RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	TRAV23DV6	A0A075B6W5	121 aa		12.58	□□□□□ -0.4
CD44-222	ENST00000526025	KRTAP29-1	A8MX34	341 aa	Predicted RBP	12.58	□□□□□ -0.4
CD44-222	ENST00000526025	FAT3	Q8TDW7	4589 aa		12.58	□□□□□ -0.4
CD44-222	ENST00000526025	LOC105371267	A0A1B0GV96	52 aa		12.57	□□□□□ -0.4
CD44-222	ENST00000526025	TAL2	Q16559	108 aa		12.57	□□□□□ -0.4
CD44-222	ENST00000526025	OR13C6P	Q8NH95	151 aa		12.56	□□□□□ -0.4
CD44-222	ENST00000526025	TRAV13-2	A0A0B4J235	113 aa		12.55	□□□□□ -0.4
CD44-222	ENST00000526025	ETDC	A0A1B0GVM5	59 aa		12.55	□□□□□ -0.4
CD44-222	ENST00000526025		A4D1N5	150 aa		12.55	□□□□□ -0.4
CD44-222	ENST00000526025	UQCR10	Q9UDW1	63 aa		12.55	□□□□□ -0.4
CD44-222	ENST00000526025	LRP1	Q07954	4544 aa	Known RBP	12.55	□□□□□ -0.4
CD44-222	ENST00000526025	ZNF73	O43830	326 aa	Predicted RBP	12.54	□□□□□ -0.4
CD44-222	ENST00000526025	PRLH	P81277	87 aa		12.54	□□□□□ -0.4
CD44-222	ENST00000526025		B5MCH6	92 aa		12.51	□□□□□ -0.41
CD44-222	ENST00000526025	LINC01600	Q96MT4	127 aa		12.51	□□□□□ -0.41
CD44-222	ENST00000526025		A6NDN8	102 aa		12.5	□□□□□ -0.41
CD44-222	ENST00000526025		Q6ZRX8	168 aa		12.5	□□□□□ -0.41
CD44-222	ENST00000526025	HINT1	P49773	126 aa	Predicted RBP	12.49	□□□□□ -0.41
CD44-222	ENST00000526025	DMBT1	Q9UGM3	2413 aa	Predicted RBP	12.48	□□□□□ -0.41
CD44-222	ENST00000526025	KRTAP1-4	P0C5Y4	121 aa		12.48	□□□□□ -0.41
CD44-222	ENST00000526025	CEND1	Q8N111	149 aa		12.48	□□□□□ -0.41
CD44-222	ENST00000526025	TRBV7-6	A0A0J9YX20	115 aa		12.47	□□□□□ -0.41
CD44-222	ENST00000526025	HSD52	Q0P140	79 aa		12.47	□□□□□ -0.41
CD44-222	ENST00000526025	HIGD2A	Q9BW72	106 aa		12.46	□□□□□ -0.41
CD44-222	ENST00000526025	TMEM238L	A0A1B0GVL6	79 aa		12.45	□□□□□ -0.42
CD44-222	ENST00000526025		A6NJY4	79 aa		12.45	□□□□□ -0.42
CD44-222	ENST00000526025	SMCR5	Q8TEV8	140 aa		12.45	□□□□□ -0.42
CD44-222	ENST00000526025	C6orf99	Q4VX62	202 aa		12.44	□□□□□ -0.42
CD44-222	ENST00000526025		A0A0B4J2C4	111 aa		12.43	□□□□□ -0.42
CD44-222	ENST00000526025		J3QL48	77 aa		12.42	□□□□□ -0.42
CD44-222	ENST00000526025	CFC1B	P0CG36	223 aa		12.42	□□□□□ -0.42
CD44-222	ENST00000526025	CFC1	P0CG37	223 aa		12.42	□□□□□ -0.42
CD44-222	ENST00000526025	ELOF1	P60002	83 aa	Known RBP	12.42	□□□□□ -0.42
CD44-222	ENST00000526025		Q9BRP9	147 aa		12.42	□□□□□ -0.42
CD44-222	ENST00000526025	ZNF706	Q9Y5V0	76 aa	Predicted RBP	12.42	□□□□□ -0.42
CD44-222	ENST00000526025		A0A1B0GWB2	263 aa		12.41	□□□□□ -0.42
CD44-222	ENST00000526025	MT1HL1	P0DM35	61 aa		12.41	□□□□□ -0.42
CD44-222	ENST00000526025	SMIM11B	Q8TCY0	68 aa		12.41	□□□□□ -0.42
CD44-222	ENST00000526025	TNXB	P22105	4242 aa		12.41	□□□□□ -0.42
CD44-222	ENST00000526025	COX7B	P24311	80 aa		12.4	□□□□□ -0.42
CD44-222	ENST00000526025	RPL13A	P40429	203 aa	Known RBP	12.4	□□□□□ -0.42
CD44-222	ENST00000526025	C12orf57	Q99622	126 aa		12.4	□□□□□ -0.42
CD44-222	ENST00000526025	DHRS4-AS1	Q9P1J3	65 aa		12.4	□□□□□ -0.42
CD44-222	ENST00000526025	FXYD2	P54710	66 aa		12.39	□□□□□ -0.43
CD44-222	ENST00000526025	KRTAP10-8	P60410	259 aa		12.39	□□□□□ -0.43
CD44-222	ENST00000526025	FAM229B	Q4G0N7	80 aa		12.39	□□□□□ -0.43
CD44-222	ENST00000526025	RAB37	Q96AX2	223 aa		12.39	□□□□□ -0.43
CD44-222	ENST00000526025	PRO1933	Q9H354	126 aa		12.39	□□□□□ -0.43
CD44-222	ENST00000526025	SPRR4	Q96PI1	79 aa		12.38	□□□□□ -0.43
CD44-222	ENST00000526025	TSTD3	H0UI37	97 aa		12.34	□□□□□ -0.43
CD44-222	ENST00000526025	ERC2-IT1	O76042	136 aa		12.34	□□□□□ -0.43
CD44-222	ENST00000526025	CRYGA	P11844	174 aa		12.34	□□□□□ -0.43
CD44-222	ENST00000526025	VAMP3	Q15836	100 aa		12.34	□□□□□ -0.43
CD44-222	ENST00000526025	LINC00483	Q53H64	154 aa		12.33	□□□□□ -0.44
CD44-222	ENST00000526025	PRR26	Q8N8Z3	221 aa		12.33	□□□□□ -0.44
CD44-222	ENST00000526025	PRO1854	Q9UHT4	67 aa		12.33	□□□□□ -0.44
CD44-222	ENST00000526025	NHP2	Q9NX24	153 aa	Known RBP	12.31	□□□□□ -0.44
CD44-222	ENST00000526025		A0A087X002	238 aa		12.3	□□□□□ -0.44
CD44-222	ENST00000526025	BVES-AS1	Q5T3Y7	98 aa		12.3	□□□□□ -0.44
CD44-222	ENST00000526025	ANAPC11	Q9NYG5	84 aa		12.28	□□□□□ -0.44
CD44-222	ENST00000526025		M0R143	59 aa		12.27	□□□□□ -0.45
CD44-222	ENST00000526025		H7C2G1	150 aa		12.26	□□□□□ -0.45
CD44-222	ENST00000526025	CTAG1A	P78358	180 aa		12.26	□□□□□ -0.45
CD44-222	ENST00000526025	SLC25A20	O43772	301 aa		12.25	□□□□□ -0.45
CD44-222	ENST00000526025	SPRR1B	P22528	89 aa		12.25	□□□□□ -0.45
CD44-222	ENST00000526025	KRTAP13-2	Q52LG2	175 aa		12.25	□□□□□ -0.45
CD44-222	ENST00000526025	GAGE2A	Q6NT46	116 aa		12.25	□□□□□ -0.45
CD44-222	ENST00000526025	LINC00575	Q6W349	94 aa		12.25	□□□□□ -0.45
CD44-222	ENST00000526025		Q1RN00	199 aa		12.24	□□□□□ -0.45
CD44-222	ENST00000526025		H0YGX0	51 aa		12.23	□□□□□ -0.45
CD44-222	ENST00000526025	ST20-AS1	Q8NBB2	130 aa		12.23	□□□□□ -0.45
CD44-222	ENST00000526025	TYMSOS	Q8TAI1	123 aa		12.23	□□□□□ -0.45
CD44-222	ENST00000526025	HERC1	Q15751	4861 aa		12.22	□□□□□ -0.45
CD44-222	ENST00000526025		K7ERJ3	54 aa		12.21	□□□□□ -0.45
CD44-222	ENST00000526025	IGLV5-48	A0A075B6I7	105 aa		12.19	□□□□□ -0.46
CD44-222	ENST00000526025	hADV29S1	A0JD25	119 aa		12.19	□□□□□ -0.46
CD44-222	ENST00000526025	TEX49	A0A1B0GTD5	131 aa		12.18	□□□□□ -0.46
CD44-222	ENST00000526025	C3orf22	Q8N5N4	141 aa		12.17	□□□□□ -0.46
CD44-222	ENST00000526025	TRIAP1	O43715	76 aa		12.16	□□□□□ -0.46
CD44-222	ENST00000526025	SNCG	O76070	127 aa		12.16	□□□□□ -0.46
CD44-222	ENST00000526025	TSPAN13	O95857	204 aa		12.16	□□□□□ -0.46
CD44-222	ENST00000526025		A0A1B0GX51	115 aa		12.15	□□□□□ -0.46
CD44-222	ENST00000526025	LINC01547	P58512	204 aa	Predicted RBP	12.15	□□□□□ -0.46
CD44-222	ENST00000526025	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	12.15	□□□□□ -0.46
CD44-222	ENST00000526025	COX6C	P09669	75 aa		12.13	□□□□□ -0.47
CD44-222	ENST00000526025		Q6ZQY7	126 aa		12.13	□□□□□ -0.47
CD44-222	ENST00000526025	SSBP3-AS1	Q7Z2R9	100 aa		12.12	□□□□□ -0.47
CD44-222	ENST00000526025	LAMTOR3	Q9UHA4	124 aa		12.12	□□□□□ -0.47
CD44-222	ENST00000526025	PSMB2	P49721	201 aa		12.11	□□□□□ -0.47
CD44-222	ENST00000526025	LINC00304	Q8N9R0	145 aa		12.11	□□□□□ -0.47
CD44-222	ENST00000526025	DEFB105A	Q8NG35	78 aa		12.11	□□□□□ -0.47
CD44-222	ENST00000526025	PPDPFL	Q8WWR9	84 aa		12.11	□□□□□ -0.47
CD44-222	ENST00000526025		Q8N377	158 aa		12.1	□□□□□ -0.47
CD44-222	ENST00000526025	FAM218A	Q96MZ4	157 aa		12.1	□□□□□ -0.47
CD44-222	ENST00000526025	IGLV9-49	A0A0B4J1Y8	123 aa		12.09	□□□□□ -0.47
CD44-222	ENST00000526025	MOBP	Q13875	183 aa		12.09	□□□□□ -0.47
CD44-222	ENST00000526025	OCIAD2	Q56VL3	154 aa		12.09	□□□□□ -0.47
CD44-222	ENST00000526025		Q8NBF4	154 aa		12.09	□□□□□ -0.47
CD44-222	ENST00000526025	SPAG11A	Q6PDA7	123 aa		12.08	□□□□□ -0.48
CD44-222	ENST00000526025	SMIM29	Q86T20	159 aa		12.08	□□□□□ -0.48

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