RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 Q6ZQY7 126 aa6.96□□□□□ -1.3
CUX1-221ENST00000622516 ZNF73O43830 326 aaPredicted RBP6.96□□□□□ -1.3
CUX1-221ENST00000622516 OBSCN-AS1Q96MR7 158 aa6.96□□□□□ -1.3
CUX1-221ENST00000622516 MUC7Q8TAX7 377 aa6.95□□□□□ -1.3
CUX1-221ENST00000622516 LINC00167Q96N53 147 aa6.95□□□□□ -1.3
CUX1-221ENST00000622516 LINC00846Q9NV44 126 aa6.95□□□□□ -1.3
CUX1-221ENST00000622516 FAM168BA1KXE4 195 aa6.95□□□□□ -1.3
CUX1-221ENST00000622516 TMEM256-PLSCR3K7ERE1 68 aa6.95□□□□□ -1.3
CUX1-221ENST00000622516 SERTAD4-AS1Q5TG53 156 aa6.95□□□□□ -1.3
CUX1-221ENST00000622516 PLECQ15149 4684 aaKnown RBP6.95□□□□□ -1.3
CUX1-221ENST00000622516 DIRC1Q969H9 104 aa6.94□□□□□ -1.3
CUX1-221ENST00000622516 LAMTOR3Q9UHA4 124 aa6.93□□□□□ -1.3
CUX1-221ENST00000622516 DNHD1Q96M86 4753 aa6.93□□□□□ -1.3
CUX1-221ENST00000622516 PRKDCP78527 4128 aaKnown RBP6.93□□□□□ -1.3
CUX1-221ENST00000622516 BRK1Q8WUW1 75 aa6.93□□□□□ -1.3
CUX1-221ENST00000622516 IGKV3D-7A0A0C4DH55 119 aa6.93□□□□□ -1.3
CUX1-221ENST00000622516 SDIM1Q6ZPB5 146 aa6.93□□□□□ -1.3
CUX1-221ENST00000622516 KRTAP1-5Q9BYS1 174 aa6.93□□□□□ -1.3
CUX1-221ENST00000622516 RPL37AP8A6NKH3 93 aa6.92□□□□□ -1.3
CUX1-221ENST00000622516 HIST1H4AP62805 103 aaKnown RBP6.92□□□□□ -1.3
CUX1-221ENST00000622516 CD164Q04900 197 aa6.92□□□□□ -1.3
CUX1-221ENST00000622516 PMAIP1Q13794 54 aa6.92□□□□□ -1.3
CUX1-221ENST00000622516 M0R378 163 aa6.92□□□□□ -1.3
CUX1-221ENST00000622516 COX7BP24311 80 aa6.92□□□□□ -1.3
CUX1-221ENST00000622516 M0R2N4 97 aa6.9□□□□□ -1.3
CUX1-221ENST00000622516 SERP2Q8N6R1 65 aa6.9□□□□□ -1.3
CUX1-221ENST00000622516 NKAPP1Q8N9T2 125 aa6.9□□□□□ -1.3
CUX1-221ENST00000622516 EPM2AB3EWF7 344 aa6.9□□□□□ -1.31
CUX1-221ENST00000622516 JMJD7-PLA2G4BH0Y9G9 81 aa6.9□□□□□ -1.31
CUX1-221ENST00000622516 CCKP06307 115 aa6.9□□□□□ -1.31
CUX1-221ENST00000622516 UPK3BQ9BT76 320 aa6.9□□□□□ -1.31
CUX1-221ENST00000622516 ELOF1P60002 83 aaKnown RBP6.89□□□□□ -1.31
CUX1-221ENST00000622516 C7orf33Q8WU49 177 aa6.89□□□□□ -1.31
CUX1-221ENST00000622516 SRRM2Q9UQ35 2752 aaKnown RBP6.89□□□□□ -1.31
CUX1-221ENST00000622516 H3BS24 57 aa6.89□□□□□ -1.31
CUX1-221ENST00000622516 RBM3P98179 157 aaKnown RBP6.89□□□□□ -1.31
CUX1-221ENST00000622516 UBE2DNLQ8IWF7 75 aa6.88□□□□□ -1.31
CUX1-221ENST00000622516 MEGF8Q7Z7M0 2845 aa6.88□□□□□ -1.31
CUX1-221ENST00000622516 STARD9Q9P2P6 4700 aa6.88□□□□□ -1.31
CUX1-221ENST00000622516 A0A087WVE0 104 aa6.87□□□□□ -1.31
CUX1-221ENST00000622516 KRTAP7-1Q8IUC3 87 aa6.87□□□□□ -1.31
CUX1-221ENST00000622516 DEFB105AQ8NG35 78 aa6.87□□□□□ -1.31
CUX1-221ENST00000622516 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.86□□□□□ -1.31
CUX1-221ENST00000622516 PSCAO43653 123 aa6.86□□□□□ -1.31
CUX1-221ENST00000622516 LINC00528Q8N1L1 170 aa6.86□□□□□ -1.31
CUX1-221ENST00000622516 SERP1Q9Y6X1 66 aa6.86□□□□□ -1.31
CUX1-221ENST00000622516 TGP01266 2768 aa6.86□□□□□ -1.31
CUX1-221ENST00000622516 IGKV2-24A0A0C4DH68 120 aa6.85□□□□□ -1.31
CUX1-221ENST00000622516 RMI2Q96E14 147 aa6.85□□□□□ -1.31
CUX1-221ENST00000622516 SMIM26A0A096LP01 95 aa6.84□□□□□ -1.31
CUX1-221ENST00000622516 Q6ZQT0 140 aa6.84□□□□□ -1.31
CUX1-221ENST00000622516 APLNQ9ULZ1 77 aa6.84□□□□□ -1.31
CUX1-221ENST00000622516 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.83□□□□□ -1.32
CUX1-221ENST00000622516 FP248Q71RG6 208 aaPredicted RBP6.83□□□□□ -1.32
CUX1-221ENST00000622516 KCNQ1DNQ9H478 68 aa6.83□□□□□ -1.32
CUX1-221ENST00000622516 KMT2AQ03164 3969 aa6.83□□□□□ -1.32
CUX1-221ENST00000622516 B9D2Q9BPU9 175 aa6.83□□□□□ -1.32
CUX1-221ENST00000622516 DYNC2H1Q8NCM8 4307 aaKnown RBP6.82□□□□□ -1.32
CUX1-221ENST00000622516 TLX1NBP0CAT3 122 aa6.82□□□□□ -1.32
CUX1-221ENST00000622516 Q6JHZ5 121 aa6.81□□□□□ -1.32
CUX1-221ENST00000622516 TRBV7-6A0A0J9YX20 115 aa6.81□□□□□ -1.32
CUX1-221ENST00000622516 A0A096LNI7 61 aa6.81□□□□□ -1.32
CUX1-221ENST00000622516 IGLV1-50A0A075B6I6 118 aa6.8□□□□□ -1.32
CUX1-221ENST00000622516 ST20-AS1Q8NBB2 130 aa6.8□□□□□ -1.32
CUX1-221ENST00000622516 Q9BRP9 147 aa6.8□□□□□ -1.32
CUX1-221ENST00000622516 MRPL55Q7Z7F7 128 aaKnown RBP6.8□□□□□ -1.32
CUX1-221ENST00000622516 CHTF8P0CG12 524 aa6.79□□□□□ -1.32
CUX1-221ENST00000622516 UBL5Q9BZL1 73 aa6.79□□□□□ -1.32
CUX1-221ENST00000622516 LOC110117498A0A087WWA1 95 aa6.79□□□□□ -1.32
CUX1-221ENST00000622516 HAMPP81172 84 aa6.79□□□□□ -1.32
CUX1-221ENST00000622516 ETDCA0A1B0GVM5 59 aa6.78□□□□□ -1.32
CUX1-221ENST00000622516 A0A1W2PNN7 141 aa6.78□□□□□ -1.32
CUX1-221ENST00000622516 ERC2-IT1O76042 136 aa6.78□□□□□ -1.32
CUX1-221ENST00000622516 FUSP35637 526 aaKnown RBP eCLIP6.78□□□□□ -1.325e-7■■■■□ 23.7
CUX1-221ENST00000622516 Q6ZRX8 168 aa6.78□□□□□ -1.32
CUX1-221ENST00000622516 SCXQ7RTU7 201 aa6.78□□□□□ -1.32
CUX1-221ENST00000622516 Q8N377 158 aa6.78□□□□□ -1.32
CUX1-221ENST00000622516 TRBV7-4A0A0J9YYF1 115 aa6.77□□□□□ -1.33
CUX1-221ENST00000622516 KRTAP4-16G5E9R7 235 aaPredicted RBP6.77□□□□□ -1.33
CUX1-221ENST00000622516 PLA2G2DQ9UNK4 145 aa6.77□□□□□ -1.33
CUX1-221ENST00000622516 GHRHP01286 108 aa6.76□□□□□ -1.33
CUX1-221ENST00000622516 UBE2BP63146 152 aa6.76□□□□□ -1.33
CUX1-221ENST00000622516 Q6ZVQ6 151 aa6.76□□□□□ -1.33
CUX1-221ENST00000622516 C20orf197Q8N268 126 aa6.75□□□□□ -1.33
CUX1-221ENST00000622516 PRR15Q8IV56 129 aa6.75□□□□□ -1.33
CUX1-221ENST00000622516 C3orf84H3BNL1 204 aa6.75□□□□□ -1.33
CUX1-221ENST00000622516 PRLHP81277 87 aa6.75□□□□□ -1.33
CUX1-221ENST00000622516 IGLV5-37A0A075B6J1 123 aa6.74□□□□□ -1.33
CUX1-221ENST00000622516 LINC01547P58512 204 aaPredicted RBP6.74□□□□□ -1.33
CUX1-221ENST00000622516 NBDYA0A0U1RRE5 68 aa6.74□□□□□ -1.33
CUX1-221ENST00000622516 PRYO14603 147 aa6.74□□□□□ -1.33
CUX1-221ENST00000622516 SPRR1AP35321 89 aa6.74□□□□□ -1.33
CUX1-221ENST00000622516 C16orf90A8MZG2 172 aa6.73□□□□□ -1.33
CUX1-221ENST00000622516 REG3GQ6UW15 175 aa6.73□□□□□ -1.33
CUX1-221ENST00000622516 LINC00474Q9P2X8 69 aa6.73□□□□□ -1.33
CUX1-221ENST00000622516 A0A0G2JQZ4 141 aa6.73□□□□□ -1.33
CUX1-221ENST00000622516 H3BQ85 93 aa6.73□□□□□ -1.33
CUX1-221ENST00000622516 KRTAP11-1Q8IUC1 163 aa6.73□□□□□ -1.33
CUX1-221ENST00000622516 CNBPP62633 177 aaKnown RBP6.72□□□□□ -1.33
CUX1-221ENST00000622516 PHF5AQ7RTV0 110 aaKnown RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms