RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 UBE2D2P62837 147 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 SPAG11BQ08648 103 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 WFDC2Q14508 124 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 ETDBQ3ZM63 59 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 Q8IZM0 81 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 LINC00208Q96KT6 92 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 AMELXQ99217 191 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 CNFNQ9BYD5 112 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 LINC00474Q9P2X8 69 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 CDKN2A-AS1Q9UH64 79 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 MYO18AQ92614 2054 aaKnown RBP0.4□□□□□ -2.35
VPS50-219ENST00000495039 LRRC37AA6NMS7 1700 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 ARAP2Q8WZ64 1704 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 PARP14Q460N5 1801 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 DOCK2Q92608 1830 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 TCHHQ07283 1943 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 KMT2DO14686 5537 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 CHD3Q12873 2000 aaKnown RBP0.4□□□□□ -2.35
VPS50-219ENST00000495039 DLEC1Q9Y238 1755 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 MYH9P35579 1960 aaKnown RBP0.39□□□□□ -2.35
VPS50-219ENST00000495039 GPR98Q8WXG9 6306 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 MUC4Q99102 2169 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 PLXNB2O15031 1838 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 XIRP1Q702N8 1843 aaKnown RBP0.39□□□□□ -2.35
VPS50-219ENST00000495039 NBDYA0A0U1RRE5 68 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 LINC01546A6NGU7 62 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 K7EIL1 84 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 KRTAP21-1Q3LI58 79 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 C9orf116Q5BN46 136 aaPredicted RBP0.39□□□□□ -2.35
VPS50-219ENST00000495039 LINC01556Q5JQF7 62 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 C9orf153Q5TBE3 101 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 ENHOQ6UWT2 76 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 SSBP3-AS1Q7Z2R9 100 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 LINC00643Q86TS7 51 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 WFDC10BQ8IUB3 73 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 SMIM11BQ8TCY0 68 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 PLAC4Q8WY50 150 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 APLNQ9ULZ1 77 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 SPAG17Q6Q759 2223 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 CDK5RAP2Q96SN8 1893 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 TANC2Q9HCD6 1990 aa0.39□□□□□ -2.35
VPS50-219ENST00000495039 A0A0G2JMZ2 1700 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 LRRC37A2A6NM11 1700 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 SBF2Q86WG5 1849 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 MYH7P12883 1935 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 TET1Q8NFU7 2136 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 PLXNA1Q9UIW2 1896 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 LAMB1P07942 1786 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 A0A096LNT2 108 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 GVQW2A0A096LPI5 108 aaPredicted RBP0.38□□□□□ -2.35
VPS50-219ENST00000495039 TRBV10-3A0A0K0K1G6 114 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 A8MTW9 85 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 CHKB-CPT1BH3BT56 60 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 ATOX1O00244 68 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 SMR3BP02814 79 aaPredicted RBP0.38□□□□□ -2.35
VPS50-219ENST00000495039 Q6JHZ5 121 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 SPINK6Q6UWN8 80 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 C20orf197Q8N268 126 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 C6orf48Q9UBA6 75 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 SERP1Q9Y6X1 66 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 TSC2P49815 1807 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 FOCADQ5VW36 1801 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 VIRMAQ69YN4 1812 aaKnown RBP0.38□□□□□ -2.35
VPS50-219ENST00000495039 ARFGEF1Q9Y6D6 1849 aa0.38□□□□□ -2.35
VPS50-219ENST00000495039 URB1O60287 2271 aaKnown RBP0.38□□□□□ -2.35
VPS50-219ENST00000495039 ZGRF1Q86YA3 2104 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 MYH6P13533 1939 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 PSME4Q14997 1843 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 A0A087WTM6 91 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 TRBV7-4A0A0J9YYF1 115 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 HCG22E2RYF7 251 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 NDUFC1O43677 76 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 BCE1O60756 84 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 SPINK1P00995 79 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 MT-ATP8P03928 68 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 ACYP2P14621 99 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 ELOF1P60002 83 aaKnown RBP0.37□□□□□ -2.35
VPS50-219ENST00000495039 RPL37P61927 97 aaKnown RBP0.37□□□□□ -2.35
VPS50-219ENST00000495039 PRLHP81277 87 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 SPAG11AQ6PDA7 123 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 WFDC13Q8IUB5 93 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 SERP2Q8N6R1 65 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 SPTSSBQ8NFR3 76 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 Q96NJ1 140 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 PRR15LQ9BU68 103 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 KCNQ1DNQ9H478 68 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 TP53AIP1Q9HCN2 124 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 LINC00846Q9NV44 126 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 NINQ8N4C6 2090 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 TRPM7Q96QT4 1865 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 RBBP6Q7Z6E9 1792 aaKnown RBP0.37□□□□□ -2.35
VPS50-219ENST00000495039 SPTBP11277 2137 aa0.37□□□□□ -2.35
VPS50-219ENST00000495039 KIAA1549LQ6ZVL6 1849 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 PATJQ8NI35 1801 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 WNK3Q9BYP7 1800 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 F5P12259 2224 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 MYO7AQ13402 2215 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 KIAA0100Q14667 2235 aaKnown RBP0.36□□□□□ -2.35
VPS50-219ENST00000495039 PLXNA2O75051 1894 aa0.36□□□□□ -2.35
VPS50-219ENST00000495039 PDCD11Q14690 1871 aaKnown RBP0.36□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 137.8 ms