RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 TMEM238C9JI98 176 aa8.17□□□□□ -1.1
CPSF1-201ENST00000526271 SLC25A34Q6PIV7 304 aa8.17□□□□□ -1.1
CPSF1-201ENST00000526271 Q6ZVH6 145 aa8.17□□□□□ -1.1
CPSF1-201ENST00000526271 EIF4EBP3O60516 100 aaPredicted RBP8.16□□□□□ -1.1
CPSF1-201ENST00000526271 VPREB1P12018 145 aa8.16□□□□□ -1.1
CPSF1-201ENST00000526271 FAM229BQ4G0N7 80 aa8.16□□□□□ -1.1
CPSF1-201ENST00000526271 SOSTDC1Q6X4U4 206 aa8.16□□□□□ -1.1
CPSF1-201ENST00000526271 C3orf22Q8N5N4 141 aa8.16□□□□□ -1.1
CPSF1-201ENST00000526271 LINC00308Q8TCZ7 52 aa8.16□□□□□ -1.1
CPSF1-201ENST00000526271 PPDPFQ9H3Y8 114 aa8.16□□□□□ -1.1
CPSF1-201ENST00000526271 SPANXB1Q9NS25 103 aaPredicted RBP8.16□□□□□ -1.1
CPSF1-201ENST00000526271 IGLV7-46A0A075B6I9 117 aa8.15□□□□□ -1.1
CPSF1-201ENST00000526271 PRLHP81277 87 aa8.15□□□□□ -1.1
CPSF1-201ENST00000526271 RPL24P83731 157 aaKnown RBP8.15□□□□□ -1.1
CPSF1-201ENST00000526271 HIGD1BQ9P298 99 aa8.15□□□□□ -1.1
CPSF1-201ENST00000526271 IFITM1P13164 125 aa8.14□□□□□ -1.11
CPSF1-201ENST00000526271 UBE2AP49459 152 aa8.14□□□□□ -1.11
CPSF1-201ENST00000526271 C2orf91Q6ZV80 131 aa8.14□□□□□ -1.11
CPSF1-201ENST00000526271 CDIP1Q9H305 208 aa8.14□□□□□ -1.11
CPSF1-201ENST00000526271 IGKV2-28A0A075B6P5 120 aa8.13□□□□□ -1.11
CPSF1-201ENST00000526271 NDUFC2O95298 119 aa8.13□□□□□ -1.11
CPSF1-201ENST00000526271 IGKV2D-28P01615 120 aa8.13□□□□□ -1.11
CPSF1-201ENST00000526271 NPC2P61916 151 aa8.13□□□□□ -1.11
CPSF1-201ENST00000526271 MUSTN1Q8IVN3 82 aa8.12□□□□□ -1.11
CPSF1-201ENST00000526271 COPS9Q8WXC6 57 aa8.12□□□□□ -1.11
CPSF1-201ENST00000526271 C12orf57Q99622 126 aa8.12□□□□□ -1.11
CPSF1-201ENST00000526271 MIEN1Q9BRT3 115 aa8.12□□□□□ -1.11
CPSF1-201ENST00000526271 LINC00518Q8N0U6 118 aa8.11□□□□□ -1.11
CPSF1-201ENST00000526271 UQCR10Q9UDW1 63 aa8.11□□□□□ -1.11
CPSF1-201ENST00000526271 FSIP2Q5CZC0 6907 aa8.1□□□□□ -1.11
CPSF1-201ENST00000526271 M0R378 163 aa8.1□□□□□ -1.11
CPSF1-201ENST00000526271 TRBV10-2A0A0K0K1G8 114 aa8.09□□□□□ -1.11
CPSF1-201ENST00000526271 LCE2DQ5TA82 110 aaPredicted RBP8.09□□□□□ -1.11
CPSF1-201ENST00000526271 TMEM126AQ9H061 195 aa8.09□□□□□ -1.11
CPSF1-201ENST00000526271 TAL2Q16559 108 aa8.08□□□□□ -1.12
CPSF1-201ENST00000526271 KRTAP13-3Q3SY46 172 aa8.08□□□□□ -1.12
CPSF1-201ENST00000526271 HIST1H4GQ99525 98 aa8.08□□□□□ -1.12
CPSF1-201ENST00000526271 PRO1933Q9H354 126 aa8.08□□□□□ -1.12
CPSF1-201ENST00000526271 NCR3O14931 201 aa8.06□□□□□ -1.12
CPSF1-201ENST00000526271 FAM19A1Q7Z5A9 133 aa8.06□□□□□ -1.12
CPSF1-201ENST00000526271 A4D1N5 150 aa8.04□□□□□ -1.12
CPSF1-201ENST00000526271 IGLV6-57P01721 117 aa8.04□□□□□ -1.12
CPSF1-201ENST00000526271 CTAG1AP78358 180 aa8.04□□□□□ -1.12
CPSF1-201ENST00000526271 ASB16-AS1Q495Z4 193 aa8.04□□□□□ -1.12
CPSF1-201ENST00000526271 LCE2CQ5TA81 110 aa8.04□□□□□ -1.12
CPSF1-201ENST00000526271 CEND1Q8N111 149 aa8.04□□□□□ -1.12
CPSF1-201ENST00000526271 LINC00337Q8N6G1 96 aa8.03□□□□□ -1.12
CPSF1-201ENST00000526271 SPRR4Q96PI1 79 aa8.03□□□□□ -1.12
CPSF1-201ENST00000526271 TRBV10-3A0A0K0K1G6 114 aa8.02□□□□□ -1.13
CPSF1-201ENST00000526271 TSTD3H0UI37 97 aa8.02□□□□□ -1.13
CPSF1-201ENST00000526271 DDTP30046 118 aa8.02□□□□□ -1.13
CPSF1-201ENST00000526271 HSD52Q0P140 79 aa8.02□□□□□ -1.13
CPSF1-201ENST00000526271 KRTAP19-2Q3LHN2 52 aa8.02□□□□□ -1.13
CPSF1-201ENST00000526271 KCNQ1DNQ9H478 68 aa8.02□□□□□ -1.13
CPSF1-201ENST00000526271 S100A7L2Q5SY68 101 aa8.01□□□□□ -1.13
CPSF1-201ENST00000526271 CRCT1Q9UGL9 99 aa8.01□□□□□ -1.13
CPSF1-201ENST00000526271 TRAV13-2A0A0B4J235 113 aa7.99□□□□□ -1.13
CPSF1-201ENST00000526271 PRYO14603 147 aa7.99□□□□□ -1.13
CPSF1-201ENST00000526271 CFC1BP0CG36 223 aa7.99□□□□□ -1.13
CPSF1-201ENST00000526271 CFC1P0CG37 223 aa7.99□□□□□ -1.13
CPSF1-201ENST00000526271 SPRR1AP35321 89 aa7.99□□□□□ -1.13
CPSF1-201ENST00000526271 FP248Q71RG6 208 aaPredicted RBP7.99□□□□□ -1.13
CPSF1-201ENST00000526271 HIGD2AQ9BW72 106 aa7.99□□□□□ -1.13
CPSF1-201ENST00000526271 FXYD2P54710 66 aa7.98□□□□□ -1.13
CPSF1-201ENST00000526271 OR13C6PQ8NH95 151 aa7.98□□□□□ -1.13
CPSF1-201ENST00000526271 A6NDN8 102 aa7.97□□□□□ -1.13
CPSF1-201ENST00000526271 KRTAP4-16G5E9R7 235 aaPredicted RBP7.97□□□□□ -1.13
CPSF1-201ENST00000526271 Q8NBF4 154 aa7.97□□□□□ -1.13
CPSF1-201ENST00000526271 CBY1Q9Y3M2 126 aa7.97□□□□□ -1.13
CPSF1-201ENST00000526271 ZNF706Q9Y5V0 76 aaPredicted RBP7.97□□□□□ -1.13
CPSF1-201ENST00000526271 TRAV23DV6A0A075B6W5 121 aa7.96□□□□□ -1.14
CPSF1-201ENST00000526271 A0A0B4J2C4 111 aa7.96□□□□□ -1.14
CPSF1-201ENST00000526271 TMEM238LA0A1B0GVL6 79 aa7.96□□□□□ -1.14
CPSF1-201ENST00000526271 A6NJY4 79 aa7.96□□□□□ -1.14
CPSF1-201ENST00000526271 BVES-AS1Q5T3Y7 98 aa7.96□□□□□ -1.14
CPSF1-201ENST00000526271 SPAG11AQ6PDA7 123 aa7.96□□□□□ -1.14
CPSF1-201ENST00000526271 A0A1B0GWB2 263 aa7.94□□□□□ -1.14
CPSF1-201ENST00000526271 ZNF73O43830 326 aaPredicted RBP7.94□□□□□ -1.14
CPSF1-201ENST00000526271 LINC01547P58512 204 aaPredicted RBP7.93□□□□□ -1.14
CPSF1-201ENST00000526271 C4orf48Q5BLP8 95 aa7.93□□□□□ -1.14
CPSF1-201ENST00000526271 SMCR5Q8TEV8 140 aa7.93□□□□□ -1.14
CPSF1-201ENST00000526271 RAB37Q96AX2 223 aa7.93□□□□□ -1.14
CPSF1-201ENST00000526271 ETDCA0A1B0GVM5 59 aa7.92□□□□□ -1.14
CPSF1-201ENST00000526271 B5MCH6 92 aa7.92□□□□□ -1.14
CPSF1-201ENST00000526271 SMIM11BQ8TCY0 68 aa7.92□□□□□ -1.14
CPSF1-201ENST00000526271 PRO1854Q9UHT4 67 aa7.92□□□□□ -1.14
CPSF1-201ENST00000526271 M0R143 59 aa7.91□□□□□ -1.14
CPSF1-201ENST00000526271 HINT1P49773 126 aaPredicted RBP7.91□□□□□ -1.14
CPSF1-201ENST00000526271 LINC00483Q53H64 154 aa7.91□□□□□ -1.14
CPSF1-201ENST00000526271 NHP2Q9NX24 153 aaKnown RBP7.91□□□□□ -1.14
CPSF1-201ENST00000526271 TRBV7-6A0A0J9YX20 115 aa7.9□□□□□ -1.14
CPSF1-201ENST00000526271 ERC2-IT1O76042 136 aa7.9□□□□□ -1.14
CPSF1-201ENST00000526271 C6orf99Q4VX62 202 aa7.9□□□□□ -1.14
CPSF1-201ENST00000526271 Q8N377 158 aa7.9□□□□□ -1.14
CPSF1-201ENST00000526271 MT1HP80294 61 aa7.89□□□□□ -1.15
CPSF1-201ENST00000526271 XP32Q5T750 250 aa7.89□□□□□ -1.15
CPSF1-201ENST00000526271 Q6ZRX8 168 aa7.88□□□□□ -1.15
CPSF1-201ENST00000526271 K7ERJ3 54 aa7.87□□□□□ -1.15
CPSF1-201ENST00000526271 ELOF1P60002 83 aaKnown RBP7.87□□□□□ -1.15
CPSF1-201ENST00000526271 SPINK1P00995 79 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 128.3 ms