RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 WT1-ASQ06250 92 aa1.57□□□□□ -2.16
HMGB1P13-201ENST00000406019 DEFB106AQ8N104 65 aa1.57□□□□□ -2.16
HMGB1P13-201ENST00000406019 SPRR1AP35321 89 aa1.56□□□□□ -2.16
HMGB1P13-201ENST00000406019 DEFB105AQ8NG35 78 aa1.56□□□□□ -2.16
HMGB1P13-201ENST00000406019 APLNQ9ULZ1 77 aa1.56□□□□□ -2.16
HMGB1P13-201ENST00000406019 HELZ2Q9BYK8 2649 aaKnown RBP1.56□□□□□ -2.16
HMGB1P13-201ENST00000406019 K7EIL1 84 aa1.55□□□□□ -2.16
HMGB1P13-201ENST00000406019 KRTAP10-4P60372 401 aaPredicted RBP1.55□□□□□ -2.16
HMGB1P13-201ENST00000406019 RPL39P5Q59GN2 51 aa1.55□□□□□ -2.16
HMGB1P13-201ENST00000406019 CLPSL2Q6UWE3 100 aa1.54□□□□□ -2.16
HMGB1P13-201ENST00000406019 TOMM7Q9P0U1 55 aa1.54□□□□□ -2.16
HMGB1P13-201ENST00000406019 ROS1P08922 2347 aa1.53□□□□□ -2.16
HMGB1P13-201ENST00000406019 DSPP15924 2871 aaKnown RBP1.53□□□□□ -2.16
HMGB1P13-201ENST00000406019 PCNX1Q96RV3 2341 aa1.53□□□□□ -2.16
HMGB1P13-201ENST00000406019 DEFB108AA8MXU0 73 aa1.52□□□□□ -2.17
HMGB1P13-201ENST00000406019 KLK9Q2XQG4 91 aa1.52□□□□□ -2.17
HMGB1P13-201ENST00000406019 TMEM167AQ8TBQ9 72 aa1.52□□□□□ -2.17
HMGB1P13-201ENST00000406019 PRO0255Q9UI72 69 aa1.52□□□□□ -2.17
HMGB1P13-201ENST00000406019 CELSR2Q9HCU4 2923 aa1.52□□□□□ -2.17
HMGB1P13-201ENST00000406019 DEFB131AP59861 70 aa1.51□□□□□ -2.17
HMGB1P13-201ENST00000406019 PRLHP81277 87 aa1.51□□□□□ -2.17
HMGB1P13-201ENST00000406019 USF3Q68DE3 2245 aa1.51□□□□□ -2.17
HMGB1P13-201ENST00000406019 CNTRLQ7Z7A1 2325 aa1.5□□□□□ -2.17
HMGB1P13-201ENST00000406019 ZNF462Q96JM2 2506 aa1.49□□□□□ -2.17
HMGB1P13-201ENST00000406019 TPRP12270 2363 aaKnown RBP1.49□□□□□ -2.17
HMGB1P13-201ENST00000406019 S4R3F8 94 aa1.49□□□□□ -2.17
HMGB1P13-201ENST00000406019 NAV3Q8IVL0 2385 aa1.48□□□□□ -2.17
HMGB1P13-201ENST00000406019 K7EIM0 57 aa1.48□□□□□ -2.17
HMGB1P13-201ENST00000406019 SPRR1BP22528 89 aa1.48□□□□□ -2.17
HMGB1P13-201ENST00000406019 CHD7Q9P2D1 2997 aa1.48□□□□□ -2.17
HMGB1P13-201ENST00000406019 WNK2Q9Y3S1 2297 aa1.47□□□□□ -2.17
HMGB1P13-201ENST00000406019 PTPRZ1P23471 2315 aaPredicted RBP1.46□□□□□ -2.18
HMGB1P13-201ENST00000406019 SPINK1P00995 79 aa1.45□□□□□ -2.18
HMGB1P13-201ENST00000406019 STATHP02808 62 aa1.45□□□□□ -2.18
HMGB1P13-201ENST00000406019 Q5VSD8 79 aa1.45□□□□□ -2.18
HMGB1P13-201ENST00000406019 OTOGQ6ZRI0 2925 aa1.44□□□□□ -2.18
HMGB1P13-201ENST00000406019 TRANK1O15050 2925 aa1.44□□□□□ -2.18
HMGB1P13-201ENST00000406019 A0A0C4DFX4 3053 aa1.43□□□□□ -2.18
HMGB1P13-201ENST00000406019 TENM1Q9UKZ4 2725 aa1.43□□□□□ -2.18
HMGB1P13-201ENST00000406019 A0A0D9SG42 100 aa1.42□□□□□ -2.18
HMGB1P13-201ENST00000406019 H3BUA1 57 aa1.41□□□□□ -2.18
HMGB1P13-201ENST00000406019 PKDREJQ9NTG1 2253 aa1.4□□□□□ -2.19
HMGB1P13-201ENST00000406019 APELAP0DMC3 54 aa1.4□□□□□ -2.19
HMGB1P13-201ENST00000406019 DEFB109BQ30KR1 87 aa1.4□□□□□ -2.19
HMGB1P13-201ENST00000406019 C2CD3Q4AC94 2353 aa1.4□□□□□ -2.19
HMGB1P13-201ENST00000406019 MGAQ8IWI9 3026 aa1.39□□□□□ -2.19
HMGB1P13-201ENST00000406019 DEFB1P60022 68 aa1.39□□□□□ -2.19
HMGB1P13-201ENST00000406019 WNK1Q9H4A3 2382 aa1.39□□□□□ -2.19
HMGB1P13-201ENST00000406019 MYCBP2O75592 4640 aa1.38□□□□□ -2.19
HMGB1P13-201ENST00000406019 DNAH11Q96DT5 4516 aa1.38□□□□□ -2.19
HMGB1P13-201ENST00000406019 ASH1LQ9NR48 2969 aaKnown RBP1.37□□□□□ -2.19
HMGB1P13-201ENST00000406019 CSPG4Q6UVK1 2322 aa1.37□□□□□ -2.19
HMGB1P13-201ENST00000406019 GVINP1Q7Z2Y8 2422 aa1.36□□□□□ -2.19
HMGB1P13-201ENST00000406019 CRYBG3Q68DQ2 2970 aa1.36□□□□□ -2.19
HMGB1P13-201ENST00000406019 SPTBN1Q01082 2364 aaKnown RBP1.36□□□□□ -2.19
HMGB1P13-201ENST00000406019 PRRC2CQ9Y520 2896 aaKnown RBP1.35□□□□□ -2.19
HMGB1P13-201ENST00000406019 ABCA2Q9BZC7 2435 aa1.35□□□□□ -2.19
HMGB1P13-201ENST00000406019 AKAP13Q12802 2813 aa1.34□□□□□ -2.19
HMGB1P13-201ENST00000406019 F8P00451 2351 aa1.34□□□□□ -2.2
HMGB1P13-201ENST00000406019 VPS13DQ5THJ4 4388 aa1.33□□□□□ -2.2
HMGB1P13-201ENST00000406019 ZNF292O60281 2723 aa1.32□□□□□ -2.2
HMGB1P13-201ENST00000406019 CHD6Q8TD26 2715 aa1.32□□□□□ -2.2
HMGB1P13-201ENST00000406019 SPTBN2O15020 2390 aa1.32□□□□□ -2.2
HMGB1P13-201ENST00000406019 MEGF8Q7Z7M0 2845 aa1.32□□□□□ -2.2
HMGB1P13-201ENST00000406019 CELSR1Q9NYQ6 3014 aa1.32□□□□□ -2.2
HMGB1P13-201ENST00000406019 TENM2Q9NT68 2774 aa1.31□□□□□ -2.2
HMGB1P13-201ENST00000406019 VWFP04275 2813 aa1.31□□□□□ -2.2
HMGB1P13-201ENST00000406019 ABCA12Q86UK0 2595 aa1.31□□□□□ -2.2
HMGB1P13-201ENST00000406019 AKAP6Q13023 2319 aa1.31□□□□□ -2.2
HMGB1P13-201ENST00000406019 SRRM2Q9UQ35 2752 aaKnown RBP1.3□□□□□ -2.2
HMGB1P13-201ENST00000406019 COL6A3P12111 3177 aa1.29□□□□□ -2.2
HMGB1P13-201ENST00000406019 NBPF19A0A087WUL8 3843 aa1.29□□□□□ -2.2
HMGB1P13-201ENST00000406019 CACNA1HO95180 2353 aa1.29□□□□□ -2.2
HMGB1P13-201ENST00000406019 EP300Q09472 2414 aaPredicted RBP1.29□□□□□ -2.2
HMGB1P13-201ENST00000406019 CEP290O15078 2479 aa1.29□□□□□ -2.2
HMGB1P13-201ENST00000406019 POLQO75417 2590 aa1.28□□□□□ -2.2
HMGB1P13-201ENST00000406019 TNRC18O15417 2968 aaPredicted RBP1.28□□□□□ -2.2
HMGB1P13-201ENST00000406019 NOP10Q9NPE3 64 aaKnown RBP1.28□□□□□ -2.2
HMGB1P13-201ENST00000406019 HECTD1Q9ULT8 2610 aa1.28□□□□□ -2.2
HMGB1P13-201ENST00000406019 H0YGG7 62 aa1.27□□□□□ -2.21
HMGB1P13-201ENST00000406019 CSMD3Q7Z407 3707 aa1.27□□□□□ -2.21
HMGB1P13-201ENST00000406019 UBR5O95071 2799 aaPredicted RBP1.26□□□□□ -2.21
HMGB1P13-201ENST00000406019 SPTBN4Q9H254 2564 aa1.26□□□□□ -2.21
HMGB1P13-201ENST00000406019 SPTA1P02549 2419 aa1.26□□□□□ -2.21
HMGB1P13-201ENST00000406019 PKD1L2Q7Z442 2459 aa1.26□□□□□ -2.21
HMGB1P13-201ENST00000406019 CHD9Q3L8U1 2897 aa1.26□□□□□ -2.21
HMGB1P13-201ENST00000406019 DNAH8Q96JB1 4490 aa1.25□□□□□ -2.21
HMGB1P13-201ENST00000406019 TTC28Q96AY4 2481 aa1.25□□□□□ -2.21
HMGB1P13-201ENST00000406019 PDZD2O15018 2839 aa1.25□□□□□ -2.21
HMGB1P13-201ENST00000406019 DEFB136Q30KP8 78 aa1.24□□□□□ -2.21
HMGB1P13-201ENST00000406019 ACACAQ13085 2346 aa1.24□□□□□ -2.21
HMGB1P13-201ENST00000406019 RANBP2P49792 3224 aaKnown RBP1.24□□□□□ -2.21
HMGB1P13-201ENST00000406019 COX14Q96I36 57 aa1.23□□□□□ -2.21
HMGB1P13-201ENST00000406019 RELNP78509 3460 aa1.22□□□□□ -2.21
HMGB1P13-201ENST00000406019 HTN1P15515 57 aa1.22□□□□□ -2.21
HMGB1P13-201ENST00000406019 RHPN1-AS1Q9BWJ2 59 aa1.22□□□□□ -2.21
HMGB1P13-201ENST00000406019 NCOR1O75376 2440 aa1.21□□□□□ -2.22
HMGB1P13-201ENST00000406019 DMBT1Q9UGM3 2413 aaPredicted RBP1.21□□□□□ -2.22
HMGB1P13-201ENST00000406019 ATRQ13535 2644 aa1.21□□□□□ -2.22
HMGB1P13-201ENST00000406019 ANK2Q01484 3957 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms