RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 HSBP1L1C9JCN9 74 aa9.5□□□□□ -0.89
UPF3A-208ENST00000484246 DDTP30046 118 aa9.5□□□□□ -0.89
UPF3A-208ENST00000484246 S100A12P80511 92 aa9.5□□□□□ -0.89
UPF3A-208ENST00000484246 PRLHP81277 87 aa9.5□□□□□ -0.89
UPF3A-208ENST00000484246 Q6ZVH6 145 aa9.5□□□□□ -0.89
UPF3A-208ENST00000484246 RPL13AP40429 203 aaKnown RBP9.49□□□□□ -0.89
UPF3A-208ENST00000484246 IFITM1P13164 125 aa9.48□□□□□ -0.89
UPF3A-208ENST00000484246 NPC2P61916 151 aa9.48□□□□□ -0.89
UPF3A-208ENST00000484246 PRR26Q8N8Z3 221 aa9.48□□□□□ -0.89
UPF3A-208ENST00000484246 COPS9Q8WXC6 57 aa9.48□□□□□ -0.89
UPF3A-208ENST00000484246 LOC100996750A0A140TA64 210 aa9.47□□□□□ -0.89
UPF3A-208ENST00000484246 KRTAP4-6Q9BYQ5 205 aa9.47□□□□□ -0.89
UPF3A-208ENST00000484246 S100A7L2Q5SY68 101 aa9.46□□□□□ -0.9
UPF3A-208ENST00000484246 CBY1Q9Y3M2 126 aa9.46□□□□□ -0.9
UPF3A-208ENST00000484246 SCGB1D1O95968 90 aa9.45□□□□□ -0.9
UPF3A-208ENST00000484246 FAM229BQ4G0N7 80 aa9.45□□□□□ -0.9
UPF3A-208ENST00000484246 TRAV23DV6A0A075B6W5 121 aa9.44□□□□□ -0.9
UPF3A-208ENST00000484246 ETDCA0A1B0GVM5 59 aa9.44□□□□□ -0.9
UPF3A-208ENST00000484246 LINC00518Q8N0U6 118 aa9.44□□□□□ -0.9
UPF3A-208ENST00000484246 B5MCH6 92 aa9.43□□□□□ -0.9
UPF3A-208ENST00000484246 HIGD2AQ9BW72 106 aa9.43□□□□□ -0.9
UPF3A-208ENST00000484246 A0A087X002 238 aa9.42□□□□□ -0.9
UPF3A-208ENST00000484246 CRYGAP11844 174 aa9.42□□□□□ -0.9
UPF3A-208ENST00000484246 Q6ZRX8 168 aa9.42□□□□□ -0.9
UPF3A-208ENST00000484246 JOSD1Q15040 202 aaPredicted RBP9.41□□□□□ -0.9
UPF3A-208ENST00000484246 DLEU1O43261 78 aa9.4□□□□□ -0.9
UPF3A-208ENST00000484246 ZNF73O43830 326 aaPredicted RBP9.4□□□□□ -0.9
UPF3A-208ENST00000484246 COX8AP10176 69 aa9.4□□□□□ -0.9
UPF3A-208ENST00000484246 SMCR5Q8TEV8 140 aa9.4□□□□□ -0.9
UPF3A-208ENST00000484246 ZNF706Q9Y5V0 76 aaPredicted RBP9.4□□□□□ -0.9
UPF3A-208ENST00000484246 SPRR4Q96PI1 79 aa9.39□□□□□ -0.91
UPF3A-208ENST00000484246 MUSTN1Q8IVN3 82 aa9.38□□□□□ -0.91
UPF3A-208ENST00000484246 Q9BRP9 147 aa9.37□□□□□ -0.91
UPF3A-208ENST00000484246 KRTAP13-2Q52LG2 175 aa9.36□□□□□ -0.91
UPF3A-208ENST00000484246 OR13C6PQ8NH95 151 aa9.36□□□□□ -0.91
UPF3A-208ENST00000484246 ANAPC11Q9NYG5 84 aa9.36□□□□□ -0.91
UPF3A-208ENST00000484246 LINC00483Q53H64 154 aa9.35□□□□□ -0.91
UPF3A-208ENST00000484246 HINT1P49773 126 aaPredicted RBP9.34□□□□□ -0.91
UPF3A-208ENST00000484246 TYMSOSQ8TAI1 123 aa9.34□□□□□ -0.91
UPF3A-208ENST00000484246 VAMP8Q9BV40 100 aa9.34□□□□□ -0.91
UPF3A-208ENST00000484246 SPATA45Q537H7 98 aa9.33□□□□□ -0.92
UPF3A-208ENST00000484246 XP32Q5T750 250 aa9.33□□□□□ -0.92
UPF3A-208ENST00000484246 PAM16Q9Y3D7 125 aa9.33□□□□□ -0.92
UPF3A-208ENST00000484246 TRAV13-2A0A0B4J235 113 aa9.32□□□□□ -0.92
UPF3A-208ENST00000484246 TRBV7-6A0A0J9YX20 115 aa9.32□□□□□ -0.92
UPF3A-208ENST00000484246 ERC2-IT1O76042 136 aa9.32□□□□□ -0.92
UPF3A-208ENST00000484246 HIGD1BQ9P298 99 aa9.32□□□□□ -0.92
UPF3A-208ENST00000484246 TMA7Q9Y2S6 64 aaKnown RBP9.32□□□□□ -0.92
UPF3A-208ENST00000484246 ELOF1P60002 83 aaKnown RBP9.31□□□□□ -0.92
UPF3A-208ENST00000484246 C6orf99Q4VX62 202 aa9.31□□□□□ -0.92
UPF3A-208ENST00000484246 PYY3Q5JQD4 70 aa9.31□□□□□ -0.92
UPF3A-208ENST00000484246 CTAG1AP78358 180 aa9.3□□□□□ -0.92
UPF3A-208ENST00000484246 A4D1N5 150 aa9.29□□□□□ -0.92
UPF3A-208ENST00000484246 A6NDN8 102 aa9.29□□□□□ -0.92
UPF3A-208ENST00000484246 C14orf144Q96I85 54 aa9.29□□□□□ -0.92
UPF3A-208ENST00000484246 DHRS4-AS1Q9P1J3 65 aa9.29□□□□□ -0.92
UPF3A-208ENST00000484246 RNF213Q63HN8 5207 aa9.28□□□□□ -0.92
UPF3A-208ENST00000484246 SLC25A34Q6PIV7 304 aa9.28□□□□□ -0.92
UPF3A-208ENST00000484246 A0A1B0GWB2 263 aa9.27□□□□□ -0.93
UPF3A-208ENST00000484246 COX7BP24311 80 aa9.27□□□□□ -0.93
UPF3A-208ENST00000484246 C3orf22Q8N5N4 141 aa9.27□□□□□ -0.93
UPF3A-208ENST00000484246 HIST1H4GQ99525 98 aa9.27□□□□□ -0.93
UPF3A-208ENST00000484246 C2orf91Q6ZV80 131 aa9.26□□□□□ -0.93
UPF3A-208ENST00000484246 LINC00304Q8N9R0 145 aa9.26□□□□□ -0.93
UPF3A-208ENST00000484246 SPRR1BP22528 89 aa9.25□□□□□ -0.93
UPF3A-208ENST00000484246 GAGE2AQ6NT46 116 aa9.25□□□□□ -0.93
UPF3A-208ENST00000484246 SMIM11BQ8TCY0 68 aa9.25□□□□□ -0.93
UPF3A-208ENST00000484246 TAL2Q16559 108 aa9.23□□□□□ -0.93
UPF3A-208ENST00000484246 SPAG11AQ6PDA7 123 aa9.22□□□□□ -0.93
UPF3A-208ENST00000484246 ST20-AS1Q8NBB2 130 aa9.22□□□□□ -0.93
UPF3A-208ENST00000484246 SSBP3-AS1Q7Z2R9 100 aa9.19□□□□□ -0.94
UPF3A-208ENST00000484246 A0A0B4J2C4 111 aa9.18□□□□□ -0.94
UPF3A-208ENST00000484246 Q8NBF4 154 aa9.18□□□□□ -0.94
UPF3A-208ENST00000484246 NHP2Q9NX24 153 aaKnown RBP9.18□□□□□ -0.94
UPF3A-208ENST00000484246 IGLV5-48A0A075B6I7 105 aa9.17□□□□□ -0.94
UPF3A-208ENST00000484246 TSPAN13O95857 204 aa9.17□□□□□ -0.94
UPF3A-208ENST00000484246 CFC1BP0CG36 223 aa9.17□□□□□ -0.94
UPF3A-208ENST00000484246 CFC1P0CG37 223 aa9.17□□□□□ -0.94
UPF3A-208ENST00000484246 MOBPQ13875 183 aa9.17□□□□□ -0.94
UPF3A-208ENST00000484246 CEND1Q8N111 149 aa9.17□□□□□ -0.94
UPF3A-208ENST00000484246 C12orf57Q99622 126 aa9.17□□□□□ -0.94
UPF3A-208ENST00000484246 VAMP3Q15836 100 aa9.16□□□□□ -0.94
UPF3A-208ENST00000484246 LRP2P98164 4655 aa9.16□□□□□ -0.94
UPF3A-208ENST00000484246 IGLV9-49A0A0B4J1Y8 123 aa9.15□□□□□ -0.94
UPF3A-208ENST00000484246 TEX49A0A1B0GTD5 131 aa9.14□□□□□ -0.95
UPF3A-208ENST00000484246 LINC01547P58512 204 aaPredicted RBP9.14□□□□□ -0.95
UPF3A-208ENST00000484246 RPS29P62273 56 aaKnown RBP9.14□□□□□ -0.95
UPF3A-208ENST00000484246 LINC00575Q6W349 94 aa9.14□□□□□ -0.95
UPF3A-208ENST00000484246 UQCR10Q9UDW1 63 aa9.14□□□□□ -0.95
UPF3A-208ENST00000484246 SPINK1P00995 79 aa9.13□□□□□ -0.95
UPF3A-208ENST00000484246 HSD52Q0P140 79 aa9.13□□□□□ -0.95
UPF3A-208ENST00000484246 BVES-AS1Q5T3Y7 98 aa9.13□□□□□ -0.95
UPF3A-208ENST00000484246 SLC25A20O43772 301 aa9.12□□□□□ -0.95
UPF3A-208ENST00000484246 FXYD2P54710 66 aa9.12□□□□□ -0.95
UPF3A-208ENST00000484246 RAB37Q96AX2 223 aa9.12□□□□□ -0.95
UPF3A-208ENST00000484246 LAMTOR3Q9UHA4 124 aa9.12□□□□□ -0.95
UPF3A-208ENST00000484246 H3BS24 57 aa9.11□□□□□ -0.95
UPF3A-208ENST00000484246 PRR4Q16378 134 aa9.1□□□□□ -0.95
UPF3A-208ENST00000484246 C9orf153Q5TBE3 101 aa9.1□□□□□ -0.95
UPF3A-208ENST00000484246 SMIM6P0DI80 62 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 126.4 ms