RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 NPC2P61916 151 aa11.24□□□□□ -0.61
CDX1-202ENST00000616154 HSD52Q0P140 79 aa11.24□□□□□ -0.61
CDX1-202ENST00000616154 NKAPP1Q8N9T2 125 aa11.24□□□□□ -0.61
CDX1-202ENST00000616154 RPL37AP8A6NKH3 93 aa11.23□□□□□ -0.61
CDX1-202ENST00000616154 RPL24P83731 157 aaKnown RBP11.23□□□□□ -0.61
CDX1-202ENST00000616154 KRTAP13-1Q8IUC0 172 aa11.23□□□□□ -0.61
CDX1-202ENST00000616154 MUC2Q02817 5179 aa11.22□□□□□ -0.61
CDX1-202ENST00000616154 RPL28P46779 137 aaKnown RBP11.22□□□□□ -0.61
CDX1-202ENST00000616154 CEND1Q8N111 149 aa11.22□□□□□ -0.61
CDX1-202ENST00000616154 TRBV10-2A0A0K0K1G8 114 aa11.21□□□□□ -0.61
CDX1-202ENST00000616154 GAGE10A6NGK3 116 aa11.21□□□□□ -0.61
CDX1-202ENST00000616154 DDTP30046 118 aa11.2□□□□□ -0.62
CDX1-202ENST00000616154 IGKV2-28A0A075B6P5 120 aa11.19□□□□□ -0.62
CDX1-202ENST00000616154 A4D1N5 150 aa11.19□□□□□ -0.62
CDX1-202ENST00000616154 IGKV2D-28P01615 120 aa11.19□□□□□ -0.62
CDX1-202ENST00000616154 A0A087X002 238 aa11.17□□□□□ -0.62
CDX1-202ENST00000616154 M0R378 163 aa11.17□□□□□ -0.62
CDX1-202ENST00000616154 FXYD2P54710 66 aa11.17□□□□□ -0.62
CDX1-202ENST00000616154 CTAG1AP78358 180 aa11.17□□□□□ -0.62
CDX1-202ENST00000616154 TSPAN13O95857 204 aa11.15□□□□□ -0.62
CDX1-202ENST00000616154 NCR3O14931 201 aa11.14□□□□□ -0.63
CDX1-202ENST00000616154 CRYGAP11844 174 aa11.14□□□□□ -0.63
CDX1-202ENST00000616154 LINC00337Q8N6G1 96 aa11.14□□□□□ -0.63
CDX1-202ENST00000616154 TMEM126AQ9H061 195 aa11.14□□□□□ -0.63
CDX1-202ENST00000616154 TMEM238LA0A1B0GVL6 79 aa11.13□□□□□ -0.63
CDX1-202ENST00000616154 A6NJY4 79 aa11.13□□□□□ -0.63
CDX1-202ENST00000616154 IGLV6-57P01721 117 aa11.13□□□□□ -0.63
CDX1-202ENST00000616154 BVES-AS1Q5T3Y7 98 aa11.13□□□□□ -0.63
CDX1-202ENST00000616154 TYMSOSQ8TAI1 123 aa11.13□□□□□ -0.63
CDX1-202ENST00000616154 A0A1B0GWB2 263 aa11.12□□□□□ -0.63
CDX1-202ENST00000616154 CFC1BP0CG36 223 aa11.12□□□□□ -0.63
CDX1-202ENST00000616154 CFC1P0CG37 223 aa11.12□□□□□ -0.63
CDX1-202ENST00000616154 A0A0B4J2C4 111 aa11.11□□□□□ -0.63
CDX1-202ENST00000616154 UBE2AP49459 152 aa11.11□□□□□ -0.63
CDX1-202ENST00000616154 M0R143 59 aa11.1□□□□□ -0.63
CDX1-202ENST00000616154 TRAV13-2A0A0B4J235 113 aa11.09□□□□□ -0.63
CDX1-202ENST00000616154 TRBV10-3A0A0K0K1G6 114 aa11.09□□□□□ -0.63
CDX1-202ENST00000616154 A0A0U1RQV1 116 aa11.09□□□□□ -0.63
CDX1-202ENST00000616154 HINT1P49773 126 aaPredicted RBP11.09□□□□□ -0.63
CDX1-202ENST00000616154 FAM229BQ4G0N7 80 aa11.08□□□□□ -0.64
CDX1-202ENST00000616154 KCNQ1DNQ9H478 68 aa11.08□□□□□ -0.64
CDX1-202ENST00000616154 PRLHP81277 87 aa11.07□□□□□ -0.64
CDX1-202ENST00000616154 KRTAP13-2Q52LG2 175 aa11.07□□□□□ -0.64
CDX1-202ENST00000616154 ANAPC11Q9NYG5 84 aa11.07□□□□□ -0.64
CDX1-202ENST00000616154 S100A7L2Q5SY68 101 aa11.06□□□□□ -0.64
CDX1-202ENST00000616154 FAM19A1Q7Z5A9 133 aa11.06□□□□□ -0.64
CDX1-202ENST00000616154 NHP2Q9NX24 153 aaKnown RBP11.06□□□□□ -0.64
CDX1-202ENST00000616154 SPRR1AP35321 89 aa11.05□□□□□ -0.64
CDX1-202ENST00000616154 A6NDN8 102 aa11.04□□□□□ -0.64
CDX1-202ENST00000616154 PRYO14603 147 aa11.04□□□□□ -0.64
CDX1-202ENST00000616154 OR13C6PQ8NH95 151 aa11.04□□□□□ -0.64
CDX1-202ENST00000616154 PRO1854Q9UHT4 67 aa11.04□□□□□ -0.64
CDX1-202ENST00000616154 CBY1Q9Y3M2 126 aa11.04□□□□□ -0.64
CDX1-202ENST00000616154 RAB37Q96AX2 223 aa11.03□□□□□ -0.64
CDX1-202ENST00000616154 KRTAP4-16G5E9R7 235 aaPredicted RBP11.02□□□□□ -0.65
CDX1-202ENST00000616154 TRAV23DV6A0A075B6W5 121 aa11.01□□□□□ -0.65
CDX1-202ENST00000616154 PCP4L1A6NKN8 68 aa11.01□□□□□ -0.65
CDX1-202ENST00000616154 K7ERJ3 54 aa11.01□□□□□ -0.65
CDX1-202ENST00000616154 LINC00304Q8N9R0 145 aa11.01□□□□□ -0.65
CDX1-202ENST00000616154 SNHG12Q9BXW3 62 aa11□□□□□ -0.65
CDX1-202ENST00000616154 SMIM11BQ8TCY0 68 aa10.99□□□□□ -0.65
CDX1-202ENST00000616154 ZNF73O43830 326 aaPredicted RBP10.98□□□□□ -0.65
CDX1-202ENST00000616154 RETNLBQ9BQ08 111 aa10.98□□□□□ -0.65
CDX1-202ENST00000616154 MUC17Q685J3 4493 aa10.97□□□□□ -0.65
CDX1-202ENST00000616154 FAT4Q6V0I7 4981 aa10.96□□□□□ -0.65
CDX1-202ENST00000616154 TRBV7-6A0A0J9YX20 115 aa10.96□□□□□ -0.65
CDX1-202ENST00000616154 HIGD2AQ9BW72 106 aa10.95□□□□□ -0.66
CDX1-202ENST00000616154 BATFQ16520 125 aa10.94□□□□□ -0.66
CDX1-202ENST00000616154 TPRXLQ17RH7 258 aa10.94□□□□□ -0.66
CDX1-202ENST00000616154 C6orf99Q4VX62 202 aa10.94□□□□□ -0.66
CDX1-202ENST00000616154 SPRR4Q96PI1 79 aa10.94□□□□□ -0.66
CDX1-202ENST00000616154 B5MCH6 92 aa10.93□□□□□ -0.66
CDX1-202ENST00000616154 LCE2AQ5TA79 106 aaPredicted RBP10.93□□□□□ -0.66
CDX1-202ENST00000616154 H7C2G1 150 aa10.91□□□□□ -0.66
CDX1-202ENST00000616154 ELOF1P60002 83 aaKnown RBP10.91□□□□□ -0.66
CDX1-202ENST00000616154 KRTAP9-2Q9BYQ4 174 aa10.91□□□□□ -0.66
CDX1-202ENST00000616154 ZNF706Q9Y5V0 76 aaPredicted RBP10.91□□□□□ -0.66
CDX1-202ENST00000616154 IGLV7-46A0A075B6I9 117 aa10.9□□□□□ -0.66
CDX1-202ENST00000616154 ETDCA0A1B0GVM5 59 aa10.9□□□□□ -0.66
CDX1-202ENST00000616154 Q6ZRX8 168 aa10.9□□□□□ -0.66
CDX1-202ENST00000616154 CDIP1Q9H305 208 aa10.9□□□□□ -0.66
CDX1-202ENST00000616154 SMCR5Q8TEV8 140 aa10.89□□□□□ -0.67
CDX1-202ENST00000616154 TAX1BP3O14907 124 aa10.88□□□□□ -0.67
CDX1-202ENST00000616154 TRIAP1O43715 76 aa10.88□□□□□ -0.67
CDX1-202ENST00000616154 Q1RN00 199 aa10.88□□□□□ -0.67
CDX1-202ENST00000616154 COX7BP24311 80 aa10.87□□□□□ -0.67
CDX1-202ENST00000616154 COL5A1-AS1Q5SY13 56 aa10.87□□□□□ -0.67
CDX1-202ENST00000616154 C3orf22Q8N5N4 141 aa10.87□□□□□ -0.67
CDX1-202ENST00000616154 LINC00483Q53H64 154 aa10.86□□□□□ -0.67
CDX1-202ENST00000616154 Q9BRP9 147 aa10.86□□□□□ -0.67
CDX1-202ENST00000616154 VAMP3Q15836 100 aa10.85□□□□□ -0.67
CDX1-202ENST00000616154 H0YGX0 51 aa10.84□□□□□ -0.67
CDX1-202ENST00000616154 C9orf118A6NHY6 69 aa10.84□□□□□ -0.67
CDX1-202ENST00000616154 SPAG11AQ6PDA7 123 aa10.84□□□□□ -0.67
CDX1-202ENST00000616154 LINC00575Q6W349 94 aa10.83□□□□□ -0.68
CDX1-202ENST00000616154 PSMB2P49721 201 aa10.82□□□□□ -0.68
CDX1-202ENST00000616154 DHRS4-AS1Q9P1J3 65 aa10.82□□□□□ -0.68
CDX1-202ENST00000616154 ERC2-IT1O76042 136 aa10.81□□□□□ -0.68
CDX1-202ENST00000616154 COX6CP09669 75 aa10.81□□□□□ -0.68
CDX1-202ENST00000616154 NAA38Q9BRA0 125 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 194 ms