RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 SLC25A34Q6PIV7 304 aa12.36□□□□□ -0.43
HMGA2-211ENST00000545998 LINC00337Q8N6G1 96 aa12.36□□□□□ -0.43
HMGA2-211ENST00000545998 HERC1Q15751 4861 aa12.36□□□□□ -0.43
HMGA2-211ENST00000545998 TRAV23DV6A0A075B6W5 121 aa12.34□□□□□ -0.43
HMGA2-211ENST00000545998 OR13C6PQ8NH95 151 aa12.34□□□□□ -0.43
HMGA2-211ENST00000545998 LINC01600Q96MT4 127 aa12.34□□□□□ -0.43
HMGA2-211ENST00000545998 HIGD1BQ9P298 99 aa12.33□□□□□ -0.44
HMGA2-211ENST00000545998 J3QL48 77 aa12.32□□□□□ -0.44
HMGA2-211ENST00000545998 C2orf91Q6ZV80 131 aa12.32□□□□□ -0.44
HMGA2-211ENST00000545998 ETDCA0A1B0GVM5 59 aa12.31□□□□□ -0.44
HMGA2-211ENST00000545998 HIST1H4GQ99525 98 aa12.31□□□□□ -0.44
HMGA2-211ENST00000545998 KRTAP1-4P0C5Y4 121 aa12.3□□□□□ -0.44
HMGA2-211ENST00000545998 CBY1Q9Y3M2 126 aa12.3□□□□□ -0.44
HMGA2-211ENST00000545998 MT1HL1P0DM35 61 aa12.3□□□□□ -0.44
HMGA2-211ENST00000545998 B5MCH6 92 aa12.29□□□□□ -0.44
HMGA2-211ENST00000545998 ZNF73O43830 326 aaPredicted RBP12.29□□□□□ -0.44
HMGA2-211ENST00000545998 A4D1N5 150 aa12.28□□□□□ -0.44
HMGA2-211ENST00000545998 HIGD2AQ9BW72 106 aa12.26□□□□□ -0.45
HMGA2-211ENST00000545998 TRAV13-2A0A0B4J235 113 aa12.26□□□□□ -0.45
HMGA2-211ENST00000545998 A6NDN8 102 aa12.26□□□□□ -0.45
HMGA2-211ENST00000545998 Q6ZRX8 168 aa12.25□□□□□ -0.45
HMGA2-211ENST00000545998 KRTAP10-8P60410 259 aa12.24□□□□□ -0.45
HMGA2-211ENST00000545998 SMCR5Q8TEV8 140 aa12.24□□□□□ -0.45
HMGA2-211ENST00000545998 Q9BRP9 147 aa12.22□□□□□ -0.45
HMGA2-211ENST00000545998 LOC105371267A0A1B0GV96 52 aa12.22□□□□□ -0.45
HMGA2-211ENST00000545998 SMIM6P0DI80 62 aa12.22□□□□□ -0.45
HMGA2-211ENST00000545998 TAL2Q16559 108 aa12.22□□□□□ -0.45
HMGA2-211ENST00000545998 HINT1P49773 126 aaPredicted RBP12.21□□□□□ -0.46
HMGA2-211ENST00000545998 PRR26Q8N8Z3 221 aa12.21□□□□□ -0.46
HMGA2-211ENST00000545998 C6orf99Q4VX62 202 aa12.2□□□□□ -0.46
HMGA2-211ENST00000545998 C12orf57Q99622 126 aa12.2□□□□□ -0.46
HMGA2-211ENST00000545998 UQCR10Q9UDW1 63 aa12.2□□□□□ -0.46
HMGA2-211ENST00000545998 CEND1Q8N111 149 aa12.18□□□□□ -0.46
HMGA2-211ENST00000545998 ANAPC11Q9NYG5 84 aa12.18□□□□□ -0.46
HMGA2-211ENST00000545998 ERC2-IT1O76042 136 aa12.18□□□□□ -0.46
HMGA2-211ENST00000545998 ELOF1P60002 83 aaKnown RBP12.17□□□□□ -0.46
HMGA2-211ENST00000545998 SMIM11BQ8TCY0 68 aa12.17□□□□□ -0.46
HMGA2-211ENST00000545998 SPRR4Q96PI1 79 aa12.17□□□□□ -0.46
HMGA2-211ENST00000545998 A0A087X002 238 aa12.16□□□□□ -0.46
HMGA2-211ENST00000545998 CFC1BP0CG36 223 aa12.16□□□□□ -0.46
HMGA2-211ENST00000545998 CFC1P0CG37 223 aa12.16□□□□□ -0.46
HMGA2-211ENST00000545998 TRBV7-6A0A0J9YX20 115 aa12.15□□□□□ -0.46
HMGA2-211ENST00000545998 COX7BP24311 80 aa12.15□□□□□ -0.46
HMGA2-211ENST00000545998 FAM229BQ4G0N7 80 aa12.15□□□□□ -0.46
HMGA2-211ENST00000545998 ZNF706Q9Y5V0 76 aaPredicted RBP12.15□□□□□ -0.46
HMGA2-211ENST00000545998 RPL13AP40429 203 aaKnown RBP12.14□□□□□ -0.47
HMGA2-211ENST00000545998 CRYGAP11844 174 aa12.13□□□□□ -0.47
HMGA2-211ENST00000545998 HSD52Q0P140 79 aa12.13□□□□□ -0.47
HMGA2-211ENST00000545998 A0A1B0GWB2 263 aa12.12□□□□□ -0.47
HMGA2-211ENST00000545998 FXYD2P54710 66 aa12.12□□□□□ -0.47
HMGA2-211ENST00000545998 PRO1933Q9H354 126 aa12.12□□□□□ -0.47
HMGA2-211ENST00000545998 DHRS4-AS1Q9P1J3 65 aa12.12□□□□□ -0.47
HMGA2-211ENST00000545998 A0A0B4J2C4 111 aa12.11□□□□□ -0.47
HMGA2-211ENST00000545998 TMEM238LA0A1B0GVL6 79 aa12.1□□□□□ -0.47
HMGA2-211ENST00000545998 A6NJY4 79 aa12.1□□□□□ -0.47
HMGA2-211ENST00000545998 KRTAP13-2Q52LG2 175 aa12.09□□□□□ -0.47
HMGA2-211ENST00000545998 RAB37Q96AX2 223 aa12.09□□□□□ -0.47
HMGA2-211ENST00000545998 LINC00483Q53H64 154 aa12.09□□□□□ -0.47
HMGA2-211ENST00000545998 GAGE2AQ6NT46 116 aa12.06□□□□□ -0.48
HMGA2-211ENST00000545998 ST20-AS1Q8NBB2 130 aa12.06□□□□□ -0.48
HMGA2-211ENST00000545998 TYMSOSQ8TAI1 123 aa12.05□□□□□ -0.48
HMGA2-211ENST00000545998 VAMP3Q15836 100 aa12.05□□□□□ -0.48
HMGA2-211ENST00000545998 H7C2G1 150 aa12.04□□□□□ -0.48
HMGA2-211ENST00000545998 PRO1854Q9UHT4 67 aa12.04□□□□□ -0.48
HMGA2-211ENST00000545998 C3orf22Q8N5N4 141 aa12.02□□□□□ -0.49
HMGA2-211ENST00000545998 NHP2Q9NX24 153 aaKnown RBP12.01□□□□□ -0.49
HMGA2-211ENST00000545998 BVES-AS1Q5T3Y7 98 aa12.01□□□□□ -0.49
HMGA2-211ENST00000545998 LINC00575Q6W349 94 aa12□□□□□ -0.49
HMGA2-211ENST00000545998 HMCN2Q8NDA2 5059 aa11.99□□□□□ -0.49
HMGA2-211ENST00000545998 SPRR1BP22528 89 aa11.98□□□□□ -0.49
HMGA2-211ENST00000545998 TSTD3H0UI37 97 aa11.97□□□□□ -0.49
HMGA2-211ENST00000545998 K7ERJ3 54 aa11.97□□□□□ -0.49
HMGA2-211ENST00000545998 SLC25A20O43772 301 aa11.96□□□□□ -0.49
HMGA2-211ENST00000545998 CTAG1AP78358 180 aa11.96□□□□□ -0.49
HMGA2-211ENST00000545998 Q1RN00 199 aa11.96□□□□□ -0.49
HMGA2-211ENST00000545998 hADV29S1A0JD25 119 aa11.94□□□□□ -0.5
HMGA2-211ENST00000545998 LINC01547P58512 204 aaPredicted RBP11.94□□□□□ -0.5
HMGA2-211ENST00000545998 DEFB105AQ8NG35 78 aa11.94□□□□□ -0.5
HMGA2-211ENST00000545998 IGLV9-49A0A0B4J1Y8 123 aa11.93□□□□□ -0.5
HMGA2-211ENST00000545998 IGLV5-48A0A075B6I7 105 aa11.92□□□□□ -0.5
HMGA2-211ENST00000545998 TEX49A0A1B0GTD5 131 aa11.92□□□□□ -0.5
HMGA2-211ENST00000545998 LINC00304Q8N9R0 145 aa11.92□□□□□ -0.5
HMGA2-211ENST00000545998 H0YGX0 51 aa11.91□□□□□ -0.5
HMGA2-211ENST00000545998 MOBPQ13875 183 aa11.91□□□□□ -0.5
HMGA2-211ENST00000545998 M0R143 59 aa11.9□□□□□ -0.5
HMGA2-211ENST00000545998 TRIAP1O43715 76 aa11.9□□□□□ -0.5
HMGA2-211ENST00000545998 TSPAN13O95857 204 aa11.88□□□□□ -0.51
HMGA2-211ENST00000545998 Q6ZQY7 126 aa11.88□□□□□ -0.51
HMGA2-211ENST00000545998 SSBP3-AS1Q7Z2R9 100 aa11.88□□□□□ -0.51
HMGA2-211ENST00000545998 Q8NBF4 154 aa11.88□□□□□ -0.51
HMGA2-211ENST00000545998 Q8N377 158 aa11.88□□□□□ -0.51
HMGA2-211ENST00000545998 FAM218AQ96MZ4 157 aa11.88□□□□□ -0.51
HMGA2-211ENST00000545998 LAMTOR3Q9UHA4 124 aa11.88□□□□□ -0.51
HMGA2-211ENST00000545998 C9orf153Q5TBE3 101 aa11.87□□□□□ -0.51
HMGA2-211ENST00000545998 SMIM29Q86T20 159 aa11.87□□□□□ -0.51
HMGA2-211ENST00000545998 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.86□□□□□ -0.51
HMGA2-211ENST00000545998 PSMB2P49721 201 aa11.84□□□□□ -0.51
HMGA2-211ENST00000545998 SPAG11AQ6PDA7 123 aa11.84□□□□□ -0.51
HMGA2-211ENST00000545998 SNCGO76070 127 aa11.82□□□□□ -0.52
HMGA2-211ENST00000545998 A0A1B0GX51 115 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 123.2 ms