RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZNF706Q9Y5V0 76 aaPredicted RBP10.92□□□□□ -0.66
CLN3-259ENST00000637551 ETDCA0A1B0GVM5 59 aa10.91□□□□□ -0.66
CLN3-259ENST00000637551 EIF4EBP3O60516 100 aaPredicted RBP10.91□□□□□ -0.66
CLN3-259ENST00000637551 SCGB1D1O95968 90 aa10.91□□□□□ -0.66
CLN3-259ENST00000637551 TRAV23DV6A0A075B6W5 121 aa10.89□□□□□ -0.67
CLN3-259ENST00000637551 CRYGAP11844 174 aa10.89□□□□□ -0.67
CLN3-259ENST00000637551 PRR26Q8N8Z3 221 aa10.89□□□□□ -0.67
CLN3-259ENST00000637551 NPC2P61916 151 aa10.88□□□□□ -0.67
CLN3-259ENST00000637551 JOSD1Q15040 202 aaPredicted RBP10.88□□□□□ -0.67
CLN3-259ENST00000637551 Q6ZRX8 168 aa10.88□□□□□ -0.67
CLN3-259ENST00000637551 DLEU1O43261 78 aa10.87□□□□□ -0.67
CLN3-259ENST00000637551 CTAG1AP78358 180 aa10.87□□□□□ -0.67
CLN3-259ENST00000637551 B5MCH6 92 aa10.86□□□□□ -0.67
CLN3-259ENST00000637551 ZNF73O43830 326 aaPredicted RBP10.86□□□□□ -0.67
CLN3-259ENST00000637551 HIGD2AQ9BW72 106 aa10.86□□□□□ -0.67
CLN3-259ENST00000637551 HINT1P49773 126 aaPredicted RBP10.85□□□□□ -0.67
CLN3-259ENST00000637551 COX8AP10176 69 aa10.84□□□□□ -0.67
CLN3-259ENST00000637551 SPRR4Q96PI1 79 aa10.83□□□□□ -0.68
CLN3-259ENST00000637551 TRBV7-6A0A0J9YX20 115 aa10.82□□□□□ -0.68
CLN3-259ENST00000637551 SMCR5Q8TEV8 140 aa10.82□□□□□ -0.68
CLN3-259ENST00000637551 A0A087X002 238 aa10.81□□□□□ -0.68
CLN3-259ENST00000637551 TRAV13-2A0A0B4J235 113 aa10.81□□□□□ -0.68
CLN3-259ENST00000637551 OR13C6PQ8NH95 151 aa10.81□□□□□ -0.68
CLN3-259ENST00000637551 LINC00483Q53H64 154 aa10.8□□□□□ -0.68
CLN3-259ENST00000637551 MUSTN1Q8IVN3 82 aa10.8□□□□□ -0.68
CLN3-259ENST00000637551 VAMP8Q9BV40 100 aa10.79□□□□□ -0.68
CLN3-259ENST00000637551 TYMSOSQ8TAI1 123 aa10.78□□□□□ -0.68
CLN3-259ENST00000637551 Q9BRP9 147 aa10.78□□□□□ -0.68
CLN3-259ENST00000637551 DHRS4-AS1Q9P1J3 65 aa10.78□□□□□ -0.68
CLN3-259ENST00000637551 HIGD1BQ9P298 99 aa10.78□□□□□ -0.68
CLN3-259ENST00000637551 ELOF1P60002 83 aaKnown RBP10.76□□□□□ -0.69
CLN3-259ENST00000637551 A4D1N5 150 aa10.75□□□□□ -0.69
CLN3-259ENST00000637551 KRTAP13-2Q52LG2 175 aa10.75□□□□□ -0.69
CLN3-259ENST00000637551 SPATA45Q537H7 98 aa10.75□□□□□ -0.69
CLN3-259ENST00000637551 A0A1B0GWB2 263 aa10.73□□□□□ -0.69
CLN3-259ENST00000637551 SLC25A34Q6PIV7 304 aa10.73□□□□□ -0.69
CLN3-259ENST00000637551 PAM16Q9Y3D7 125 aa10.73□□□□□ -0.69
CLN3-259ENST00000637551 A6NDN8 102 aa10.72□□□□□ -0.69
CLN3-259ENST00000637551 C6orf99Q4VX62 202 aa10.72□□□□□ -0.69
CLN3-259ENST00000637551 COX7BP24311 80 aa10.71□□□□□ -0.69
CLN3-259ENST00000637551 HIST1H4GQ99525 98 aa10.71□□□□□ -0.69
CLN3-259ENST00000637551 TAL2Q16559 108 aa10.7□□□□□ -0.7
CLN3-259ENST00000637551 PYY3Q5JQD4 70 aa10.7□□□□□ -0.7
CLN3-259ENST00000637551 SPAG11AQ6PDA7 123 aa10.7□□□□□ -0.7
CLN3-259ENST00000637551 ANAPC11Q9NYG5 84 aa10.7□□□□□ -0.7
CLN3-259ENST00000637551 ERC2-IT1O76042 136 aa10.69□□□□□ -0.7
CLN3-259ENST00000637551 LINC00304Q8N9R0 145 aa10.69□□□□□ -0.7
CLN3-259ENST00000637551 SPRR1BP22528 89 aa10.68□□□□□ -0.7
CLN3-259ENST00000637551 C14orf144Q96I85 54 aa10.68□□□□□ -0.7
CLN3-259ENST00000637551 NHP2Q9NX24 153 aaKnown RBP10.68□□□□□ -0.7
CLN3-259ENST00000637551 TMA7Q9Y2S6 64 aaKnown RBP10.68□□□□□ -0.7
CLN3-259ENST00000637551 GAGE2AQ6NT46 116 aa10.66□□□□□ -0.7
CLN3-259ENST00000637551 VAMP3Q15836 100 aa10.65□□□□□ -0.7
CLN3-259ENST00000637551 SSBP3-AS1Q7Z2R9 100 aa10.65□□□□□ -0.7
CLN3-259ENST00000637551 SMIM11BQ8TCY0 68 aa10.65□□□□□ -0.7
CLN3-259ENST00000637551 KRTAP9-2Q9BYQ4 174 aa10.65□□□□□ -0.7
CLN3-259ENST00000637551 C2orf91Q6ZV80 131 aa10.64□□□□□ -0.71
CLN3-259ENST00000637551 C3orf22Q8N5N4 141 aa10.64□□□□□ -0.71
CLN3-259ENST00000637551 RPS29P62273 56 aaKnown RBP10.63□□□□□ -0.71
CLN3-259ENST00000637551 A0A0B4J2C4 111 aa10.62□□□□□ -0.71
CLN3-259ENST00000637551 TMEM238LA0A1B0GVL6 79 aa10.62□□□□□ -0.71
CLN3-259ENST00000637551 A6NJY4 79 aa10.62□□□□□ -0.71
CLN3-259ENST00000637551 BVES-AS1Q5T3Y7 98 aa10.6□□□□□ -0.71
CLN3-259ENST00000637551 IGLV5-48A0A075B6I7 105 aa10.59□□□□□ -0.71
CLN3-259ENST00000637551 SLC25A20O43772 301 aa10.59□□□□□ -0.71
CLN3-259ENST00000637551 SPINK1P00995 79 aa10.59□□□□□ -0.71
CLN3-259ENST00000637551 C4orf48Q5BLP8 95 aa10.58□□□□□ -0.72
CLN3-259ENST00000637551 CEND1Q8N111 149 aa10.58□□□□□ -0.72
CLN3-259ENST00000637551 Q8NBF4 154 aa10.58□□□□□ -0.72
CLN3-259ENST00000637551 TEX49A0A1B0GTD5 131 aa10.57□□□□□ -0.72
CLN3-259ENST00000637551 CFC1BP0CG36 223 aa10.56□□□□□ -0.72
CLN3-259ENST00000637551 CFC1P0CG37 223 aa10.56□□□□□ -0.72
CLN3-259ENST00000637551 ST20-AS1Q8NBB2 130 aa10.56□□□□□ -0.72
CLN3-259ENST00000637551 UQCR10Q9UDW1 63 aa10.56□□□□□ -0.72
CLN3-259ENST00000637551 LAMTOR3Q9UHA4 124 aa10.56□□□□□ -0.72
CLN3-259ENST00000637551 HSD52Q0P140 79 aa10.55□□□□□ -0.72
CLN3-259ENST00000637551 MOBPQ13875 183 aa10.55□□□□□ -0.72
CLN3-259ENST00000637551 RAB37Q96AX2 223 aa10.55□□□□□ -0.72
CLN3-259ENST00000637551 LINC00575Q6W349 94 aa10.54□□□□□ -0.72
CLN3-259ENST00000637551 IGLV9-49A0A0B4J1Y8 123 aa10.53□□□□□ -0.72
CLN3-259ENST00000637551 TSPAN13O95857 204 aa10.53□□□□□ -0.72
CLN3-259ENST00000637551 KRTAP9-6A0A140TA67 174 aa10.52□□□□□ -0.73
CLN3-259ENST00000637551 PPDPFLQ8WWR9 84 aa10.52□□□□□ -0.73
CLN3-259ENST00000637551 C12orf57Q99622 126 aa10.51□□□□□ -0.73
CLN3-259ENST00000637551 hADV29S1A0JD25 119 aa10.5□□□□□ -0.73
CLN3-259ENST00000637551 H0YGX0 51 aa10.5□□□□□ -0.73
CLN3-259ENST00000637551 SNCGO76070 127 aa10.5□□□□□ -0.73
CLN3-259ENST00000637551 SMIM6P0DI80 62 aa10.5□□□□□ -0.73
CLN3-259ENST00000637551 LINC01547P58512 204 aaPredicted RBP10.5□□□□□ -0.73
CLN3-259ENST00000637551 C9orf153Q5TBE3 101 aa10.5□□□□□ -0.73
CLN3-259ENST00000637551 FP248Q71RG6 208 aaPredicted RBP10.5□□□□□ -0.73
CLN3-259ENST00000637551 PRO1854Q9UHT4 67 aa10.5□□□□□ -0.73
CLN3-259ENST00000637551 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.49□□□□□ -0.73
CLN3-259ENST00000637551 CD164Q04900 197 aa10.48□□□□□ -0.73
CLN3-259ENST00000637551 PRR4Q16378 134 aa10.48□□□□□ -0.73
CLN3-259ENST00000637551 A0A1B0GX51 115 aa10.47□□□□□ -0.73
CLN3-259ENST00000637551 FXYD2P54710 66 aa10.47□□□□□ -0.73
CLN3-259ENST00000637551 OCIAD2Q56VL3 154 aa10.46□□□□□ -0.73
CLN3-259ENST00000637551 LPAP08519 4548 aa10.45□□□□□ -0.74
CLN3-259ENST00000637551 SMIM29Q86T20 159 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms