RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 LOC107984640A0A0U1RRK4 108 aa5.5□□□□□ -1.53
TRIM28-214ENST00000600840 NDUFC2-KCTD14E9PQ53 114 aa5.5□□□□□ -1.53
TRIM28-214ENST00000600840 CHTF8P0CG12 524 aa5.5□□□□□ -1.53
TRIM28-214ENST00000600840 MT1HL1P0DM35 61 aa5.5□□□□□ -1.53
TRIM28-214ENST00000600840 RPL37AP61513 92 aaKnown RBP5.5□□□□□ -1.53
TRIM28-214ENST00000600840 ETDBQ3ZM63 59 aa5.5□□□□□ -1.53
TRIM28-214ENST00000600840 SPACA4Q8TDM5 124 aa5.5□□□□□ -1.53
TRIM28-214ENST00000600840 KRTAP9-2Q9BYQ4 174 aa5.5□□□□□ -1.53
TRIM28-214ENST00000600840 TRBV10-2A0A0K0K1G8 114 aa5.49□□□□□ -1.53
TRIM28-214ENST00000600840 SLC25A20O43772 301 aa5.49□□□□□ -1.53
TRIM28-214ENST00000600840 PCP4P48539 62 aa5.49□□□□□ -1.53
TRIM28-214ENST00000600840 COX17Q14061 63 aa5.49□□□□□ -1.53
TRIM28-214ENST00000600840 C9orf129Q5T035 196 aaKnown RBP5.49□□□□□ -1.53
TRIM28-214ENST00000600840 ADAMTSL4-AS1Q5T5F5 129 aa5.49□□□□□ -1.53
TRIM28-214ENST00000600840 A0A1W2PNN7 141 aa5.48□□□□□ -1.53
TRIM28-214ENST00000600840 RPL13AP40429 203 aaKnown RBP5.48□□□□□ -1.53
TRIM28-214ENST00000600840 ANKRD29Q8N6D5 301 aa5.48□□□□□ -1.53
TRIM28-214ENST00000600840 SIGMAR1Q99720 223 aa5.48□□□□□ -1.53
TRIM28-214ENST00000600840 C9JAW5 83 aa5.47□□□□□ -1.53
TRIM28-214ENST00000600840 LST1O00453 97 aa5.47□□□□□ -1.53
TRIM28-214ENST00000600840 TRIAP1O43715 76 aa5.47□□□□□ -1.53
TRIM28-214ENST00000600840 GAGE2BQ13066 116 aa5.47□□□□□ -1.53
TRIM28-214ENST00000600840 Q8NDZ9 215 aa5.47□□□□□ -1.53
TRIM28-214ENST00000600840 PLAC8Q9NZF1 115 aa5.47□□□□□ -1.53
TRIM28-214ENST00000600840 A0A087WYN8 130 aa5.46□□□□□ -1.54
TRIM28-214ENST00000600840 EIF4EBP3O60516 100 aaPredicted RBP5.46□□□□□ -1.54
TRIM28-214ENST00000600840 TRACP01848 142 aa5.46□□□□□ -1.54
TRIM28-214ENST00000600840 PFN2P35080 140 aa5.46□□□□□ -1.54
TRIM28-214ENST00000600840 SND1-IT1Q9HBX3 110 aa5.46□□□□□ -1.54
TRIM28-214ENST00000600840 IGKV2-24A0A0C4DH68 120 aa5.45□□□□□ -1.54
TRIM28-214ENST00000600840 FAM168BA1KXE4 195 aa5.45□□□□□ -1.54
TRIM28-214ENST00000600840 H7C2G1 150 aa5.45□□□□□ -1.54
TRIM28-214ENST00000600840 SMCPP49901 116 aaPredicted RBP5.45□□□□□ -1.54
TRIM28-214ENST00000600840 GAGE2EQ4V326 116 aa5.45□□□□□ -1.54
TRIM28-214ENST00000600840 XAGE1AQ9HD64 81 aa5.45□□□□□ -1.54
TRIM28-214ENST00000600840 LINC00474Q9P2X8 69 aa5.45□□□□□ -1.54
TRIM28-214ENST00000600840 GAGE2DQ9UEU5 116 aa5.45□□□□□ -1.54
TRIM28-214ENST00000600840 PKIGQ9Y2B9 76 aa5.45□□□□□ -1.54
TRIM28-214ENST00000600840 LRP2P98164 4655 aa5.44□□□□□ -1.54
TRIM28-214ENST00000600840 A0A0U1RRA0 63 aa5.44□□□□□ -1.54
TRIM28-214ENST00000600840 H0YGX0 51 aa5.44□□□□□ -1.54
TRIM28-214ENST00000600840 RPL28P46779 137 aaKnown RBP5.44□□□□□ -1.54
TRIM28-214ENST00000600840 LINC00158P58513 81 aa5.44□□□□□ -1.54
TRIM28-214ENST00000600840 RPL18AQ02543 176 aaKnown RBP5.44□□□□□ -1.54
TRIM28-214ENST00000600840 SOSTDC1Q6X4U4 206 aa5.44□□□□□ -1.54
TRIM28-214ENST00000600840 MIR7-3HGQ8N6C7 128 aa5.44□□□□□ -1.54
TRIM28-214ENST00000600840 IGLV5-37A0A075B6J1 123 aa5.43□□□□□ -1.54
TRIM28-214ENST00000600840 KRTAP9-6A0A140TA67 174 aa5.43□□□□□ -1.54
TRIM28-214ENST00000600840 FAM240AA0A1B0GVK7 77 aa5.43□□□□□ -1.54
TRIM28-214ENST00000600840 NDUFC2O95298 119 aa5.43□□□□□ -1.54
TRIM28-214ENST00000600840 VPREB1P12018 145 aa5.43□□□□□ -1.54
TRIM28-214ENST00000600840 KRTAP11-1Q8IUC1 163 aa5.43□□□□□ -1.54
TRIM28-214ENST00000600840 MTURNQ8N3F0 131 aa5.43□□□□□ -1.54
TRIM28-214ENST00000600840 DAND5Q8N907 189 aa5.43□□□□□ -1.54
TRIM28-214ENST00000600840 DPH3Q96FX2 82 aa5.43□□□□□ -1.54
TRIM28-214ENST00000600840 A0A1B0GX51 115 aa5.42□□□□□ -1.54
TRIM28-214ENST00000600840 SNCGO76070 127 aa5.42□□□□□ -1.54
TRIM28-214ENST00000600840 ACYP1P07311 99 aa5.42□□□□□ -1.54
TRIM28-214ENST00000600840 NPC2P61916 151 aa5.41□□□□□ -1.54
TRIM28-214ENST00000600840 PRR3P79522 188 aaKnown RBP5.4□□□□□ -1.54
TRIM28-214ENST00000600840 C22orf24Q9Y442 160 aa5.4□□□□□ -1.54
TRIM28-214ENST00000600840 H3BQ85 93 aa5.39□□□□□ -1.55
TRIM28-214ENST00000600840 DNAL4O96015 105 aa5.39□□□□□ -1.55
TRIM28-214ENST00000600840 PHF5AQ7RTV0 110 aaKnown RBP5.39□□□□□ -1.55
TRIM28-214ENST00000600840 FAM19A5Q7Z5A7 132 aaPredicted RBP5.38□□□□□ -1.55
TRIM28-214ENST00000600840 C7orf33Q8WU49 177 aa5.38□□□□□ -1.55
TRIM28-214ENST00000600840 LINC00167Q96N53 147 aa5.38□□□□□ -1.55
TRIM28-214ENST00000600840 TMEM126AQ9H061 195 aa5.38□□□□□ -1.55
TRIM28-214ENST00000600840 TNXBP22105 4242 aa5.37□□□□□ -1.55
TRIM28-214ENST00000600840 IGKV2-28A0A075B6P5 120 aa5.37□□□□□ -1.55
TRIM28-214ENST00000600840 IGKV2D-28P01615 120 aa5.37□□□□□ -1.55
TRIM28-214ENST00000600840 C21orf62-AS1Q17RA5 79 aa5.37□□□□□ -1.55
TRIM28-214ENST00000600840 Q6Q795 121 aa5.37□□□□□ -1.55
TRIM28-214ENST00000600840 CLEC2BQ92478 149 aa5.37□□□□□ -1.55
TRIM28-214ENST00000600840 CDIP1Q9H305 208 aa5.37□□□□□ -1.55
TRIM28-214ENST00000600840 IGLV1-50A0A075B6I6 118 aa5.36□□□□□ -1.55
TRIM28-214ENST00000600840 A0A1B0GV72 72 aa5.36□□□□□ -1.55
TRIM28-214ENST00000600840 GHRHP01286 108 aa5.36□□□□□ -1.55
TRIM28-214ENST00000600840 MRPL55Q7Z7F7 128 aaKnown RBP5.36□□□□□ -1.55
TRIM28-214ENST00000600840 LINC00337Q8N6G1 96 aa5.36□□□□□ -1.55
TRIM28-214ENST00000600840 M0R378 163 aa5.35□□□□□ -1.55
TRIM28-214ENST00000600840 BAALC-AS2P0C853 105 aa5.35□□□□□ -1.55
TRIM28-214ENST00000600840 TEX49A0A1B0GTD5 131 aa5.34□□□□□ -1.55
TRIM28-214ENST00000600840 IGLV6-57P01721 117 aa5.34□□□□□ -1.55
TRIM28-214ENST00000600840 OR13C6PQ8NH95 151 aa5.34□□□□□ -1.55
TRIM28-214ENST00000600840 SMIM11BQ8TCY0 68 aa5.34□□□□□ -1.55
TRIM28-214ENST00000600840 PSORS1C2Q9UIG4 136 aa5.34□□□□□ -1.55
TRIM28-214ENST00000600840 SPRR1AP35321 89 aa5.33□□□□□ -1.56
TRIM28-214ENST00000600840 IMUPQ9GZP8 106 aa5.33□□□□□ -1.56
TRIM28-214ENST00000600840 RPL37AP8A6NKH3 93 aa5.32□□□□□ -1.56
TRIM28-214ENST00000600840 KRTAP4-16G5E9R7 235 aaPredicted RBP5.32□□□□□ -1.56
TRIM28-214ENST00000600840 JMJD7-PLA2G4BH0Y9G9 81 aa5.32□□□□□ -1.56
TRIM28-214ENST00000600840 NCR3O14931 201 aa5.32□□□□□ -1.56
TRIM28-214ENST00000600840 KRTAP10-8P60410 259 aa5.32□□□□□ -1.56
TRIM28-214ENST00000600840 KCNQ1DNQ9H478 68 aa5.32□□□□□ -1.56
TRIM28-214ENST00000600840 ORMDL1Q9P0S3 153 aa5.32□□□□□ -1.56
TRIM28-214ENST00000600840 TRBV10-3A0A0K0K1G6 114 aa5.31□□□□□ -1.56
TRIM28-214ENST00000600840 TMEM256-PLSCR3K7ERE1 68 aa5.31□□□□□ -1.56
TRIM28-214ENST00000600840 KRTAP13-1Q8IUC0 172 aa5.31□□□□□ -1.56
TRIM28-214ENST00000600840 NKAPP1Q8N9T2 125 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms