RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 S100A7L2Q5SY68 101 aa11.78□□□□□ -0.52
SS18-218ENST00000581021 TRAV23DV6A0A075B6W5 121 aa11.77□□□□□ -0.53
SS18-218ENST00000581021 C5orf52A6NGY3 159 aa11.77□□□□□ -0.53
SS18-218ENST00000581021 ERC2-IT1O76042 136 aa11.77□□□□□ -0.53
SS18-218ENST00000581021 SCGB1D4Q6XE38 83 aa11.77□□□□□ -0.53
SS18-218ENST00000581021 Q9BRP9 147 aa11.77□□□□□ -0.53
SS18-218ENST00000581021 SPANXDQ9BXN6 97 aa11.77□□□□□ -0.53
SS18-218ENST00000581021 LPAP08519 4548 aa11.76□□□□□ -0.53
SS18-218ENST00000581021 AKR1D1P51857 326 aa11.76□□□□□ -0.53
SS18-218ENST00000581021 Q6ZRX8 168 aa11.75□□□□□ -0.53
SS18-218ENST00000581021 C3orf22Q8N5N4 141 aa11.75□□□□□ -0.53
SS18-218ENST00000581021 S100A12P80511 92 aa11.74□□□□□ -0.53
SS18-218ENST00000581021 ZNF73O43830 326 aaPredicted RBP11.73□□□□□ -0.53
SS18-218ENST00000581021 TSPAN13O95857 204 aa11.72□□□□□ -0.53
SS18-218ENST00000581021 PPDPFQ9H3Y8 114 aa11.71□□□□□ -0.53
SS18-218ENST00000581021 ZNF706Q9Y5V0 76 aaPredicted RBP11.7□□□□□ -0.54
SS18-218ENST00000581021 LINC00483Q53H64 154 aa11.69□□□□□ -0.54
SS18-218ENST00000581021 OR13C6PQ8NH95 151 aa11.69□□□□□ -0.54
SS18-218ENST00000581021 MUSTN1Q8IVN3 82 aa11.68□□□□□ -0.54
SS18-218ENST00000581021 LINC00304Q8N9R0 145 aa11.67□□□□□ -0.54
SS18-218ENST00000581021 SCGB1D1O95968 90 aa11.66□□□□□ -0.54
SS18-218ENST00000581021 IFITM1P13164 125 aa11.66□□□□□ -0.54
SS18-218ENST00000581021 HSBP1L1C9JCN9 74 aa11.65□□□□□ -0.54
SS18-218ENST00000581021 GAGE2AQ6NT46 116 aa11.65□□□□□ -0.54
SS18-218ENST00000581021 Q6ZVH6 145 aa11.65□□□□□ -0.54
SS18-218ENST00000581021 LINC00518Q8N0U6 118 aa11.64□□□□□ -0.55
SS18-218ENST00000581021 ST20-AS1Q8NBB2 130 aa11.63□□□□□ -0.55
SS18-218ENST00000581021 JOSD1Q15040 202 aaPredicted RBP11.61□□□□□ -0.55
SS18-218ENST00000581021 PRR4Q16378 134 aa11.61□□□□□ -0.55
SS18-218ENST00000581021 C6orf99Q4VX62 202 aa11.61□□□□□ -0.55
SS18-218ENST00000581021 COPS9Q8WXC6 57 aa11.6□□□□□ -0.55
SS18-218ENST00000581021 CBY1Q9Y3M2 126 aa11.6□□□□□ -0.55
SS18-218ENST00000581021 ELOF1P60002 83 aaKnown RBP11.59□□□□□ -0.55
SS18-218ENST00000581021 Q8NBF4 154 aa11.58□□□□□ -0.56
SS18-218ENST00000581021 RETNLBQ9BQ08 111 aa11.58□□□□□ -0.56
SS18-218ENST00000581021 A6NDN8 102 aa11.57□□□□□ -0.56
SS18-218ENST00000581021 COX8AP10176 69 aa11.56□□□□□ -0.56
SS18-218ENST00000581021 COX7BP24311 80 aa11.56□□□□□ -0.56
SS18-218ENST00000581021 HINT1P49773 126 aaPredicted RBP11.56□□□□□ -0.56
SS18-218ENST00000581021 IGLV9-49A0A0B4J1Y8 123 aa11.55□□□□□ -0.56
SS18-218ENST00000581021 MOBPQ13875 183 aa11.55□□□□□ -0.56
SS18-218ENST00000581021 A4D1N5 150 aa11.53□□□□□ -0.56
SS18-218ENST00000581021 DHRS4-AS1Q9P1J3 65 aa11.53□□□□□ -0.56
SS18-218ENST00000581021 RNF213Q63HN8 5207 aa11.52□□□□□ -0.57
SS18-218ENST00000581021 PAM16Q9Y3D7 125 aa11.52□□□□□ -0.57
SS18-218ENST00000581021 TRBV7-6A0A0J9YX20 115 aa11.51□□□□□ -0.57
SS18-218ENST00000581021 SMIM11BQ8TCY0 68 aa11.51□□□□□ -0.57
SS18-218ENST00000581021 C14orf144Q96I85 54 aa11.51□□□□□ -0.57
SS18-218ENST00000581021 TRAV13-2A0A0B4J235 113 aa11.5□□□□□ -0.57
SS18-218ENST00000581021 DLEU1O43261 78 aa11.5□□□□□ -0.57
SS18-218ENST00000581021 SPRR1BP22528 89 aa11.5□□□□□ -0.57
SS18-218ENST00000581021 SPAG11AQ6PDA7 123 aa11.5□□□□□ -0.57
SS18-218ENST00000581021 SPATA45Q537H7 98 aa11.49□□□□□ -0.57
SS18-218ENST00000581021 CTAG1AP78358 180 aa11.48□□□□□ -0.57
SS18-218ENST00000581021 A0A1B0GWB2 263 aa11.47□□□□□ -0.57
SS18-218ENST00000581021 C12orf57Q99622 126 aa11.47□□□□□ -0.57
SS18-218ENST00000581021 C2orf91Q6ZV80 131 aa11.46□□□□□ -0.57
SS18-218ENST00000581021 SSBP3-AS1Q7Z2R9 100 aa11.46□□□□□ -0.57
SS18-218ENST00000581021 HIST1H4GQ99525 98 aa11.46□□□□□ -0.57
SS18-218ENST00000581021 VAMP8Q9BV40 100 aa11.46□□□□□ -0.57
SS18-218ENST00000581021 TMA7Q9Y2S6 64 aaKnown RBP11.46□□□□□ -0.57
SS18-218ENST00000581021 C9orf153Q5TBE3 101 aa11.45□□□□□ -0.58
SS18-218ENST00000581021 LINC01547P58512 204 aaPredicted RBP11.44□□□□□ -0.58
SS18-218ENST00000581021 C4orf48Q5BLP8 95 aa11.44□□□□□ -0.58
SS18-218ENST00000581021 PYY3Q5JQD4 70 aa11.44□□□□□ -0.58
SS18-218ENST00000581021 SPINK1P00995 79 aa11.42□□□□□ -0.58
SS18-218ENST00000581021 DEFB105AQ8NG35 78 aa11.42□□□□□ -0.58
SS18-218ENST00000581021 HIGD1BQ9P298 99 aa11.41□□□□□ -0.58
SS18-218ENST00000581021 IGLV5-48A0A075B6I7 105 aa11.4□□□□□ -0.58
SS18-218ENST00000581021 IGLV7-46A0A075B6I9 117 aa11.4□□□□□ -0.58
SS18-218ENST00000581021 SLC25A34Q6PIV7 304 aa11.4□□□□□ -0.58
SS18-218ENST00000581021 Q1RN00 199 aa11.39□□□□□ -0.59
SS18-218ENST00000581021 SMIM29Q86T20 159 aa11.39□□□□□ -0.59
SS18-218ENST00000581021 TEX49A0A1B0GTD5 131 aa11.37□□□□□ -0.59
SS18-218ENST00000581021 TAL2Q16559 108 aa11.37□□□□□ -0.59
SS18-218ENST00000581021 Q8N377 158 aa11.37□□□□□ -0.59
SS18-218ENST00000581021 CFC1BP0CG36 223 aa11.36□□□□□ -0.59
SS18-218ENST00000581021 CFC1P0CG37 223 aa11.36□□□□□ -0.59
SS18-218ENST00000581021 RPS29P62273 56 aaKnown RBP11.36□□□□□ -0.59
SS18-218ENST00000581021 LAMTOR3Q9UHA4 124 aa11.36□□□□□ -0.59
SS18-218ENST00000581021 TPRXLQ17RH7 258 aa11.35□□□□□ -0.59
SS18-218ENST00000581021 LINC00575Q6W349 94 aa11.35□□□□□ -0.59
SS18-218ENST00000581021 FP248Q71RG6 208 aaPredicted RBP11.32□□□□□ -0.6
SS18-218ENST00000581021 NHP2Q9NX24 153 aaKnown RBP11.32□□□□□ -0.6
SS18-218ENST00000581021 VAMP3Q15836 100 aa11.31□□□□□ -0.6
SS18-218ENST00000581021 A0A0G2JQZ4 141 aa11.3□□□□□ -0.6
SS18-218ENST00000581021 H7C2G1 150 aa11.3□□□□□ -0.6
SS18-218ENST00000581021 HRCT1Q6UXD1 115 aa11.3□□□□□ -0.6
SS18-218ENST00000581021 CEND1Q8N111 149 aa11.3□□□□□ -0.6
SS18-218ENST00000581021 A0A0B4J2C4 111 aa11.29□□□□□ -0.6
SS18-218ENST00000581021 FXYD2P54710 66 aa11.29□□□□□ -0.6
SS18-218ENST00000581021 MUC17Q685J3 4493 aa11.29□□□□□ -0.6
SS18-218ENST00000581021 KRTAP13-3Q3SY46 172 aa11.28□□□□□ -0.6
SS18-218ENST00000581021 Q6ZQY7 126 aa11.28□□□□□ -0.6
SS18-218ENST00000581021 MUC2Q02817 5179 aa11.28□□□□□ -0.6
SS18-218ENST00000581021 hADV29S1A0JD25 119 aa11.27□□□□□ -0.61
SS18-218ENST00000581021 SLC25A20O43772 301 aa11.27□□□□□ -0.61
SS18-218ENST00000581021 RAB37Q96AX2 223 aa11.26□□□□□ -0.61
SS18-218ENST00000581021 CDIP1Q9H305 208 aa11.26□□□□□ -0.61
SS18-218ENST00000581021 PRO1933Q9H354 126 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms