RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 TMEM238LA0A1B0GVL6 79 aa10.59□□□□□ -0.71
LIME1-208ENST00000493265 A6NJY4 79 aa10.59□□□□□ -0.71
LIME1-208ENST00000493265 TRAV23DV6A0A075B6W5 121 aa10.58□□□□□ -0.72
LIME1-208ENST00000493265 PRYO14603 147 aa10.58□□□□□ -0.72
LIME1-208ENST00000493265 CFC1BP0CG36 223 aa10.58□□□□□ -0.72
LIME1-208ENST00000493265 CFC1P0CG37 223 aa10.58□□□□□ -0.72
LIME1-208ENST00000493265 HINT1P49773 126 aaPredicted RBP10.58□□□□□ -0.72
LIME1-208ENST00000493265 RAB37Q96AX2 223 aa10.58□□□□□ -0.72
LIME1-208ENST00000493265 KCNQ1DNQ9H478 68 aa10.58□□□□□ -0.72
LIME1-208ENST00000493265 RPL13AP40429 203 aaKnown RBP10.57□□□□□ -0.72
LIME1-208ENST00000493265 FAM19A1Q7Z5A9 133 aa10.57□□□□□ -0.72
LIME1-208ENST00000493265 NHP2Q9NX24 153 aaKnown RBP10.57□□□□□ -0.72
LIME1-208ENST00000493265 H7C2G1 150 aa10.56□□□□□ -0.72
LIME1-208ENST00000493265 BCE1O60756 84 aa10.56□□□□□ -0.72
LIME1-208ENST00000493265 BVES-AS1Q5T3Y7 98 aa10.56□□□□□ -0.72
LIME1-208ENST00000493265 UBE2AP49459 152 aa10.55□□□□□ -0.72
LIME1-208ENST00000493265 ETDCA0A1B0GVM5 59 aa10.54□□□□□ -0.72
LIME1-208ENST00000493265 K7ERJ3 54 aa10.54□□□□□ -0.72
LIME1-208ENST00000493265 IGLV7-43P04211 117 aa10.54□□□□□ -0.72
LIME1-208ENST00000493265 KRTAP10-4P60372 401 aaPredicted RBP10.54□□□□□ -0.72
LIME1-208ENST00000493265 PRLHP81277 87 aa10.54□□□□□ -0.72
LIME1-208ENST00000493265 A0A0B4J2C4 111 aa10.53□□□□□ -0.72
LIME1-208ENST00000493265 M0R143 59 aa10.53□□□□□ -0.72
LIME1-208ENST00000493265 ZNF73O43830 326 aaPredicted RBP10.53□□□□□ -0.72
LIME1-208ENST00000493265 CBY1Q9Y3M2 126 aa10.53□□□□□ -0.72
LIME1-208ENST00000493265 BATFQ16520 125 aa10.52□□□□□ -0.73
LIME1-208ENST00000493265 SMIM11BQ8TCY0 68 aa10.52□□□□□ -0.73
LIME1-208ENST00000493265 PCP4L1A6NKN8 68 aa10.51□□□□□ -0.73
LIME1-208ENST00000493265 Q1RN00 199 aa10.51□□□□□ -0.73
LIME1-208ENST00000493265 C6orf99Q4VX62 202 aa10.51□□□□□ -0.73
LIME1-208ENST00000493265 DIRC1Q969H9 104 aa10.51□□□□□ -0.73
LIME1-208ENST00000493265 PRO1854Q9UHT4 67 aa10.51□□□□□ -0.73
LIME1-208ENST00000493265 SPRR1AP35321 89 aa10.5□□□□□ -0.73
LIME1-208ENST00000493265 KRTAP29-1A8MX34 341 aaPredicted RBP10.49□□□□□ -0.73
LIME1-208ENST00000493265 RPL28P46779 137 aaKnown RBP10.49□□□□□ -0.73
LIME1-208ENST00000493265 HMCN2Q8NDA2 5059 aa10.49□□□□□ -0.73
LIME1-208ENST00000493265 KRTAP4-16G5E9R7 235 aaPredicted RBP10.48□□□□□ -0.73
LIME1-208ENST00000493265 ZNF861PO60384 105 aa10.48□□□□□ -0.73
LIME1-208ENST00000493265 LRP1Q07954 4544 aaKnown RBP10.47□□□□□ -0.73
LIME1-208ENST00000493265 B5MCH6 92 aa10.47□□□□□ -0.73
LIME1-208ENST00000493265 HIGD2AQ9BW72 106 aa10.47□□□□□ -0.73
LIME1-208ENST00000493265 COX7BP24311 80 aa10.46□□□□□ -0.73
LIME1-208ENST00000493265 A0A1B0GWB2 263 aa10.45□□□□□ -0.74
LIME1-208ENST00000493265 KRTAP13-1Q8IUC0 172 aa10.45□□□□□ -0.74
LIME1-208ENST00000493265 UBR4Q5T4S7 5183 aa10.44□□□□□ -0.74
LIME1-208ENST00000493265 Q6ZRX8 168 aa10.44□□□□□ -0.74
LIME1-208ENST00000493265 FAT3Q8TDW7 4589 aa10.43□□□□□ -0.74
LIME1-208ENST00000493265 SPINK6Q6UWN8 80 aa10.43□□□□□ -0.74
LIME1-208ENST00000493265 ELOF1P60002 83 aaKnown RBP10.42□□□□□ -0.74
LIME1-208ENST00000493265 VAMP3Q15836 100 aa10.42□□□□□ -0.74
LIME1-208ENST00000493265 H0Y9J4 135 aa10.41□□□□□ -0.74
LIME1-208ENST00000493265 TSPAN13O95857 204 aa10.41□□□□□ -0.74
LIME1-208ENST00000493265 PSMB2P49721 201 aa10.41□□□□□ -0.74
LIME1-208ENST00000493265 SMCR5Q8TEV8 140 aa10.41□□□□□ -0.74
LIME1-208ENST00000493265 Q9BRP9 147 aa10.41□□□□□ -0.74
LIME1-208ENST00000493265 TRBV7-6A0A0J9YX20 115 aa10.4□□□□□ -0.74
LIME1-208ENST00000493265 ERC2-IT1O76042 136 aa10.39□□□□□ -0.75
LIME1-208ENST00000493265 TRIAP1O43715 76 aa10.38□□□□□ -0.75
LIME1-208ENST00000493265 NAA38Q9BRA0 125 aaKnown RBP10.37□□□□□ -0.75
LIME1-208ENST00000493265 SNHG12Q9BXW3 62 aa10.37□□□□□ -0.75
LIME1-208ENST00000493265 DHRS4-AS1Q9P1J3 65 aa10.37□□□□□ -0.75
LIME1-208ENST00000493265 PKHD1L1Q86WI1 4243 aa10.36□□□□□ -0.75
LIME1-208ENST00000493265 SLC25A20O43772 301 aa10.34□□□□□ -0.75
LIME1-208ENST00000493265 OXTP01178 125 aa10.33□□□□□ -0.76
LIME1-208ENST00000493265 LINC00575Q6W349 94 aa10.33□□□□□ -0.76
LIME1-208ENST00000493265 ST20-AS1Q8NBB2 130 aa10.33□□□□□ -0.76
LIME1-208ENST00000493265 ANAPC11Q9NYG5 84 aa10.33□□□□□ -0.76
LIME1-208ENST00000493265 H0YGX0 51 aa10.32□□□□□ -0.76
LIME1-208ENST00000493265 COX6CP09669 75 aa10.32□□□□□ -0.76
LIME1-208ENST00000493265 SCGB1C2P0DMR2 95 aa10.32□□□□□ -0.76
LIME1-208ENST00000493265 CLEC2BQ92478 149 aa10.32□□□□□ -0.76
LIME1-208ENST00000493265 hADV29S1A0JD25 119 aa10.31□□□□□ -0.76
LIME1-208ENST00000493265 ZNF706Q9Y5V0 76 aaPredicted RBP10.31□□□□□ -0.76
LIME1-208ENST00000493265 GAGE2AQ6NT46 116 aa10.3□□□□□ -0.76
LIME1-208ENST00000493265 DEFB105AQ8NG35 78 aa10.3□□□□□ -0.76
LIME1-208ENST00000493265 FAM218AQ96MZ4 157 aa10.3□□□□□ -0.76
LIME1-208ENST00000493265 SPRR4Q96PI1 79 aa10.3□□□□□ -0.76
LIME1-208ENST00000493265 H3BUT2 72 aa10.28□□□□□ -0.76
LIME1-208ENST00000493265 TAX1BP3O14907 124 aa10.28□□□□□ -0.76
LIME1-208ENST00000493265 KRTAP1-4P0C5Y4 121 aa10.27□□□□□ -0.77
LIME1-208ENST00000493265 COL5A1-AS1Q5SY13 56 aa10.27□□□□□ -0.77
LIME1-208ENST00000493265 SNCGO76070 127 aa10.26□□□□□ -0.77
LIME1-208ENST00000493265 Q6ZQY7 126 aa10.26□□□□□ -0.77
LIME1-208ENST00000493265 C9orf118A6NHY6 69 aa10.24□□□□□ -0.77
LIME1-208ENST00000493265 PRR26Q8N8Z3 221 aa10.24□□□□□ -0.77
LIME1-208ENST00000493265 A0A087X002 238 aa10.21□□□□□ -0.77
LIME1-208ENST00000493265 CRYGAP11844 174 aa10.21□□□□□ -0.77
LIME1-208ENST00000493265 LINC01600Q96MT4 127 aa10.21□□□□□ -0.77
LIME1-208ENST00000493265 TEX49A0A1B0GTD5 131 aa10.2□□□□□ -0.78
LIME1-208ENST00000493265 DNAL4O96015 105 aa10.2□□□□□ -0.78
LIME1-208ENST00000493265 LINC00483Q53H64 154 aa10.2□□□□□ -0.78
LIME1-208ENST00000493265 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.2□□□□□ -0.78
LIME1-208ENST00000493265 IGLV9-49A0A0B4J1Y8 123 aa10.19□□□□□ -0.78
LIME1-208ENST00000493265 A0A1B0GX51 115 aa10.19□□□□□ -0.78
LIME1-208ENST00000493265 TCL1BO95988 128 aa10.19□□□□□ -0.78
LIME1-208ENST00000493265 LINC01547P58512 204 aaPredicted RBP10.19□□□□□ -0.78
LIME1-208ENST00000493265 FAM229BQ4G0N7 80 aa10.19□□□□□ -0.78
LIME1-208ENST00000493265 LYRM7Q5U5X0 104 aa10.19□□□□□ -0.78
LIME1-208ENST00000493265 A0A1W2PPM0 123 aa10.18□□□□□ -0.78
LIME1-208ENST00000493265 LST1O00453 97 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms