RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 SPANXA2-OT1Q8N9U9 137 aa10.15□□□□□ -0.78
HMGA1-202ENST00000347617 PSCAO43653 123 aa10.14□□□□□ -0.79
HMGA1-202ENST00000347617 PMAIP1Q13794 54 aa10.14□□□□□ -0.79
HMGA1-202ENST00000347617 TRAV22A0A0B4J277 110 aa10.14□□□□□ -0.79
HMGA1-202ENST00000347617 ST20-AS1Q8NBB2 130 aa10.11□□□□□ -0.79
HMGA1-202ENST00000347617 DNAH9Q9NYC9 4486 aa10.1□□□□□ -0.79
HMGA1-202ENST00000347617 IGLV8-61A0A075B6I0 122 aa10.1□□□□□ -0.79
HMGA1-202ENST00000347617 RPL37AP8A6NKH3 93 aa10.09□□□□□ -0.79
HMGA1-202ENST00000347617 MRPL55Q7Z7F7 128 aaKnown RBP10.09□□□□□ -0.79
HMGA1-202ENST00000347617 LINC00476Q8WZB0 136 aa10.09□□□□□ -0.79
HMGA1-202ENST00000347617 APLNQ9ULZ1 77 aa10.09□□□□□ -0.79
HMGA1-202ENST00000347617 UBE2BP63146 152 aa10.09□□□□□ -0.79
HMGA1-202ENST00000347617 LIMD2Q9BT23 127 aa10.08□□□□□ -0.8
HMGA1-202ENST00000347617 LRCOL1A6NCL2 159 aa10.07□□□□□ -0.8
HMGA1-202ENST00000347617 NUPR2A6NF83 97 aa10.07□□□□□ -0.8
HMGA1-202ENST00000347617 REG3GQ6UW15 175 aa10.06□□□□□ -0.8
HMGA1-202ENST00000347617 PSPHP1O15172 72 aa10.05□□□□□ -0.8
HMGA1-202ENST00000347617 STAB2Q8WWQ8 2551 aa10.04□□□□□ -0.8
HMGA1-202ENST00000347617 UBE2AP49459 152 aa10.03□□□□□ -0.8
HMGA1-202ENST00000347617 IGFL1Q6UW32 110 aa10.03□□□□□ -0.8
HMGA1-202ENST00000347617 KRTAP29-1A8MX34 341 aaPredicted RBP10.03□□□□□ -0.8
HMGA1-202ENST00000347617 COL7A1Q02388 2944 aa10.03□□□□□ -0.8
HMGA1-202ENST00000347617 LINC00208Q96KT6 92 aa10.01□□□□□ -0.81
HMGA1-202ENST00000347617 FAM168BA1KXE4 195 aa10.01□□□□□ -0.81
HMGA1-202ENST00000347617 A8MUN3 132 aa10.01□□□□□ -0.81
HMGA1-202ENST00000347617 H0Y9P7 68 aa10□□□□□ -0.81
HMGA1-202ENST00000347617 WFDC13Q8IUB5 93 aa10□□□□□ -0.81
HMGA1-202ENST00000347617 Q5VV11 94 aa9.99□□□□□ -0.81
HMGA1-202ENST00000347617 KRTAP7-1Q8IUC3 87 aa9.99□□□□□ -0.81
HMGA1-202ENST00000347617 PRR4Q16378 134 aa9.98□□□□□ -0.81
HMGA1-202ENST00000347617 CASC2Q6XLA1 102 aa9.98□□□□□ -0.81
HMGA1-202ENST00000347617 UBE2DNLQ8IWF7 75 aa9.98□□□□□ -0.81
HMGA1-202ENST00000347617 Q8N9P0 234 aaPredicted RBP9.97□□□□□ -0.81
HMGA1-202ENST00000347617 DYNC2H1Q8NCM8 4307 aaKnown RBP9.97□□□□□ -0.81
HMGA1-202ENST00000347617 A0A087WSZ3 146 aa9.96□□□□□ -0.81
HMGA1-202ENST00000347617 CD164Q04900 197 aa9.95□□□□□ -0.82
HMGA1-202ENST00000347617 C9orf163Q8N9P6 203 aa9.94□□□□□ -0.82
HMGA1-202ENST00000347617 A8MWP4 228 aa9.93□□□□□ -0.82
HMGA1-202ENST00000347617 SPRR1BP22528 89 aa9.93□□□□□ -0.82
HMGA1-202ENST00000347617 Q75L30 129 aa9.92□□□□□ -0.82
HMGA1-202ENST00000347617 LOC101927531A0A1B0GV80 90 aa9.91□□□□□ -0.82
HMGA1-202ENST00000347617 CHKB-CPT1BH3BT56 60 aa9.91□□□□□ -0.82
HMGA1-202ENST00000347617 CNBPP62633 177 aaKnown RBP9.9□□□□□ -0.82
HMGA1-202ENST00000347617 KRTAP1-5Q9BYS1 174 aa9.9□□□□□ -0.82
HMGA1-202ENST00000347617 H0Y9J4 135 aa9.89□□□□□ -0.83
HMGA1-202ENST00000347617 ATP11AUNQ6ZP68 121 aa9.89□□□□□ -0.83
HMGA1-202ENST00000347617 CASC10Q5T4H9 136 aa9.88□□□□□ -0.83
HMGA1-202ENST00000347617 PRR15LQ9BU68 103 aa9.88□□□□□ -0.83
HMGA1-202ENST00000347617 MEGF8Q7Z7M0 2845 aa9.88□□□□□ -0.83
HMGA1-202ENST00000347617 IGLV7-46A0A075B6I9 117 aa9.88□□□□□ -0.83
HMGA1-202ENST00000347617 NBDYA0A0U1RRE5 68 aa9.88□□□□□ -0.83
HMGA1-202ENST00000347617 DEFB116Q30KQ4 102 aa9.88□□□□□ -0.83
HMGA1-202ENST00000347617 LINC00472Q9H8W2 130 aa9.88□□□□□ -0.83
HMGA1-202ENST00000347617 C14orf177Q52M58 125 aa9.87□□□□□ -0.83
HMGA1-202ENST00000347617 DNAH1Q9P2D7 4330 aa9.87□□□□□ -0.83
HMGA1-202ENST00000347617 C16orf90A8MZG2 172 aa9.86□□□□□ -0.83
HMGA1-202ENST00000347617 PRKDCP78527 4128 aaKnown RBP9.86□□□□□ -0.83
HMGA1-202ENST00000347617 RPL37AP61513 92 aaKnown RBP9.86□□□□□ -0.83
HMGA1-202ENST00000347617 KTN1-AS1Q86SY8 53 aa9.86□□□□□ -0.83
HMGA1-202ENST00000347617 TP53AIP1Q9HCN2 124 aa9.86□□□□□ -0.83
HMGA1-202ENST00000347617 NDUFS5O43920 106 aa9.85□□□□□ -0.83
HMGA1-202ENST00000347617 COA5Q86WW8 74 aa9.84□□□□□ -0.83
HMGA1-202ENST00000347617 PRLHP81277 87 aa9.83□□□□□ -0.84
HMGA1-202ENST00000347617 DNAH7Q8WXX0 4024 aa9.81□□□□□ -0.84
HMGA1-202ENST00000347617 A0A0G2JQZ4 141 aa9.81□□□□□ -0.84
HMGA1-202ENST00000347617 A0A1W2PNN7 141 aa9.81□□□□□ -0.84
HMGA1-202ENST00000347617 MMP24-AS1A0A0U1RRL7 71 aa9.8□□□□□ -0.84
HMGA1-202ENST00000347617 CSMD3Q7Z407 3707 aa9.8□□□□□ -0.84
HMGA1-202ENST00000347617 MOBPQ13875 183 aa9.79□□□□□ -0.84
HMGA1-202ENST00000347617 CDC42SE1Q9NRR8 79 aa9.79□□□□□ -0.84
HMGA1-202ENST00000347617 A6NED7 52 aa9.78□□□□□ -0.84
HMGA1-202ENST00000347617 Q6ZRN7 208 aaPredicted RBP9.78□□□□□ -0.84
HMGA1-202ENST00000347617 LINC01558Q9Y6Z2 57 aa9.78□□□□□ -0.84
HMGA1-202ENST00000347617 A0A096LNI7 61 aa9.78□□□□□ -0.84
HMGA1-202ENST00000347617 PLECQ15149 4684 aaKnown RBP9.78□□□□□ -0.84
HMGA1-202ENST00000347617 ASB16-AS1Q495Z4 193 aa9.76□□□□□ -0.85
HMGA1-202ENST00000347617 PHF5AQ7RTV0 110 aaKnown RBP9.76□□□□□ -0.85
HMGA1-202ENST00000347617 WWC2-AS2Q96NR7 200 aa9.76□□□□□ -0.85
HMGA1-202ENST00000347617 Q6ZR54 194 aa9.75□□□□□ -0.85
HMGA1-202ENST00000347617 PLAC8Q9NZF1 115 aa9.75□□□□□ -0.85
HMGA1-202ENST00000347617 LCA10Q71F78 164 aa9.73□□□□□ -0.85
HMGA1-202ENST00000347617 TENM2Q9NT68 2774 aa9.72□□□□□ -0.85
HMGA1-202ENST00000347617 VPS13DQ5THJ4 4388 aa9.72□□□□□ -0.85
HMGA1-202ENST00000347617 A6NN06 94 aa9.72□□□□□ -0.85
HMGA1-202ENST00000347617 SPTSSBQ8NFR3 76 aa9.72□□□□□ -0.85
HMGA1-202ENST00000347617 A8MU10 97 aa9.71□□□□□ -0.85
HMGA1-202ENST00000347617 STARD9Q9P2P6 4700 aa9.71□□□□□ -0.86
HMGA1-202ENST00000347617 IGKV2-24A0A0C4DH68 120 aa9.7□□□□□ -0.86
HMGA1-202ENST00000347617 LYSTQ99698 3801 aa9.68□□□□□ -0.86
HMGA1-202ENST00000347617 C8orf17Q9NRJ1 99 aa9.67□□□□□ -0.86
HMGA1-202ENST00000347617 A0A087WTM6 91 aa9.65□□□□□ -0.87
HMGA1-202ENST00000347617 C7orf65Q6ZTY9 151 aa9.65□□□□□ -0.87
HMGA1-202ENST00000347617 RBM12B-AS1Q9P1G2 102 aa9.65□□□□□ -0.87
HMGA1-202ENST00000347617 PCOTHQ58A44 107 aa9.63□□□□□ -0.87
HMGA1-202ENST00000347617 Q96NJ1 140 aa9.63□□□□□ -0.87
HMGA1-202ENST00000347617 C1orf134Q5TEV5 83 aa9.63□□□□□ -0.87
HMGA1-202ENST00000347617 DNAH10Q8IVF4 4471 aa9.6□□□□□ -0.87
HMGA1-202ENST00000347617 A0A1B0GVX0 72 aa9.6□□□□□ -0.87
HMGA1-202ENST00000347617 LY6G6CO95867 125 aa9.6□□□□□ -0.87
HMGA1-202ENST00000347617 KRTAP13-1Q8IUC0 172 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms