RNA–Protein interactions for RNA: ENST00000338888.3

RUNX3-202, Transcript of runt related transcription factor 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RUNX3, Length 2,629 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNX3-202ENST00000338888 IGFL1Q6UW32 110 aa12.94□□□□□ -0.34
RUNX3-202ENST00000338888 IGLV5-37A0A075B6J1 123 aa12.93□□□□□ -0.34
RUNX3-202ENST00000338888 Q5VV11 94 aa12.93□□□□□ -0.34
RUNX3-202ENST00000338888 MRPL55Q7Z7F7 128 aaKnown RBP12.93□□□□□ -0.34
RUNX3-202ENST00000338888 A0A087WSZ3 146 aa12.92□□□□□ -0.34
RUNX3-202ENST00000338888 CASC10Q5T4H9 136 aa12.91□□□□□ -0.34
RUNX3-202ENST00000338888 KRTAP10-11P60412 298 aa12.91□□□□□ -0.34
RUNX3-202ENST00000338888 REG3GQ6UW15 175 aa12.88□□□□□ -0.35
RUNX3-202ENST00000338888 H0Y9P7 68 aa12.87□□□□□ -0.35
RUNX3-202ENST00000338888 CHKB-CPT1BH3BT56 60 aa12.87□□□□□ -0.35
RUNX3-202ENST00000338888 Q8N9P0 234 aaPredicted RBP12.86□□□□□ -0.35
RUNX3-202ENST00000338888 KRTAP29-1A8MX34 341 aaPredicted RBP12.85□□□□□ -0.35
RUNX3-202ENST00000338888 NOTCH1P46531 2555 aa12.85□□□□□ -0.35
RUNX3-202ENST00000338888 ANK2Q01484 3957 aa12.84□□□□□ -0.35
RUNX3-202ENST00000338888 DEFB131BA0A096LNP1 70 aa12.83□□□□□ -0.36
RUNX3-202ENST00000338888 PRLHP81277 87 aa12.82□□□□□ -0.36
RUNX3-202ENST00000338888 CASC2Q6XLA1 102 aa12.82□□□□□ -0.36
RUNX3-202ENST00000338888 SPANXA2-OT1Q8N9U9 137 aa12.82□□□□□ -0.36
RUNX3-202ENST00000338888 PRR15LQ9BU68 103 aa12.82□□□□□ -0.36
RUNX3-202ENST00000338888 CMYA5Q8N3K9 4069 aa12.82□□□□□ -0.36
RUNX3-202ENST00000338888 DNAH10OSP0CZ25 163 aa12.81□□□□□ -0.36
RUNX3-202ENST00000338888 LIMD2Q9BT23 127 aa12.8□□□□□ -0.36
RUNX3-202ENST00000338888 UBE2AP49459 152 aa12.79□□□□□ -0.36
RUNX3-202ENST00000338888 C16orf90A8MZG2 172 aa12.79□□□□□ -0.36
RUNX3-202ENST00000338888 TENM3Q9P273 2699 aa12.77□□□□□ -0.36
RUNX3-202ENST00000338888 CNBPP62633 177 aaKnown RBP12.77□□□□□ -0.36
RUNX3-202ENST00000338888 SPTSSBQ8NFR3 76 aa12.75□□□□□ -0.37
RUNX3-202ENST00000338888 H3BPC8 53 aa12.75□□□□□ -0.37
RUNX3-202ENST00000338888 IGLV8-61A0A075B6I0 122 aa12.74□□□□□ -0.37
RUNX3-202ENST00000338888 C11orf45Q8TAV5 145 aa12.74□□□□□ -0.37
RUNX3-202ENST00000338888 C9orf163Q8N9P6 203 aa12.73□□□□□ -0.37
RUNX3-202ENST00000338888 CD164Q04900 197 aa12.72□□□□□ -0.37
RUNX3-202ENST00000338888 LINC00588Q9Y4M8 146 aa12.72□□□□□ -0.37
RUNX3-202ENST00000338888 NBEAL1Q6ZS30 2694 aa12.71□□□□□ -0.37
RUNX3-202ENST00000338888 LCA10Q71F78 164 aa12.7□□□□□ -0.38
RUNX3-202ENST00000338888 IGKV2-24A0A0C4DH68 120 aa12.69□□□□□ -0.38
RUNX3-202ENST00000338888 A8MWP4 228 aa12.69□□□□□ -0.38
RUNX3-202ENST00000338888 COA5Q86WW8 74 aa12.69□□□□□ -0.38
RUNX3-202ENST00000338888 A6NED7 52 aa12.68□□□□□ -0.38
RUNX3-202ENST00000338888 LINC00472Q9H8W2 130 aa12.66□□□□□ -0.38
RUNX3-202ENST00000338888 MGAM2Q2M2H8 2515 aa12.66□□□□□ -0.38
RUNX3-202ENST00000338888 Q75L30 129 aa12.65□□□□□ -0.38
RUNX3-202ENST00000338888 A0A096LNI7 61 aa12.64□□□□□ -0.39
RUNX3-202ENST00000338888 H0Y9J4 135 aa12.64□□□□□ -0.39
RUNX3-202ENST00000338888 KTN1-AS1Q86SY8 53 aa12.64□□□□□ -0.39
RUNX3-202ENST00000338888 SRRM2Q9UQ35 2752 aaKnown RBP12.64□□□□□ -0.39
RUNX3-202ENST00000338888 PCOTHQ58A44 107 aa12.62□□□□□ -0.39
RUNX3-202ENST00000338888 IGLV7-46A0A075B6I9 117 aa12.61□□□□□ -0.39
RUNX3-202ENST00000338888 LOC101927531A0A1B0GV80 90 aa12.61□□□□□ -0.39
RUNX3-202ENST00000338888 ATP11AUNQ6ZP68 121 aa12.61□□□□□ -0.39
RUNX3-202ENST00000338888 DNAH3Q8TD57 4116 aa12.61□□□□□ -0.39
RUNX3-202ENST00000338888 MMP24-AS1A0A0U1RRL7 71 aa12.59□□□□□ -0.39
RUNX3-202ENST00000338888 DNAH1Q9P2D7 4330 aa12.58□□□□□ -0.4
RUNX3-202ENST00000338888 KRTAP11-1Q8IUC1 163 aa12.58□□□□□ -0.4
RUNX3-202ENST00000338888 RBM12B-AS1Q9P1G2 102 aa12.56□□□□□ -0.4
RUNX3-202ENST00000338888 SPAG11AQ6PDA7 123 aa12.55□□□□□ -0.4
RUNX3-202ENST00000338888 MDFIQ99750 246 aa12.55□□□□□ -0.4
RUNX3-202ENST00000338888 PHF5AQ7RTV0 110 aaKnown RBP12.54□□□□□ -0.4
RUNX3-202ENST00000338888 K7EIL1 84 aa12.53□□□□□ -0.4
RUNX3-202ENST00000338888 A6NN06 94 aa12.53□□□□□ -0.4
RUNX3-202ENST00000338888 CDC42SE1Q9NRR8 79 aa12.52□□□□□ -0.41
RUNX3-202ENST00000338888 SPRR1BP22528 89 aa12.51□□□□□ -0.41
RUNX3-202ENST00000338888 CHTF8P0CG12 524 aa12.49□□□□□ -0.41
RUNX3-202ENST00000338888 LINC01558Q9Y6Z2 57 aa12.47□□□□□ -0.41
RUNX3-202ENST00000338888 NDUFS5O43920 106 aa12.47□□□□□ -0.41
RUNX3-202ENST00000338888 DNAH10Q8IVF4 4471 aa12.45□□□□□ -0.42
RUNX3-202ENST00000338888 MOBPQ13875 183 aa12.43□□□□□ -0.42
RUNX3-202ENST00000338888 TENM2Q9NT68 2774 aa12.43□□□□□ -0.42
RUNX3-202ENST00000338888 PLAC8Q9NZF1 115 aa12.42□□□□□ -0.42
RUNX3-202ENST00000338888 HUWE1Q7Z6Z7 4374 aaKnown RBP12.42□□□□□ -0.42
RUNX3-202ENST00000338888 CSMD3Q7Z407 3707 aa12.42□□□□□ -0.42
RUNX3-202ENST00000338888 SPINK7P58062 85 aa12.41□□□□□ -0.42
RUNX3-202ENST00000338888 TP53AIP1Q9HCN2 124 aa12.41□□□□□ -0.42
RUNX3-202ENST00000338888 KRTAP1-5Q9BYS1 174 aa12.4□□□□□ -0.42
RUNX3-202ENST00000338888 HRES1P13985 223 aa12.39□□□□□ -0.43
RUNX3-202ENST00000338888 Q96NJ1 140 aa12.39□□□□□ -0.43
RUNX3-202ENST00000338888 ASB16-AS1Q495Z4 193 aa12.39□□□□□ -0.43
RUNX3-202ENST00000338888 Q6ZR54 194 aa12.38□□□□□ -0.43
RUNX3-202ENST00000338888 C8orf17Q9NRJ1 99 aa12.38□□□□□ -0.43
RUNX3-202ENST00000338888 IGLV9-49A0A0B4J1Y8 123 aa12.37□□□□□ -0.43
RUNX3-202ENST00000338888 C7orf65Q6ZTY9 151 aa12.35□□□□□ -0.43
RUNX3-202ENST00000338888 STAB2Q8WWQ8 2551 aa12.35□□□□□ -0.43
RUNX3-202ENST00000338888 COL7A1Q02388 2944 aa12.35□□□□□ -0.43
RUNX3-202ENST00000338888 IGHV6-1A0A0B4J1U7 121 aa12.35□□□□□ -0.43
RUNX3-202ENST00000338888 LYSTQ99698 3801 aa12.28□□□□□ -0.44
RUNX3-202ENST00000338888 A0A1B0GVX0 72 aa12.26□□□□□ -0.45
RUNX3-202ENST00000338888 PRR26Q8N8Z3 221 aa12.26□□□□□ -0.45
RUNX3-202ENST00000338888 A0A087X002 238 aa12.25□□□□□ -0.45
RUNX3-202ENST00000338888 NOTCH2NLQ7Z3S9 236 aa12.25□□□□□ -0.45
RUNX3-202ENST00000338888 MRPL34Q9BQ48 92 aaKnown RBP12.25□□□□□ -0.45
RUNX3-202ENST00000338888 KRTAP13-1Q8IUC0 172 aa12.24□□□□□ -0.45
RUNX3-202ENST00000338888 DNAH9Q9NYC9 4486 aa12.24□□□□□ -0.45
RUNX3-202ENST00000338888 PANO1I0J062 215 aa12.24□□□□□ -0.45
RUNX3-202ENST00000338888 CDK2AP2O75956 126 aa12.23□□□□□ -0.45
RUNX3-202ENST00000338888 C14orf177Q52M58 125 aa12.19□□□□□ -0.46
RUNX3-202ENST00000338888 UBE2DNLQ8IWF7 75 aa12.16□□□□□ -0.46
RUNX3-202ENST00000338888 Q5W150 140 aa12.14□□□□□ -0.47
RUNX3-202ENST00000338888 DNHD1Q96M86 4753 aa12.13□□□□□ -0.47
RUNX3-202ENST00000338888 LINC00313P59037 77 aa12.12□□□□□ -0.47
RUNX3-202ENST00000338888 ANAPC11Q9NYG5 84 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms