RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 DEFB4AO15263 64 aa8.94□□□□□ -0.98
CLK3-206ENST00000562078 TRBV6-8A0A0A6YYG3 113 aa8.93□□□□□ -0.98
CLK3-206ENST00000562078 TRAV22A0A0B4J277 110 aa8.93□□□□□ -0.98
CLK3-206ENST00000562078 CLPSL2Q6UWE3 100 aa8.93□□□□□ -0.98
CLK3-206ENST00000562078 Q8IZM0 81 aa8.93□□□□□ -0.98
CLK3-206ENST00000562078 GYPEP15421 78 aa8.92□□□□□ -0.98
CLK3-206ENST00000562078 APOC4P55056 127 aa8.92□□□□□ -0.98
CLK3-206ENST00000562078 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.92□□□□□ -0.98
CLK3-206ENST00000562078 KRTAP10-11P60412 298 aa8.92□□□□□ -0.98
CLK3-206ENST00000562078 MDFIQ99750 246 aa8.91□□□□□ -0.98
CLK3-206ENST00000562078 IGHV4-30-4P0DP06 118 aa8.91□□□□□ -0.98
CLK3-206ENST00000562078 CELA1Q9UNI1 258 aa8.91□□□□□ -0.98
CLK3-206ENST00000562078 IGHV4-28A0A0C4DH34 117 aa8.9□□□□□ -0.98
CLK3-206ENST00000562078 FAM30AQ9NZY2 134 aa8.9□□□□□ -0.98
CLK3-206ENST00000562078 EGFEM1PQ0D2K5 195 aa8.9□□□□□ -0.99
CLK3-206ENST00000562078 LYRM9A8MSI8 78 aa8.89□□□□□ -0.99
CLK3-206ENST00000562078 PRO0255Q9UI72 69 aa8.89□□□□□ -0.99
CLK3-206ENST00000562078 A0A096LPF7 62 aa8.89□□□□□ -0.99
CLK3-206ENST00000562078 C10orf25Q5T742 122 aa8.89□□□□□ -0.99
CLK3-206ENST00000562078 LINC00269Q8N2A0 174 aa8.88□□□□□ -0.99
CLK3-206ENST00000562078 PRB2P02812 416 aaPredicted RBP8.88□□□□□ -0.99
CLK3-206ENST00000562078 A8MUN3 132 aa8.87□□□□□ -0.99
CLK3-206ENST00000562078 PRR4Q16378 134 aa8.87□□□□□ -0.99
CLK3-206ENST00000562078 Q8NAQ8 132 aa8.87□□□□□ -0.99
CLK3-206ENST00000562078 KIAA0087Q14695 138 aa8.86□□□□□ -0.99
CLK3-206ENST00000562078 COX17Q14061 63 aa8.86□□□□□ -0.99
CLK3-206ENST00000562078 SYCNQ0VAF6 134 aa8.85□□□□□ -0.99
CLK3-206ENST00000562078 SMIM29Q86T20 159 aa8.85□□□□□ -0.99
CLK3-206ENST00000562078 RBM12B-AS1Q9P1G2 102 aa8.85□□□□□ -0.99
CLK3-206ENST00000562078 COX7BP24311 80 aa8.85□□□□□ -0.99
CLK3-206ENST00000562078 DNAH3Q8TD57 4116 aa8.85□□□□□ -0.99
CLK3-206ENST00000562078 NOTCH1P46531 2555 aa8.84□□□□□ -0.99
CLK3-206ENST00000562078 IGLV6-57P01721 117 aa8.84□□□□□ -0.99
CLK3-206ENST00000562078 KLK12Q9UKR0 248 aa8.83□□□□□ -1
CLK3-206ENST00000562078 C3orf84H3BNL1 204 aa8.83□□□□□ -1
CLK3-206ENST00000562078 C11orf45Q8TAV5 145 aa8.83□□□□□ -1
CLK3-206ENST00000562078 HTN3P15516 51 aa8.82□□□□□ -1
CLK3-206ENST00000562078 NBEAL1Q6ZS30 2694 aa8.81□□□□□ -1
CLK3-206ENST00000562078 PSCAO43653 123 aa8.81□□□□□ -1
CLK3-206ENST00000562078 IGLV10-54A0A075B6I4 117 aa8.8□□□□□ -1
CLK3-206ENST00000562078 H3BQ85 93 aa8.8□□□□□ -1
CLK3-206ENST00000562078 SPART-AS1P0CW21 52 aa8.8□□□□□ -1
CLK3-206ENST00000562078 KTN1-AS1Q86SY8 53 aa8.8□□□□□ -1
CLK3-206ENST00000562078 Q5VV11 94 aa8.79□□□□□ -1
CLK3-206ENST00000562078 DIRC1Q969H9 104 aa8.79□□□□□ -1
CLK3-206ENST00000562078 LINC00588Q9Y4M8 146 aa8.79□□□□□ -1
CLK3-206ENST00000562078 TENM3Q9P273 2699 aa8.79□□□□□ -1
CLK3-206ENST00000562078 LCE6AA0A183 80 aa8.79□□□□□ -1
CLK3-206ENST00000562078 A0A1B0GUV1 79 aa8.79□□□□□ -1
CLK3-206ENST00000562078 MGAM2Q2M2H8 2515 aa8.78□□□□□ -1
CLK3-206ENST00000562078 ZCCHC13Q8WW36 166 aaKnown RBP8.78□□□□□ -1
CLK3-206ENST00000562078 UNQ6190/PRO20217Q6UXQ8 127 aa8.78□□□□□ -1
CLK3-206ENST00000562078 UBE2BP63146 152 aa8.77□□□□□ -1.01
CLK3-206ENST00000562078 ZNF73O43830 326 aaPredicted RBP8.76□□□□□ -1.01
CLK3-206ENST00000562078 C16orf90A8MZG2 172 aa8.76□□□□□ -1.01
CLK3-206ENST00000562078 HIGD2BQ4VC39 106 aa8.76□□□□□ -1.01
CLK3-206ENST00000562078 SPTSSBQ8NFR3 76 aa8.76□□□□□ -1.01
CLK3-206ENST00000562078 CHCHD10Q8WYQ3 142 aaPredicted RBP8.75□□□□□ -1.01
CLK3-206ENST00000562078 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.75□□□□□ -1.01
CLK3-206ENST00000562078 ANGP03950 147 aaKnown RBP8.75□□□□□ -1.01
CLK3-206ENST00000562078 M0R378 163 aa8.74□□□□□ -1.01
CLK3-206ENST00000562078 CHKB-CPT1BH3BT56 60 aa8.74□□□□□ -1.01
CLK3-206ENST00000562078 K7EIL1 84 aa8.74□□□□□ -1.01
CLK3-206ENST00000562078 ELOF1P60002 83 aaKnown RBP8.74□□□□□ -1.01
CLK3-206ENST00000562078 CYP4F30PQ9H0H9 118 aa8.74□□□□□ -1.01
CLK3-206ENST00000562078 XAGE1AQ9HD64 81 aa8.74□□□□□ -1.01
CLK3-206ENST00000562078 ST20-AS1Q8NBB2 130 aa8.73□□□□□ -1.01
CLK3-206ENST00000562078 H3BS24 57 aa8.73□□□□□ -1.01
CLK3-206ENST00000562078 KPRPQ5T749 579 aaPredicted RBP8.73□□□□□ -1.01
CLK3-206ENST00000562078 REG3AQ06141 175 aa8.72□□□□□ -1.01
CLK3-206ENST00000562078 UBE2AP49459 152 aa8.71□□□□□ -1.02
CLK3-206ENST00000562078 LELP1Q5T871 98 aa8.71□□□□□ -1.02
CLK3-206ENST00000562078 ETDCA0A1B0GVM5 59 aa8.7□□□□□ -1.02
CLK3-206ENST00000562078 HCG22E2RYF7 251 aa8.69□□□□□ -1.02
CLK3-206ENST00000562078 SPAG11BQ08648 103 aa8.69□□□□□ -1.02
CLK3-206ENST00000562078 LCA10Q71F78 164 aa8.68□□□□□ -1.02
CLK3-206ENST00000562078 A0A0J9YWU9 116 aa8.67□□□□□ -1.02
CLK3-206ENST00000562078 PRR15LQ9BU68 103 aa8.67□□□□□ -1.02
CLK3-206ENST00000562078 DNHD1Q96M86 4753 aa8.66□□□□□ -1.02
CLK3-206ENST00000562078 Q8N9P0 234 aaPredicted RBP8.66□□□□□ -1.02
CLK3-206ENST00000562078 DEFB105AQ8NG35 78 aa8.66□□□□□ -1.02
CLK3-206ENST00000562078 LINC00528Q8N1L1 170 aa8.65□□□□□ -1.02
CLK3-206ENST00000562078 A6NN06 94 aa8.64□□□□□ -1.03
CLK3-206ENST00000562078 K7EQZ3 153 aa8.64□□□□□ -1.03
CLK3-206ENST00000562078 B9D2Q9BPU9 175 aa8.64□□□□□ -1.03
CLK3-206ENST00000562078 HUWE1Q7Z6Z7 4374 aaKnown RBP8.64□□□□□ -1.03
CLK3-206ENST00000562078 ATP11AUNQ6ZP68 121 aa8.63□□□□□ -1.03
CLK3-206ENST00000562078 WFDC10BQ8IUB3 73 aa8.63□□□□□ -1.03
CLK3-206ENST00000562078 PRR34Q9NV39 138 aa8.63□□□□□ -1.03
CLK3-206ENST00000562078 DSCR10P59022 87 aa8.62□□□□□ -1.03
CLK3-206ENST00000562078 C6orf48Q9UBA6 75 aa8.62□□□□□ -1.03
CLK3-206ENST00000562078 H3BNG1 76 aa8.62□□□□□ -1.03
CLK3-206ENST00000562078 NDUFS5O43920 106 aa8.62□□□□□ -1.03
CLK3-206ENST00000562078 PHF5AQ7RTV0 110 aaKnown RBP8.61□□□□□ -1.03
CLK3-206ENST00000562078 LIMD2Q9BT23 127 aa8.61□□□□□ -1.03
CLK3-206ENST00000562078 A0A1W2PNM2 257 aa8.61□□□□□ -1.03
CLK3-206ENST00000562078 C8orf87E5RJ46 101 aa8.61□□□□□ -1.03
CLK3-206ENST00000562078 A6NED7 52 aa8.6□□□□□ -1.03
CLK3-206ENST00000562078 DEFB116Q30KQ4 102 aa8.6□□□□□ -1.03
CLK3-206ENST00000562078 DEFB131BA0A096LNP1 70 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms