RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 FAM30AQ9NZY2 134 aa11.95□□□□□ -0.5
CLN3-258ENST00000637184 PRYO14603 147 aa11.95□□□□□ -0.5
CLN3-258ENST00000637184 UBE2BP63146 152 aa11.95□□□□□ -0.5
CLN3-258ENST00000637184 Q6ZSA8 131 aa11.95□□□□□ -0.5
CLN3-258ENST00000637184 H0YGX0 51 aa11.93□□□□□ -0.5
CLN3-258ENST00000637184 CLEC2BQ92478 149 aa11.92□□□□□ -0.5
CLN3-258ENST00000637184 TRBV20-1A0A075B6N2 111 aa11.92□□□□□ -0.5
CLN3-258ENST00000637184 TCL1BO95988 128 aa11.92□□□□□ -0.5
CLN3-258ENST00000637184 DNAH8Q96JB1 4490 aa11.92□□□□□ -0.5
CLN3-258ENST00000637184 PKHD1P08F94 4074 aa11.91□□□□□ -0.5
CLN3-258ENST00000637184 K7EP34 96 aa11.91□□□□□ -0.5
CLN3-258ENST00000637184 REG3GQ6UW15 175 aa11.9□□□□□ -0.5
CLN3-258ENST00000637184 GTF2H5Q6ZYL4 71 aa11.9□□□□□ -0.5
CLN3-258ENST00000637184 CIRBP-AS1Q8TBR5 109 aa11.9□□□□□ -0.51
CLN3-258ENST00000637184 TRBV7-6A0A0J9YX20 115 aa11.89□□□□□ -0.51
CLN3-258ENST00000637184 SPRR1AP35321 89 aa11.89□□□□□ -0.51
CLN3-258ENST00000637184 COX7BP24311 80 aa11.88□□□□□ -0.51
CLN3-258ENST00000637184 ATXN8Q156A1 80 aa11.88□□□□□ -0.51
CLN3-258ENST00000637184 SCXQ7RTU7 201 aa11.88□□□□□ -0.51
CLN3-258ENST00000637184 KRTAP11-1Q8IUC1 163 aa11.87□□□□□ -0.51
CLN3-258ENST00000637184 FAM218AQ96MZ4 157 aa11.87□□□□□ -0.51
CLN3-258ENST00000637184 ETDCA0A1B0GVM5 59 aa11.87□□□□□ -0.51
CLN3-258ENST00000637184 LST1O00453 97 aa11.87□□□□□ -0.51
CLN3-258ENST00000637184 ELOF1P60002 83 aaKnown RBP11.87□□□□□ -0.51
CLN3-258ENST00000637184 H3BMG7 143 aa11.86□□□□□ -0.51
CLN3-258ENST00000637184 KRTAP4-16G5E9R7 235 aaPredicted RBP11.85□□□□□ -0.51
CLN3-258ENST00000637184 HAMPP81172 84 aa11.83□□□□□ -0.52
CLN3-258ENST00000637184 UBE2V1Q13404 147 aa11.83□□□□□ -0.52
CLN3-258ENST00000637184 LINC00575Q6W349 94 aa11.83□□□□□ -0.52
CLN3-258ENST00000637184 LINC00528Q8N1L1 170 aa11.83□□□□□ -0.52
CLN3-258ENST00000637184 LRP1BQ9NZR2 4599 aa11.82□□□□□ -0.52
CLN3-258ENST00000637184 B5MCH6 92 aa11.82□□□□□ -0.52
CLN3-258ENST00000637184 DYNC1H1Q14204 4646 aaKnown RBP11.82□□□□□ -0.52
CLN3-258ENST00000637184 SLC25A20O43772 301 aa11.82□□□□□ -0.52
CLN3-258ENST00000637184 SNCGO76070 127 aa11.82□□□□□ -0.52
CLN3-258ENST00000637184 Q6ZRX8 168 aa11.82□□□□□ -0.52
CLN3-258ENST00000637184 A0A1B0GX51 115 aa11.81□□□□□ -0.52
CLN3-258ENST00000637184 TRACP01848 142 aa11.81□□□□□ -0.52
CLN3-258ENST00000637184 FAM19A1Q7Z5A9 133 aa11.8□□□□□ -0.52
CLN3-258ENST00000637184 hADV29S1A0JD25 119 aa11.79□□□□□ -0.52
CLN3-258ENST00000637184 DNAL4O96015 105 aa11.79□□□□□ -0.52
CLN3-258ENST00000637184 PSORS1C2Q9UIG4 136 aa11.78□□□□□ -0.52
CLN3-258ENST00000637184 C9JAW5 83 aa11.77□□□□□ -0.52
CLN3-258ENST00000637184 BCE1O60756 84 aa11.77□□□□□ -0.52
CLN3-258ENST00000637184 INAFM2P0DMQ5 153 aa11.77□□□□□ -0.52
CLN3-258ENST00000637184 DHRS4-AS1Q9P1J3 65 aa11.77□□□□□ -0.53
CLN3-258ENST00000637184 PRLHP81277 87 aa11.76□□□□□ -0.53
CLN3-258ENST00000637184 UBE2AP49459 152 aa11.75□□□□□ -0.53
CLN3-258ENST00000637184 MTURNQ8N3F0 131 aa11.75□□□□□ -0.53
CLN3-258ENST00000637184 Q9BRP9 147 aa11.75□□□□□ -0.53
CLN3-258ENST00000637184 H0Y9J4 135 aa11.74□□□□□ -0.53
CLN3-258ENST00000637184 C1orf137Q5JT78 98 aa11.74□□□□□ -0.53
CLN3-258ENST00000637184 XGP55808 180 aa11.73□□□□□ -0.53
CLN3-258ENST00000637184 F8W1H4 67 aa11.72□□□□□ -0.53
CLN3-258ENST00000637184 Q6ZQY7 126 aa11.71□□□□□ -0.54
CLN3-258ENST00000637184 SMCR5Q8TEV8 140 aa11.71□□□□□ -0.54
CLN3-258ENST00000637184 HIGD2AQ9BW72 106 aa11.71□□□□□ -0.54
CLN3-258ENST00000637184 PRO0461Q9UI25 63 aa11.71□□□□□ -0.54
CLN3-258ENST00000637184 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.7□□□□□ -0.54
CLN3-258ENST00000637184 ORMDL1Q9P0S3 153 aa11.7□□□□□ -0.54
CLN3-258ENST00000637184 BAALC-AS2P0C853 105 aa11.69□□□□□ -0.54
CLN3-258ENST00000637184 KRTAP13-1Q8IUC0 172 aa11.69□□□□□ -0.54
CLN3-258ENST00000637184 H3BT86 120 aa11.67□□□□□ -0.54
CLN3-258ENST00000637184 ERC2-IT1O76042 136 aa11.67□□□□□ -0.54
CLN3-258ENST00000637184 APOBP04114 4563 aaKnown RBP11.67□□□□□ -0.54
CLN3-258ENST00000637184 SMCPP49901 116 aaPredicted RBP11.67□□□□□ -0.54
CLN3-258ENST00000637184 ANKRD29Q8N6D5 301 aa11.67□□□□□ -0.54
CLN3-258ENST00000637184 OCIAD2Q56VL3 154 aa11.66□□□□□ -0.54
CLN3-258ENST00000637184 GHRHP01286 108 aa11.65□□□□□ -0.54
CLN3-258ENST00000637184 IGLV7-43P04211 117 aa11.65□□□□□ -0.54
CLN3-258ENST00000637184 ZNF861PO60384 105 aa11.64□□□□□ -0.55
CLN3-258ENST00000637184 TMEM256-PLSCR3K7ERE1 68 aa11.64□□□□□ -0.55
CLN3-258ENST00000637184 H3BQ85 93 aa11.63□□□□□ -0.55
CLN3-258ENST00000637184 SMR3BP02814 79 aaPredicted RBP11.62□□□□□ -0.55
CLN3-258ENST00000637184 ST20-AS1Q8NBB2 130 aa11.62□□□□□ -0.55
CLN3-258ENST00000637184 LINC01600Q96MT4 127 aa11.62□□□□□ -0.55
CLN3-258ENST00000637184 DEFB105AQ8NG35 78 aa11.62□□□□□ -0.55
CLN3-258ENST00000637184 SRRM2Q9UQ35 2752 aaKnown RBP11.59□□□□□ -0.55
CLN3-258ENST00000637184 IGLV5-48A0A075B6I7 105 aa11.59□□□□□ -0.55
CLN3-258ENST00000637184 CDK2AP2O75956 126 aa11.59□□□□□ -0.55
CLN3-258ENST00000637184 RPL37AP61513 92 aaKnown RBP11.59□□□□□ -0.55
CLN3-258ENST00000637184 LINC01547P58512 204 aaPredicted RBP11.57□□□□□ -0.56
CLN3-258ENST00000637184 ETDBQ3ZM63 59 aa11.57□□□□□ -0.56
CLN3-258ENST00000637184 Q8N377 158 aa11.57□□□□□ -0.56
CLN3-258ENST00000637184 PPDPFLQ8WWR9 84 aa11.57□□□□□ -0.56
CLN3-258ENST00000637184 VPS13BQ7Z7G8 4022 aa11.57□□□□□ -0.56
CLN3-258ENST00000637184 EPPK1P58107 5090 aaKnown RBP11.56□□□□□ -0.56
CLN3-258ENST00000637184 TEX49A0A1B0GTD5 131 aa11.56□□□□□ -0.56
CLN3-258ENST00000637184 TEN1Q86WV5 123 aa11.55□□□□□ -0.56
CLN3-258ENST00000637184 LAMTOR3Q9UHA4 124 aa11.54□□□□□ -0.56
CLN3-258ENST00000637184 GAGE2AQ6NT46 116 aa11.54□□□□□ -0.56
CLN3-258ENST00000637184 ZNF706Q9Y5V0 76 aaPredicted RBP11.54□□□□□ -0.56
CLN3-258ENST00000637184 NDUFV3P56181 108 aaKnown RBP11.51□□□□□ -0.57
CLN3-258ENST00000637184 SPRR4Q96PI1 79 aa11.51□□□□□ -0.57
CLN3-258ENST00000637184 A0A1B0GV72 72 aa11.49□□□□□ -0.57
CLN3-258ENST00000637184 SPRR1BP22528 89 aa11.49□□□□□ -0.57
CLN3-258ENST00000637184 C3orf22Q8N5N4 141 aa11.49□□□□□ -0.57
CLN3-258ENST00000637184 JMJD7-PLA2G4BH0Y9G9 81 aa11.49□□□□□ -0.57
CLN3-258ENST00000637184 FAT1Q14517 4588 aa11.47□□□□□ -0.57
CLN3-258ENST00000637184 FAM229AH3BQW9 127 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms