84□□□□□ -2.28
PTCD3-205ENST00000464541 DDX60Q8IY21 1712 aaKnown RBP0.84□□□□□ -2.28
PTCD3-205ENST00000464541 TOP2AP11388 1531 aaKnown RBP0.83□□□□□ -2.28
PTCD3-205ENST00000464541 FRAS1Q86XX4 4008 aa0.83□□□□□ -2.28
PTCD3-205ENST00000464541 WFDC10BQ8IUB3 73 aa0.82□□□□□ -2.28
PTCD3-205ENST00000464541 KAAG1Q9UBP8 84 aa0.82□□□□□ -2.28
PTCD3-205ENST00000464541 APCP25054 2843 aa0.82□□□□□ -2.28
PTCD3-205ENST00000464541 MUC5BQ9HC84 5762 aaPredicted RBP0.81□□□□□ -2.28
PTCD3-205ENST00000464541 ALMS1Q8TCU4 4167 aa0.79□□□□□ -2.28
PTCD3-205ENST00000464541 KIF21BO75037 1637 aa0.79□□□□□ -2.28
PTCD3-205ENST00000464541 IQGAP1P46940 1657 aa0.79□□□□□ -2.28
PTCD3-205ENST00000464541 VWFP04275 2813 aa0.79□□□□□ -2.28
PTCD3-205ENST00000464541 PTPN13Q12923 2485 aa0.79□□□□□ -2.28
PTCD3-205ENST00000464541 ATP7AQ04656 1500 aa0.79□□□□□ -2.28
PTCD3-205ENST00000464541 CHD8Q9HCK8 2581 aa0.78□□□□□ -2.28
PTCD3-205ENST00000464541 NDUFA1O15239 70 aa0.78□□□□□ -2.28
PTCD3-205ENST00000464541 DEFB131AP59861 70 aa0.78□□□□□ -2.28
PTCD3-205ENST00000464541 ATRQ13535 2644 aa0.78□□□□□ -2.29
PTCD3-205ENST00000464541 TRPM2O94759 1503 aa0.77□□□□□ -2.29
PTCD3-205ENST00000464541 IGF2RP11717 2491 aa0.77□□□□□ -2.29
PTCD3-205ENST00000464541 CHD6Q8TD26 2715 aa0.77□□□□□ -2.29
PTCD3-205ENST00000464541 TRANK1O15050 2925 aa0.77□□□□□ -2.29
PTCD3-205ENST00000464541 NCOR1O75376 2440 aa0.76□□□□□ -2.29
PTCD3-205ENST00000464541 PCNX1Q96RV3 2341 aa0.76□□□□□ -2.29
PTCD3-205ENST00000464541 SAMD9LQ8IVG5 1584 aa0.76□□□□□ -2.29
PTCD3-205ENST00000464541 ZFYVE26Q68DK2 2539 aa0.75□□□□□ -2.29
PTCD3-205ENST00000464541 EP300Q09472 2414 aaPredicted RBP0.74□□□□□ -2.29
PTCD3-205ENST00000464541 IGLV5-48A0A075B6I7 105 aa0.74□□□□□ -2.29
PTCD3-205ENST00000464541 DSPP15924 2871 aaKnown RBP0.74□□□□□ -2.29
PTCD3-205ENST00000464541 PRM1P04553 51 aa0.73□□□□□ -2.29
PTCD3-205ENST00000464541 BSNQ9UPA5 3926 aa0.72□□□□□ -2.29
PTCD3-205ENST00000464541 UNC79Q9P2D8 2635 aa0.72□□□□□ -2.29
PTCD3-205ENST00000464541 C9orf92A6NGG3 77 aa0.72□□□□□ -2.29
PTCD3-205ENST00000464541 NFAT5O94916 1531 aa0.72□□□□□ -2.29
PTCD3-205ENST00000464541 HECTD1Q9ULT8 2610 aa0.69□□□□□ -2.3
PTCD3-205ENST00000464541 M0QY20 66 aa0.69□□□□□ -2.3
PTCD3-205ENST00000464541 MMP24-AS1A0A0U1RRL7 71 aa0.68□□□□□ -2.3
PTCD3-205ENST00000464541 A8MTW9 85 aa0.68□□□□□ -2.3
PTCD3-205ENST00000464541 OTOGQ6ZRI0 2925 aa0.68□□□□□ -2.3
PTCD3-205ENST00000464541 PKD1L2Q7Z442 2459 aa0.68□□□□□ -2.3
PTCD3-205ENST00000464541 CLTCL1P53675 1640 aa0.67□□□□□ -2.3
PTCD3-205ENST00000464541 CREBBPQ92793 2442 aa0.66□□□□□ -2.3
PTCD3-205ENST00000464541 H3BNG1 76 aa0.66□□□□□ -2.3
PTCD3-205ENST00000464541 KRTAP21-1Q3LI58 79 aa0.65□□□□□ -2.31
PTCD3-205ENST00000464541 CEP290O15078 2479 aa0.65□□□□□ -2.31
PTCD3-205ENST00000464541 FAT2Q9NYQ8 4349 aa0.65□□□□□ -2.31
PTCD3-205ENST00000464541 APC2O95996 2303 aa0.64□□□□□ -2.31
PTCD3-205ENST00000464541 SPRR2DP22532 72 aa0.64□□□□□ -2.31
PTCD3-205ENST00000464541 SNRPGP62308 76 aaKnown RBP0.64□□□□□ -2.31
PTCD3-205ENST00000464541 WNK1Q9H4A3 2382 aa0.64□□□□□ -2.31
PTCD3-205ENST00000464541 HIVEP3Q5T1R4 2406 aa0.64□□□□□ -2.31
PTCD3-205ENST00000464541 MUC5ACP98088 5654 aa0.63□□□□□ -2.31
PTCD3-205ENST00000464541 NAV2Q8IVL1 2488 aa0.63□□□□□ -2.31
PTCD3-205ENST00000464541 AKAP13Q12802 2813 aa0.63□□□□□ -2.31
PTCD3-205ENST00000464541 USP24Q9UPU5 2620 aa0.63□□□□□ -2.31
PTCD3-205ENST00000464541 NCOR2Q9Y618 2525 aa0.63□□□□□ -2.31
PTCD3-205ENST00000464541 TNXBP22105 4242 aa0.62□□□□□ -2.31
PTCD3-205ENST00000464541 MAP1BP46821 2468 aaKnown RBP0.62□□□□□ -2.31
PTCD3-205ENST00000464541 M0QZ58 72 aa0.62□□□□□ -2.31
PTCD3-205ENST00000464541 PKD1L1Q8TDX9 2849 aa0.62□□□□□ -2.31
PTCD3-205ENST00000464541 NBASA2RRP1 2371 aa0.62□□□□□ -2.31
PTCD3-205ENST00000464541 PRRC2CQ9Y520 2896 aaKnown RBP0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 251.1 ms