RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 C10orf82Q8WW14 230 aa0.51□□□□□ -2.33
CD44-234ENST00000531873 LCN9Q8WX39 176 aa0.51□□□□□ -2.33
CD44-234ENST00000531873 SPRR2FQ96RM1 72 aa0.51□□□□□ -2.33
CD44-234ENST00000531873 TSC22D3Q99576 134 aa0.51□□□□□ -2.33
CD44-234ENST00000531873 LPAP08519 4548 aa0.51□□□□□ -2.33
CD44-234ENST00000531873 DNAH17Q9UFH2 4485 aa0.5□□□□□ -2.33
CD44-234ENST00000531873 MYH8P13535 1937 aa0.5□□□□□ -2.33
CD44-234ENST00000531873 FAM92AA1XBS5 289 aa0.5□□□□□ -2.33
CD44-234ENST00000531873 ATP6V1G2-DDX39BF2Z307 99 aa0.5□□□□□ -2.33
CD44-234ENST00000531873 H3BUX3 64 aa0.5□□□□□ -2.33
CD44-234ENST00000531873 HIST1H1DP16402 221 aaKnown RBP0.5□□□□□ -2.33
CD44-234ENST00000531873 PPP1R1CQ8WVI7 109 aa0.5□□□□□ -2.33
CD44-234ENST00000531873 ARL11Q969Q4 196 aa0.5□□□□□ -2.33
CD44-234ENST00000531873 COX14Q96I36 57 aa0.5□□□□□ -2.33
CD44-234ENST00000531873 DSCR8Q96T75 97 aa0.5□□□□□ -2.33
CD44-234ENST00000531873 SEC11CQ9BY50 192 aa0.5□□□□□ -2.33
CD44-234ENST00000531873 CCDC167Q9P0B6 97 aa0.5□□□□□ -2.33
CD44-234ENST00000531873 DEFB131BA0A096LNP1 70 aa0.49□□□□□ -2.33
CD44-234ENST00000531873 NDUFB6O95139 128 aa0.49□□□□□ -2.33
CD44-234ENST00000531873 CCL18P55774 89 aa0.49□□□□□ -2.33
CD44-234ENST00000531873 SSBP1Q04837 148 aaKnown RBP0.49□□□□□ -2.33
CD44-234ENST00000531873 COX7B2Q8TF08 81 aa0.49□□□□□ -2.33
CD44-234ENST00000531873 SPTSSAQ969W0 71 aa0.49□□□□□ -2.33
CD44-234ENST00000531873 Q96NJ1 140 aa0.49□□□□□ -2.33
CD44-234ENST00000531873 RPRMQ9NS64 109 aa0.49□□□□□ -2.33
CD44-234ENST00000531873 MUC17Q685J3 4493 aa0.49□□□□□ -2.33
CD44-234ENST00000531873 TNXBP22105 4242 aa0.48□□□□□ -2.33
CD44-234ENST00000531873 RBAKDNA6NC62 111 aa0.48□□□□□ -2.33
CD44-234ENST00000531873 PIPP12273 146 aaPredicted RBP0.48□□□□□ -2.33
CD44-234ENST00000531873 CBLN1P23435 193 aa0.48□□□□□ -2.33
CD44-234ENST00000531873 SPINK7P58062 85 aa0.48□□□□□ -2.33
CD44-234ENST00000531873 CCL8P80075 99 aa0.48□□□□□ -2.33
CD44-234ENST00000531873 SARNPP82979 210 aaKnown RBP0.48□□□□□ -2.33
CD44-234ENST00000531873 DEFB135Q30KP9 77 aa0.48□□□□□ -2.33
CD44-234ENST00000531873 S100A7L2Q5SY68 101 aa0.48□□□□□ -2.33
CD44-234ENST00000531873 C4orf33Q8N1A6 199 aa0.48□□□□□ -2.33
CD44-234ENST00000531873 AGPAT4-IT1Q9H0P7 198 aa0.48□□□□□ -2.33
CD44-234ENST00000531873 LOC100130705A0A1B0GUX0 176 aa0.47□□□□□ -2.33
CD44-234ENST00000531873 A6NIN4 97 aa0.47□□□□□ -2.33
CD44-234ENST00000531873 SNCGO76070 127 aa0.47□□□□□ -2.33
CD44-234ENST00000531873 UBE2D1P51668 147 aa0.47□□□□□ -2.33
CD44-234ENST00000531873 DEFB136Q30KP8 78 aa0.47□□□□□ -2.33
CD44-234ENST00000531873 MEIG1Q5JSS6 88 aa0.47□□□□□ -2.33
CD44-234ENST00000531873 LSM10Q969L4 123 aaKnown RBP0.47□□□□□ -2.33
CD44-234ENST00000531873 PDCD10Q9BUL8 212 aa0.47□□□□□ -2.33
CD44-234ENST00000531873 SNRNP25Q9BV90 132 aaKnown RBP0.47□□□□□ -2.33
CD44-234ENST00000531873 DEFB4AO15263 64 aa0.46□□□□□ -2.34
CD44-234ENST00000531873 PRH1P02810 166 aa0.46□□□□□ -2.34
CD44-234ENST00000531873 RPL7L1Q6DKI1 246 aaKnown RBP0.46□□□□□ -2.34
CD44-234ENST00000531873 VMO1Q7Z5L0 202 aa0.46□□□□□ -2.34
CD44-234ENST00000531873 SPTSSBQ8NFR3 76 aa0.46□□□□□ -2.34
CD44-234ENST00000531873 PLAC8Q9NZF1 115 aa0.46□□□□□ -2.34
CD44-234ENST00000531873 DNAH8Q96JB1 4490 aa0.45□□□□□ -2.34
CD44-234ENST00000531873 GVQW2A0A096LPI5 108 aaPredicted RBP0.45□□□□□ -2.34
CD44-234ENST00000531873 TRBV7-1A0A0A6YYK4 115 aa0.45□□□□□ -2.34
CD44-234ENST00000531873 EFCAB10A6NFE3 127 aa0.45□□□□□ -2.34
CD44-234ENST00000531873 FAM25AB3EWG3 89 aa0.45□□□□□ -2.34
CD44-234ENST00000531873 FAM25CB3EWG5 89 aa0.45□□□□□ -2.34
CD44-234ENST00000531873 FAM25GB3EWG6 89 aa0.45□□□□□ -2.34
CD44-234ENST00000531873 HTN3P15516 51 aa0.45□□□□□ -2.34
CD44-234ENST00000531873 RBM3P98179 157 aaKnown RBP0.45□□□□□ -2.34
CD44-234ENST00000531873 SPINK6Q6UWN8 80 aa0.45□□□□□ -2.34
CD44-234ENST00000531873 C1orf54Q8WWF1 131 aa0.45□□□□□ -2.34
CD44-234ENST00000531873 TSLPQ969D9 159 aa0.45□□□□□ -2.34
CD44-234ENST00000531873 RERGLQ9H628 205 aa0.45□□□□□ -2.34
CD44-234ENST00000531873 V9GYV3 84 aa0.45□□□□□ -2.34
CD44-234ENST00000531873 MCRIP1C9JLW8 97 aa0.44□□□□□ -2.34
CD44-234ENST00000531873 H0YGG7 62 aa0.44□□□□□ -2.34
CD44-234ENST00000531873 MRPL33O75394 65 aaKnown RBP0.44□□□□□ -2.34
CD44-234ENST00000531873 EDDM3BP56851 147 aa0.44□□□□□ -2.34
CD44-234ENST00000531873 BTG2P78543 158 aa0.44□□□□□ -2.34
CD44-234ENST00000531873 FAM74A4Q5TZK3 123 aa0.44□□□□□ -2.34
CD44-234ENST00000531873 RPL13AP3Q6NVV1 102 aa0.44□□□□□ -2.34
CD44-234ENST00000531873 TRGV1A0A0A0MS02 117 aa0.43□□□□□ -2.34
CD44-234ENST00000531873 A0A1B0GV90 55 aa0.43□□□□□ -2.34
CD44-234ENST00000531873 SPART-AS1P0CW21 52 aa0.43□□□□□ -2.34
CD44-234ENST00000531873 TDRG1Q3Y452 100 aa0.43□□□□□ -2.34
CD44-234ENST00000531873 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.43□□□□□ -2.34
CD44-234ENST00000531873 ZNF818PQ6ZRF7 136 aa0.43□□□□□ -2.34
CD44-234ENST00000531873 KRTAP8-1Q8IUC2 63 aa0.43□□□□□ -2.34
CD44-234ENST00000531873 Q8N8P6 123 aa0.43□□□□□ -2.34
CD44-234ENST00000531873 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.43□□□□□ -2.34
CD44-234ENST00000531873 PROK2Q9HC23 129 aa0.43□□□□□ -2.34
CD44-234ENST00000531873 LINC00312Q9Y6C7 94 aa0.43□□□□□ -2.34
CD44-234ENST00000531873 SERP1Q9Y6X1 66 aa0.43□□□□□ -2.34
CD44-234ENST00000531873 TRBV10-3A0A0K0K1G6 114 aa0.42□□□□□ -2.34
CD44-234ENST00000531873 PHGR1C9JFL3 82 aa0.42□□□□□ -2.34
CD44-234ENST00000531873 HCG22E2RYF7 251 aa0.42□□□□□ -2.34
CD44-234ENST00000531873 F2Z2F3 143 aa0.42□□□□□ -2.34
CD44-234ENST00000531873 Q6AWC8 147 aa0.42□□□□□ -2.34
CD44-234ENST00000531873 SMIM11BQ8TCY0 68 aa0.42□□□□□ -2.34
CD44-234ENST00000531873 COPS9Q8WXC6 57 aa0.42□□□□□ -2.34
CD44-234ENST00000531873 WFDC6Q9BQY6 131 aa0.42□□□□□ -2.34
CD44-234ENST00000531873 MYH4Q9Y623 1939 aa0.42□□□□□ -2.34
CD44-234ENST00000531873 DLEU1O43261 78 aa0.41□□□□□ -2.34
CD44-234ENST00000531873 SIX6O95475 246 aa0.41□□□□□ -2.34
CD44-234ENST00000531873 FGF7P21781 194 aa0.41□□□□□ -2.34
CD44-234ENST00000531873 KRTAP21-1Q3LI58 79 aa0.41□□□□□ -2.34
CD44-234ENST00000531873 NAA60Q9H7X0 242 aa0.41□□□□□ -2.34
CD44-234ENST00000531873 HILPDAQ9Y5L2 63 aa0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 126.7 ms