RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MPLKIPQ8TAP9 179 aa5.12□□□□□ -1.59
HMGB1-203ENST00000341423 TRIOO75962 3097 aa5.12□□□□□ -1.59
HMGB1-203ENST00000341423 A0A1B0GU69 56 aa5.12□□□□□ -1.59
HMGB1-203ENST00000341423 S4R3F8 94 aa5.12□□□□□ -1.59
HMGB1-203ENST00000341423 A8MUN3 132 aa5.12□□□□□ -1.59
HMGB1-203ENST00000341423 TRAV7A0A075B6U4 112 aa5.11□□□□□ -1.59
HMGB1-203ENST00000341423 PANO1I0J062 215 aa5.1□□□□□ -1.59
HMGB1-203ENST00000341423 WDFY4Q6ZS81 3184 aa5.1□□□□□ -1.59
HMGB1-203ENST00000341423 A6NED7 52 aa5.1□□□□□ -1.59
HMGB1-203ENST00000341423 ADAMTSL4-AS1Q5T5F5 129 aa5.1□□□□□ -1.59
HMGB1-203ENST00000341423 ASH1LQ9NR48 2969 aaKnown RBP5.09□□□□□ -1.59
HMGB1-203ENST00000341423 SMIM26A0A096LP01 95 aa5.08□□□□□ -1.6
HMGB1-203ENST00000341423 SMIM29Q86T20 159 aa5.08□□□□□ -1.6
HMGB1-203ENST00000341423 ZCCHC13Q8WW36 166 aaKnown RBP5.07□□□□□ -1.6
HMGB1-203ENST00000341423 SPINK7P58062 85 aa5.06□□□□□ -1.6
HMGB1-203ENST00000341423 H3BPC8 53 aa5.06□□□□□ -1.6
HMGB1-203ENST00000341423 VPS13AQ96RL7 3174 aa5.05□□□□□ -1.6
HMGB1-203ENST00000341423 CFAP54Q96N23 3096 aa5.05□□□□□ -1.6
HMGB1-203ENST00000341423 WDFY3Q8IZQ1 3526 aa5.05□□□□□ -1.6
HMGB1-203ENST00000341423 Q6ZQT0 140 aa5.04□□□□□ -1.6
HMGB1-203ENST00000341423 TENM1Q9UKZ4 2725 aa5.04□□□□□ -1.6
HMGB1-203ENST00000341423 CELSR3Q9NYQ7 3312 aa5.04□□□□□ -1.6
HMGB1-203ENST00000341423 FBN3Q75N90 2809 aa5.04□□□□□ -1.6
HMGB1-203ENST00000341423 A0A1W2PNM2 257 aa5.04□□□□□ -1.6
HMGB1-203ENST00000341423 LINC00483Q53H64 154 aa5.03□□□□□ -1.6
HMGB1-203ENST00000341423 FAM218AQ96MZ4 157 aa5.03□□□□□ -1.6
HMGB1-203ENST00000341423 TSPEAR-AS2P59090 65 aa5.03□□□□□ -1.6
HMGB1-203ENST00000341423 ATP5EP56381 51 aaPredicted RBP5.02□□□□□ -1.61
HMGB1-203ENST00000341423 COL6A3P12111 3177 aa5.02□□□□□ -1.61
HMGB1-203ENST00000341423 MGAQ8IWI9 3026 aa5.01□□□□□ -1.61
HMGB1-203ENST00000341423 COA6Q5JTJ3 125 aaKnown RBP5.01□□□□□ -1.61
HMGB1-203ENST00000341423 A0A0D9SG42 100 aa5□□□□□ -1.61
HMGB1-203ENST00000341423 CRIPTQ9P021 101 aa5□□□□□ -1.61
HMGB1-203ENST00000341423 SNURFQ9Y675 71 aa5□□□□□ -1.61
HMGB1-203ENST00000341423 C4orf26Q17RF5 130 aa4.99□□□□□ -1.61
HMGB1-203ENST00000341423 KRTAP10-10P60014 251 aa4.98□□□□□ -1.61
HMGB1-203ENST00000341423 RPS29P62273 56 aaKnown RBP4.98□□□□□ -1.61
HMGB1-203ENST00000341423 Q8N377 158 aa4.97□□□□□ -1.61
HMGB1-203ENST00000341423 LINC01546A6NGU7 62 aa4.97□□□□□ -1.61
HMGB1-203ENST00000341423 EYSQ5T1H1 3165 aa4.96□□□□□ -1.62
HMGB1-203ENST00000341423 M0QZ58 72 aa4.96□□□□□ -1.62
HMGB1-203ENST00000341423 Q6ZRN7 208 aaPredicted RBP4.95□□□□□ -1.62
HMGB1-203ENST00000341423 A0A0G2JQZ4 141 aa4.95□□□□□ -1.62
HMGB1-203ENST00000341423 DNAH14Q0VDD8 3507 aa4.93□□□□□ -1.62
HMGB1-203ENST00000341423 TACC2O95359 2948 aa4.93□□□□□ -1.62
HMGB1-203ENST00000341423 C1orf195Q5TG92 126 aa4.92□□□□□ -1.62
HMGB1-203ENST00000341423 PRO2289Q9P1D8 64 aa4.92□□□□□ -1.62
HMGB1-203ENST00000341423 TNRC18O15417 2968 aaPredicted RBP4.91□□□□□ -1.62
HMGB1-203ENST00000341423 DMDP11532 3685 aa4.91□□□□□ -1.62
HMGB1-203ENST00000341423 PKD1L1Q8TDX9 2849 aa4.91□□□□□ -1.62
HMGB1-203ENST00000341423 FAM104AQ969W3 186 aa4.9□□□□□ -1.62
HMGB1-203ENST00000341423 TPRXLQ17RH7 258 aa4.9□□□□□ -1.62
HMGB1-203ENST00000341423 RPL37P61927 97 aaKnown RBP4.9□□□□□ -1.63
HMGB1-203ENST00000341423 SPEGQ15772 3267 aa4.89□□□□□ -1.63
HMGB1-203ENST00000341423 A0A087X002 238 aa4.89□□□□□ -1.63
HMGB1-203ENST00000341423 NIPBLQ6KC79 2804 aaeCLIP4.89□□□□□ -1.63
HMGB1-203ENST00000341423 LOC110117498A0A087WWA1 95 aa4.89□□□□□ -1.63
HMGB1-203ENST00000341423 H1FX-AS1Q4G0G2 97 aa4.88□□□□□ -1.63
HMGB1-203ENST00000341423 FREM2Q5SZK8 3169 aa4.88□□□□□ -1.63
HMGB1-203ENST00000341423 FAM240AA0A1B0GVK7 77 aa4.88□□□□□ -1.63
HMGB1-203ENST00000341423 SPENQ96T58 3664 aaKnown RBP4.88□□□□□ -1.63
HMGB1-203ENST00000341423 Q5W150 140 aa4.86□□□□□ -1.63
HMGB1-203ENST00000341423 MYO15AQ9UKN7 3530 aa4.86□□□□□ -1.63
HMGB1-203ENST00000341423 ZFHX3Q15911 3703 aa4.86□□□□□ -1.63
HMGB1-203ENST00000341423 H7BZZ5 65 aa4.85□□□□□ -1.63
HMGB1-203ENST00000341423 APCP25054 2843 aa4.85□□□□□ -1.63
HMGB1-203ENST00000341423 LAMA1P25391 3075 aa4.85□□□□□ -1.63
HMGB1-203ENST00000341423 KALRNO60229 2985 aa4.83□□□□□ -1.64
HMGB1-203ENST00000341423 Q75L30 129 aa4.83□□□□□ -1.64
HMGB1-203ENST00000341423 RPS28P62857 69 aaKnown RBP4.83□□□□□ -1.64
HMGB1-203ENST00000341423 SPRR1BP22528 89 aa4.82□□□□□ -1.64
HMGB1-203ENST00000341423 A0A1B0GVY2 172 aa4.81□□□□□ -1.64
HMGB1-203ENST00000341423 UQCR11O14957 56 aa4.81□□□□□ -1.64
HMGB1-203ENST00000341423 NF1P21359 2839 aa4.8□□□□□ -1.64
HMGB1-203ENST00000341423 A0A087WVE0 104 aa4.79□□□□□ -1.64
HMGB1-203ENST00000341423 BOD1L1Q8NFC6 3051 aa4.79□□□□□ -1.64
HMGB1-203ENST00000341423 KLKP1Q107X0 134 aa4.79□□□□□ -1.64
HMGB1-203ENST00000341423 NBEAL2Q6ZNJ1 2754 aa4.79□□□□□ -1.64
HMGB1-203ENST00000341423 A0A096LNJ9 63 aa4.78□□□□□ -1.64
HMGB1-203ENST00000341423 FRYLO94915 3013 aa4.78□□□□□ -1.65
HMGB1-203ENST00000341423 Q8NDZ9 215 aa4.77□□□□□ -1.65
HMGB1-203ENST00000341423 SPRR1AP35321 89 aa4.76□□□□□ -1.65
HMGB1-203ENST00000341423 CDC42SE1Q9NRR8 79 aa4.76□□□□□ -1.65
HMGB1-203ENST00000341423 ZFHX4Q86UP3 3567 aa4.76□□□□□ -1.65
HMGB1-203ENST00000341423 ADM2Q7Z4H4 148 aa4.75□□□□□ -1.65
HMGB1-203ENST00000341423 SRRM2Q9UQ35 2752 aaKnown RBP4.75□□□□□ -1.65
HMGB1-203ENST00000341423 KRTAP10-8P60410 259 aa4.74□□□□□ -1.65
HMGB1-203ENST00000341423 COL12A1Q99715 3063 aa4.74□□□□□ -1.65
HMGB1-203ENST00000341423 URB1-AS1Q96HZ7 61 aa4.74□□□□□ -1.65
HMGB1-203ENST00000341423 CFAP47Q6ZTR5 3102 aa4.74□□□□□ -1.65
HMGB1-203ENST00000341423 KRTAP26-1Q6PEX3 210 aa4.72□□□□□ -1.65
HMGB1-203ENST00000341423 LUZP6Q538Z0 58 aa4.72□□□□□ -1.65
HMGB1-203ENST00000341423 A8MUU9 505 aa4.72□□□□□ -1.65
HMGB1-203ENST00000341423 FBN2P35556 2912 aa4.72□□□□□ -1.65
HMGB1-203ENST00000341423 A0A1B0GU33 70 aa4.71□□□□□ -1.66
HMGB1-203ENST00000341423 MUC3AQ02505 3323 aa4.7□□□□□ -1.66
HMGB1-203ENST00000341423 DMXL2Q8TDJ6 3036 aa4.7□□□□□ -1.66
HMGB1-203ENST00000341423 COX7CP15954 63 aa4.69□□□□□ -1.66
HMGB1-203ENST00000341423 XP32Q5T750 250 aa4.69□□□□□ -1.66
HMGB1-203ENST00000341423 ATMQ13315 3056 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms