RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 CDKN2A-AS1Q9UH64 79 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 PKIGQ9Y2B9 76 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 TRBV30A0A0K0K1B3 111 aa1.23□□□□□ -2.21
SCFD1-219ENST00000556413 A8MWL6 223 aa1.23□□□□□ -2.21
SCFD1-219ENST00000556413 M0R378 163 aa1.23□□□□□ -2.21
SCFD1-219ENST00000556413 NUPR1O60356 82 aa1.23□□□□□ -2.21
SCFD1-219ENST00000556413 SRP19P09132 144 aaKnown RBP1.23□□□□□ -2.21
SCFD1-219ENST00000556413 ADCYAP1P18509 176 aa1.23□□□□□ -2.21
SCFD1-219ENST00000556413 IFI27P40305 119 aaPredicted RBP1.23□□□□□ -2.21
SCFD1-219ENST00000556413 ZNF345Q14585 488 aa1.23□□□□□ -2.21
SCFD1-219ENST00000556413 RGS21Q2M5E4 152 aa1.23□□□□□ -2.21
SCFD1-219ENST00000556413 LINC00337Q8N6G1 96 aa1.23□□□□□ -2.21
SCFD1-219ENST00000556413 TMEM141Q96I45 108 aa1.23□□□□□ -2.21
SCFD1-219ENST00000556413 PRELID3AQ96N28 172 aa1.23□□□□□ -2.21
SCFD1-219ENST00000556413 EIF5A2Q9GZV4 153 aaKnown RBP1.23□□□□□ -2.21
SCFD1-219ENST00000556413 SPANXA1Q9NS26 97 aa1.23□□□□□ -2.21
SCFD1-219ENST00000556413 A0A0G2JQZ4 141 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 M0R2T5 61 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 ERC2-IT1O76042 136 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 IGLV6-57P01721 117 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 MRPS36P82909 103 aaKnown RBP1.22□□□□□ -2.21
SCFD1-219ENST00000556413 PMCHL1Q16048 86 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 ASB16-AS1Q495Z4 193 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 TEX261Q6UWH6 196 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 TMEM136Q6ZRR5 245 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 CBLN2Q8IUK8 224 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 COX7B2Q8TF08 81 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 SMIM12Q96EX1 92 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 SPRR4Q96PI1 79 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 TMEM126AQ9H061 195 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 BIN3Q9NQY0 253 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 NAT8BQ9UHF3 227 aa1.22□□□□□ -2.21
SCFD1-219ENST00000556413 A0A1B0GXF2 115 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 SMIM27A0A1W2PRY6 76 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 HMSDA8MTL9 139 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 F8VRH5 84 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 H7C2G1 150 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 NDUFA6P56556 154 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 NPC2P61916 151 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 TMEM241Q24JQ0 296 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 C9orf153Q5TBE3 101 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 Q6Q795 121 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 COX6B2Q6YFQ2 88 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 LINC00299Q6ZSB3 139 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 SLC51BQ86UW2 128 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 Q8IZM0 81 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 PLEKHB2Q96CS7 222 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 AMELXQ99217 191 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 C20orf78Q9BR46 151 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 C2orf88Q9BSF0 95 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 TIMM21Q9BVV7 248 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 GEMIN7Q9H840 131 aaKnown RBP1.21□□□□□ -2.22
SCFD1-219ENST00000556413 SND1-IT1Q9HBX3 110 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 OSTCQ9NRP0 149 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 CYSLTR1Q9Y271 337 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 CHTOPQ9Y3Y2 248 aaKnown RBP1.21□□□□□ -2.22
SCFD1-219ENST00000556413 NEBP20929 6669 aa1.21□□□□□ -2.22
SCFD1-219ENST00000556413 MACF1Q9UPN3 7388 aaKnown RBP1.21□□□□□ -2.22
SCFD1-219ENST00000556413 A0A1B0GVG6 124 aa1.2□□□□□ -2.22
SCFD1-219ENST00000556413 IGIPA6NJ69 53 aa1.2□□□□□ -2.22
SCFD1-219ENST00000556413 TMEM250H0YL14 139 aa1.2□□□□□ -2.22
SCFD1-219ENST00000556413 SMAGPQ0VAQ4 97 aa1.2□□□□□ -2.22
SCFD1-219ENST00000556413 ADM2Q7Z4H4 148 aa1.2□□□□□ -2.22
SCFD1-219ENST00000556413 AKAP14Q86UN6 197 aa1.2□□□□□ -2.22
SCFD1-219ENST00000556413 ORMDL3Q8N138 153 aa1.2□□□□□ -2.22
SCFD1-219ENST00000556413 Q8N8P6 123 aa1.2□□□□□ -2.22
SCFD1-219ENST00000556413 SMCR5Q8TEV8 140 aa1.2□□□□□ -2.22
SCFD1-219ENST00000556413 MAP1LC3AQ9H492 121 aa1.2□□□□□ -2.22
SCFD1-219ENST00000556413 TRBV24-1A0A075B6N3 115 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 TRBV10-3A0A0K0K1G6 114 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 LINC00862A6NCI5 91 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 C11orf86A6NJI1 115 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 F8W036 122 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 SMIM13P0DJ93 91 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 ZNF22P17026 224 aaPredicted RBP1.19□□□□□ -2.22
SCFD1-219ENST00000556413 LINC00158P58513 81 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 HERVK_113P63121 156 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 FAM229BQ4G0N7 80 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 LUZP6Q538Z0 58 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 FAM19A3Q7Z5A8 133 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 BOD1L2Q8IYS8 172 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 TCTE3Q8IZS6 198 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 SCGB3A1Q96QR1 104 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 TP73-AS1Q9UF72 201 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 NAT8Q9UHE5 227 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 MUC12Q9UKN1 5478 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 ERG28Q9UKR5 140 aa1.19□□□□□ -2.22
SCFD1-219ENST00000556413 ETDCA0A1B0GVM5 59 aa1.18□□□□□ -2.22
SCFD1-219ENST00000556413 PPP1R17O96001 155 aa1.18□□□□□ -2.22
SCFD1-219ENST00000556413 TSPEAR-AS2P59090 65 aa1.18□□□□□ -2.22
SCFD1-219ENST00000556413 PMVKQ15126 192 aa1.18□□□□□ -2.22
SCFD1-219ENST00000556413 PDZD11Q5EBL8 140 aa1.18□□□□□ -2.22
SCFD1-219ENST00000556413 MEIG1Q5JSS6 88 aa1.18□□□□□ -2.22
SCFD1-219ENST00000556413 TMEM170BQ5T4T1 132 aa1.18□□□□□ -2.22
SCFD1-219ENST00000556413 FP248Q71RG6 208 aaPredicted RBP1.18□□□□□ -2.22
SCFD1-219ENST00000556413 TOMM6Q96B49 74 aa1.18□□□□□ -2.22
SCFD1-219ENST00000556413 Q9BRP9 147 aa1.18□□□□□ -2.22
SCFD1-219ENST00000556413 CST9LQ9H4G1 147 aa1.18□□□□□ -2.22
SCFD1-219ENST00000556413 TINCRA0A1B0GVN0 87 aa1.17□□□□□ -2.22
SCFD1-219ENST00000556413 S100A8P05109 93 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 203.2 ms