RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 IGKV4-1P06312 121 aa7.36□□□□□ -1.23
CLK3-226ENST00000569406 MOBPQ13875 183 aa7.36□□□□□ -1.23
CLK3-226ENST00000569406 Q8N9P0 234 aaPredicted RBP7.36□□□□□ -1.23
CLK3-226ENST00000569406 C4orf3Q8WVX3 66 aa7.35□□□□□ -1.23
CLK3-226ENST00000569406 TENM1Q9UKZ4 2725 aa7.35□□□□□ -1.23
CLK3-226ENST00000569406 PDE6GP18545 87 aa7.35□□□□□ -1.23
CLK3-226ENST00000569406 C9orf116Q5BN46 136 aaPredicted RBP7.35□□□□□ -1.23
CLK3-226ENST00000569406 C10orf25Q5T742 122 aa7.35□□□□□ -1.23
CLK3-226ENST00000569406 IGLV4-60A0A075B6I1 120 aa7.35□□□□□ -1.23
CLK3-226ENST00000569406 HTN3P15516 51 aa7.35□□□□□ -1.23
CLK3-226ENST00000569406 Q6ZQY7 126 aa7.35□□□□□ -1.23
CLK3-226ENST00000569406 ANK2Q01484 3957 aa7.35□□□□□ -1.23
CLK3-226ENST00000569406 LOC100131303A0A0U1RQF7 123 aa7.33□□□□□ -1.24
CLK3-226ENST00000569406 MAP6D1Q9H9H5 199 aa7.33□□□□□ -1.24
CLK3-226ENST00000569406 CDC42SE1Q9NRR8 79 aa7.33□□□□□ -1.24
CLK3-226ENST00000569406 IGLV10-54A0A075B6I4 117 aa7.33□□□□□ -1.24
CLK3-226ENST00000569406 LY6G6DO95868 133 aa7.33□□□□□ -1.24
CLK3-226ENST00000569406 DEFB114Q30KQ6 69 aa7.33□□□□□ -1.24
CLK3-226ENST00000569406 K7EQD1 137 aa7.33□□□□□ -1.24
CLK3-226ENST00000569406 CYP4F30PQ9H0H9 118 aa7.33□□□□□ -1.24
CLK3-226ENST00000569406 DNAJC9-AS1A6NH13 148 aa7.32□□□□□ -1.24
CLK3-226ENST00000569406 ODF3L2Q3SX64 289 aa7.31□□□□□ -1.24
CLK3-226ENST00000569406 LINC00612Q8N6U2 182 aa7.31□□□□□ -1.24
CLK3-226ENST00000569406 WFDC10AQ9H1F0 79 aa7.31□□□□□ -1.24
CLK3-226ENST00000569406 B9D2Q9BPU9 175 aa7.31□□□□□ -1.24
CLK3-226ENST00000569406 LINC00575Q6W349 94 aa7.31□□□□□ -1.24
CLK3-226ENST00000569406 ADM2Q7Z4H4 148 aa7.31□□□□□ -1.24
CLK3-226ENST00000569406 C3orf84H3BNL1 204 aa7.3□□□□□ -1.24
CLK3-226ENST00000569406 GIG44P09565 113 aaPredicted RBP7.3□□□□□ -1.24
CLK3-226ENST00000569406 PLA2G2AP14555 144 aa7.3□□□□□ -1.24
CLK3-226ENST00000569406 MP68P56378 58 aa7.3□□□□□ -1.24
CLK3-226ENST00000569406 ZNF706Q9Y5V0 76 aaPredicted RBP7.3□□□□□ -1.24
CLK3-226ENST00000569406 HIGD2BQ4VC39 106 aa7.29□□□□□ -1.24
CLK3-226ENST00000569406 LINC00208Q96KT6 92 aa7.29□□□□□ -1.24
CLK3-226ENST00000569406 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.29□□□□□ -1.24
CLK3-226ENST00000569406 C9orf66Q5T8R8 295 aa7.29□□□□□ -1.24
CLK3-226ENST00000569406 Q75L30 129 aa7.29□□□□□ -1.24
CLK3-226ENST00000569406 KLK12Q9UKR0 248 aa7.29□□□□□ -1.24
CLK3-226ENST00000569406 IGHV4-28A0A0C4DH34 117 aa7.28□□□□□ -1.24
CLK3-226ENST00000569406 CDC42SE2Q9NRR3 84 aa7.28□□□□□ -1.24
CLK3-226ENST00000569406 ST20-AS1Q8NBB2 130 aa7.28□□□□□ -1.24
CLK3-226ENST00000569406 CMYA5Q8N3K9 4069 aa7.27□□□□□ -1.25
CLK3-226ENST00000569406 DEFB4AO15263 64 aa7.26□□□□□ -1.25
CLK3-226ENST00000569406 C19orf73Q9NVV2 129 aa7.26□□□□□ -1.25
CLK3-226ENST00000569406 NSD1Q96L73 2696 aaPredicted RBP7.25□□□□□ -1.25
CLK3-226ENST00000569406 TEP1Q99973 2627 aaKnown RBP7.25□□□□□ -1.25
CLK3-226ENST00000569406 LOC101927531A0A1B0GV80 90 aa7.24□□□□□ -1.25
CLK3-226ENST00000569406 ETDCA0A1B0GVM5 59 aa7.24□□□□□ -1.25
CLK3-226ENST00000569406 ZCCHC13Q8WW36 166 aaKnown RBP7.24□□□□□ -1.25
CLK3-226ENST00000569406 ANGP03950 147 aaKnown RBP7.24□□□□□ -1.25
CLK3-226ENST00000569406 NDUFB1O75438 58 aa7.24□□□□□ -1.25
CLK3-226ENST00000569406 GYPEP15421 78 aa7.23□□□□□ -1.25
CLK3-226ENST00000569406 KRTAP10-3P60369 221 aa7.23□□□□□ -1.25
CLK3-226ENST00000569406 CASC2Q6XLA1 102 aa7.23□□□□□ -1.25
CLK3-226ENST00000569406 COX7BP24311 80 aa7.23□□□□□ -1.25
CLK3-226ENST00000569406 RETNLBQ9BQ08 111 aa7.23□□□□□ -1.25
CLK3-226ENST00000569406 CSNK1G2-AS1Q8NCQ2 148 aa7.21□□□□□ -1.25
CLK3-226ENST00000569406 SMR3AQ99954 134 aa7.21□□□□□ -1.26
CLK3-226ENST00000569406 HIVEP1P15822 2718 aa7.2□□□□□ -1.26
CLK3-226ENST00000569406 DEFB116Q30KQ4 102 aa7.19□□□□□ -1.26
CLK3-226ENST00000569406 SPAG11AQ6PDA7 123 aa7.19□□□□□ -1.26
CLK3-226ENST00000569406 SPINK7P58062 85 aa7.19□□□□□ -1.26
CLK3-226ENST00000569406 BAHCC1Q9P281 2608 aa7.19□□□□□ -1.26
CLK3-226ENST00000569406 ATRQ13535 2644 aa7.18□□□□□ -1.26
CLK3-226ENST00000569406 IGLV1-51P01701 117 aa7.18□□□□□ -1.26
CLK3-226ENST00000569406 LCE6AA0A183 80 aa7.18□□□□□ -1.26
CLK3-226ENST00000569406 SPAG11BQ08648 103 aa7.17□□□□□ -1.26
CLK3-226ENST00000569406 Q8NAQ8 132 aa7.17□□□□□ -1.26
CLK3-226ENST00000569406 IGHV3OR16-9A0A0B4J2B5 98 aa7.16□□□□□ -1.26
CLK3-226ENST00000569406 C16orf74Q96GX8 76 aa7.16□□□□□ -1.26
CLK3-226ENST00000569406 ELOF1P60002 83 aaKnown RBP7.16□□□□□ -1.26
CLK3-226ENST00000569406 LINC00476Q8WZB0 136 aa7.16□□□□□ -1.26
CLK3-226ENST00000569406 DNAH3Q8TD57 4116 aa7.15□□□□□ -1.26
CLK3-226ENST00000569406 PKD1L1Q8TDX9 2849 aa7.15□□□□□ -1.27
CLK3-226ENST00000569406 XAGE1AQ9HD64 81 aa7.14□□□□□ -1.27
CLK3-226ENST00000569406 LINC00959A0A1B0GUT2 108 aa7.14□□□□□ -1.27
CLK3-226ENST00000569406 Q8NDZ9 215 aa7.14□□□□□ -1.27
CLK3-226ENST00000569406 MAST4O15021 2626 aa7.14□□□□□ -1.27
CLK3-226ENST00000569406 COA5Q86WW8 74 aa7.13□□□□□ -1.27
CLK3-226ENST00000569406 H3BQ85 93 aa7.13□□□□□ -1.27
CLK3-226ENST00000569406 DEFB135Q30KP9 77 aa7.12□□□□□ -1.27
CLK3-226ENST00000569406 J3QKU1 62 aa7.12□□□□□ -1.27
CLK3-226ENST00000569406 REG3AQ06141 175 aa7.12□□□□□ -1.27
CLK3-226ENST00000569406 DEFB105AQ8NG35 78 aa7.11□□□□□ -1.27
CLK3-226ENST00000569406 Q9BRP9 147 aa7.11□□□□□ -1.27
CLK3-226ENST00000569406 FBN1P35555 2871 aaKnown RBP7.11□□□□□ -1.27
CLK3-226ENST00000569406 H0Y9J4 135 aa7.11□□□□□ -1.27
CLK3-226ENST00000569406 WFDC13Q8IUB5 93 aa7.11□□□□□ -1.27
CLK3-226ENST00000569406 CHCHD10Q8WYQ3 142 aaPredicted RBP7.1□□□□□ -1.27
CLK3-226ENST00000569406 A0A0A0MQY5 61 aa7.1□□□□□ -1.27
CLK3-226ENST00000569406 K7EQZ3 153 aa7.1□□□□□ -1.27
CLK3-226ENST00000569406 PLA2G1BP04054 148 aaKnown RBP7.08□□□□□ -1.28
CLK3-226ENST00000569406 A0A0J9YWU9 116 aa7.08□□□□□ -1.28
CLK3-226ENST00000569406 WFDC10BQ8IUB3 73 aa7.08□□□□□ -1.28
CLK3-226ENST00000569406 CMC4P56277 68 aaPredicted RBP7.07□□□□□ -1.28
CLK3-226ENST00000569406 UNQ6190/PRO20217Q6UXQ8 127 aa7.07□□□□□ -1.28
CLK3-226ENST00000569406 PRO0255Q9UI72 69 aa7.07□□□□□ -1.28
CLK3-226ENST00000569406 CSAG1Q6PB30 78 aa7.07□□□□□ -1.28
CLK3-226ENST00000569406 X6R8D5 127 aa7.06□□□□□ -1.28
CLK3-226ENST00000569406 Q8IZM0 81 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms