RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 IGLV5-39A0A0G2JS06 123 aa6.06□□□□□ -1.44
HDAC3-208ENST00000476739 SRSF9Q13242 221 aaKnown RBP eCLIP6.06□□□□□ -1.44
HDAC3-208ENST00000476739 KRTAP7-1Q8IUC3 87 aa6.06□□□□□ -1.44
HDAC3-208ENST00000476739 C3orf22Q8N5N4 141 aa6.06□□□□□ -1.44
HDAC3-208ENST00000476739 NDUFC2-KCTD14E9PQ53 114 aa6.05□□□□□ -1.44
HDAC3-208ENST00000476739 H3BT86 120 aa6.05□□□□□ -1.44
HDAC3-208ENST00000476739 C9orf129Q5T035 196 aaKnown RBP6.05□□□□□ -1.44
HDAC3-208ENST00000476739 PRO1854Q9UHT4 67 aa6.05□□□□□ -1.44
HDAC3-208ENST00000476739 PKHD1L1Q86WI1 4243 aa6.05□□□□□ -1.44
HDAC3-208ENST00000476739 TRBV10-2A0A0K0K1G8 114 aa6.04□□□□□ -1.44
HDAC3-208ENST00000476739 C9JAW5 83 aa6.04□□□□□ -1.44
HDAC3-208ENST00000476739 CXCL5P42830 114 aa6.04□□□□□ -1.44
HDAC3-208ENST00000476739 C9orf153Q5TBE3 101 aa6.04□□□□□ -1.44
HDAC3-208ENST00000476739 SCGB1D4Q6XE38 83 aa6.04□□□□□ -1.44
HDAC3-208ENST00000476739 PHF5AQ7RTV0 110 aaKnown RBP6.04□□□□□ -1.44
HDAC3-208ENST00000476739 SRRM2Q9UQ35 2752 aaKnown RBP6.04□□□□□ -1.44
HDAC3-208ENST00000476739 A0A0B4J2C4 111 aa6.03□□□□□ -1.44
HDAC3-208ENST00000476739 TMEM223A0PJW6 202 aa6.03□□□□□ -1.44
HDAC3-208ENST00000476739 TCL1BO95988 128 aa6.03□□□□□ -1.44
HDAC3-208ENST00000476739 COX6CP09669 75 aa6.03□□□□□ -1.44
HDAC3-208ENST00000476739 FAM19A5Q7Z5A7 132 aaPredicted RBP6.03□□□□□ -1.44
HDAC3-208ENST00000476739 C7orf33Q8WU49 177 aa6.03□□□□□ -1.44
HDAC3-208ENST00000476739 PPDPFQ9H3Y8 114 aa6.03□□□□□ -1.44
HDAC3-208ENST00000476739 MYCBP2O75592 4640 aa6.02□□□□□ -1.45
HDAC3-208ENST00000476739 PRR3P79522 188 aaKnown RBP6.02□□□□□ -1.45
HDAC3-208ENST00000476739 KRTAP11-1Q8IUC1 163 aa6.02□□□□□ -1.45
HDAC3-208ENST00000476739 XAGE1AQ9HD64 81 aa6.02□□□□□ -1.45
HDAC3-208ENST00000476739 A4D1N5 150 aa6.01□□□□□ -1.45
HDAC3-208ENST00000476739 ZNF815PA8K554 130 aa6.01□□□□□ -1.45
HDAC3-208ENST00000476739 CRYGAP11844 174 aa6.01□□□□□ -1.45
HDAC3-208ENST00000476739 TMEM258P61165 79 aa6.01□□□□□ -1.45
HDAC3-208ENST00000476739 SERTAD4-AS1Q5TG53 156 aa6.01□□□□□ -1.45
HDAC3-208ENST00000476739 LINC00643Q86TS7 51 aa6.01□□□□□ -1.45
HDAC3-208ENST00000476739 ZNF625Q96I27 306 aaPredicted RBP6.01□□□□□ -1.45
HDAC3-208ENST00000476739 ATOX1O00244 68 aa6□□□□□ -1.45
HDAC3-208ENST00000476739 CFC1BP0CG36 223 aa6□□□□□ -1.45
HDAC3-208ENST00000476739 CFC1P0CG37 223 aa6□□□□□ -1.45
HDAC3-208ENST00000476739 GAGE2AQ6NT46 116 aa6□□□□□ -1.45
HDAC3-208ENST00000476739 LRP1Q07954 4544 aaKnown RBP5.99□□□□□ -1.45
HDAC3-208ENST00000476739 COX7CP15954 63 aa5.99□□□□□ -1.45
HDAC3-208ENST00000476739 PFN2P35080 140 aa5.99□□□□□ -1.45
HDAC3-208ENST00000476739 PSORS1C2Q9UIG4 136 aa5.99□□□□□ -1.45
HDAC3-208ENST00000476739 TRACP01848 142 aa5.98□□□□□ -1.45
HDAC3-208ENST00000476739 TSPEAR-AS2P59090 65 aa5.98□□□□□ -1.45
HDAC3-208ENST00000476739 FAT3Q8TDW7 4589 aa5.98□□□□□ -1.45
HDAC3-208ENST00000476739 C22orf24Q9Y442 160 aa5.97□□□□□ -1.45
HDAC3-208ENST00000476739 KRTAP29-1A8MX34 341 aaPredicted RBP5.96□□□□□ -1.46
HDAC3-208ENST00000476739 COPS9Q8WXC6 57 aa5.96□□□□□ -1.46
HDAC3-208ENST00000476739 A0A0U1RRA0 63 aa5.95□□□□□ -1.46
HDAC3-208ENST00000476739 C1orf137Q5JT78 98 aa5.95□□□□□ -1.46
HDAC3-208ENST00000476739 Q8NDZ9 215 aa5.95□□□□□ -1.46
HDAC3-208ENST00000476739 TTTY13Q9BZ97 58 aa5.95□□□□□ -1.46
HDAC3-208ENST00000476739 SND1-IT1Q9HBX3 110 aa5.95□□□□□ -1.46
HDAC3-208ENST00000476739 LEPROTO15243 131 aa5.94□□□□□ -1.46
HDAC3-208ENST00000476739 UBE2BP63146 152 aa5.94□□□□□ -1.46
HDAC3-208ENST00000476739 COX17Q14061 63 aa5.94□□□□□ -1.46
HDAC3-208ENST00000476739 PLEKHB2Q96CS7 222 aa5.94□□□□□ -1.46
HDAC3-208ENST00000476739 NDUFA12Q9UI09 145 aa5.94□□□□□ -1.46
HDAC3-208ENST00000476739 PLA2G2DQ9UNK4 145 aa5.94□□□□□ -1.46
HDAC3-208ENST00000476739 FAM236AA0A1B0GUQ0 79 aa5.93□□□□□ -1.46
HDAC3-208ENST00000476739 FAM236BA0A1B0GV22 79 aa5.93□□□□□ -1.46
HDAC3-208ENST00000476739 LGALS3P17931 250 aaKnown RBP5.93□□□□□ -1.46
HDAC3-208ENST00000476739 LINC00158P58513 81 aa5.93□□□□□ -1.46
HDAC3-208ENST00000476739 SFTA2Q6UW10 78 aa5.93□□□□□ -1.46
HDAC3-208ENST00000476739 MRPL55Q7Z7F7 128 aaKnown RBP5.93□□□□□ -1.46
HDAC3-208ENST00000476739 LINC00167Q96N53 147 aa5.93□□□□□ -1.46
HDAC3-208ENST00000476739 IGLV5-37A0A075B6J1 123 aa5.92□□□□□ -1.46
HDAC3-208ENST00000476739 RPL37AP8A6NKH3 93 aa5.92□□□□□ -1.46
HDAC3-208ENST00000476739 J3QL48 77 aa5.92□□□□□ -1.46
HDAC3-208ENST00000476739 J3QQQ9 107 aa5.92□□□□□ -1.46
HDAC3-208ENST00000476739 OXTP01178 125 aa5.92□□□□□ -1.46
HDAC3-208ENST00000476739 IGLV7-43P04211 117 aa5.92□□□□□ -1.46
HDAC3-208ENST00000476739 VPREB1P12018 145 aa5.92□□□□□ -1.46
HDAC3-208ENST00000476739 Q1RN00 199 aa5.92□□□□□ -1.46
HDAC3-208ENST00000476739 SPINK6Q6UWN8 80 aa5.92□□□□□ -1.46
HDAC3-208ENST00000476739 DAND5Q8N907 189 aa5.92□□□□□ -1.46
HDAC3-208ENST00000476739 PRO0628Q9UI54 55 aa5.92□□□□□ -1.46
HDAC3-208ENST00000476739 MT1HL1P0DM35 61 aa5.91□□□□□ -1.46
HDAC3-208ENST00000476739 HERC1Q15751 4861 aa5.91□□□□□ -1.46
HDAC3-208ENST00000476739 NDUFC2O95298 119 aa5.9□□□□□ -1.46
HDAC3-208ENST00000476739 MIR7-3HGQ8N6C7 128 aa5.9□□□□□ -1.46
HDAC3-208ENST00000476739 DMBT1Q9UGM3 2413 aaPredicted RBP5.89□□□□□ -1.47
HDAC3-208ENST00000476739 TEX49A0A1B0GTD5 131 aa5.89□□□□□ -1.47
HDAC3-208ENST00000476739 LST1O00453 97 aa5.89□□□□□ -1.47
HDAC3-208ENST00000476739 NKAPP1Q8N9T2 125 aa5.89□□□□□ -1.47
HDAC3-208ENST00000476739 TNXBP22105 4242 aa5.88□□□□□ -1.47
HDAC3-208ENST00000476739 IGKV2-28A0A075B6P5 120 aa5.88□□□□□ -1.47
HDAC3-208ENST00000476739 A0A0J9YXY3 114 aa5.88□□□□□ -1.47
HDAC3-208ENST00000476739 BCE1O60756 84 aa5.88□□□□□ -1.47
HDAC3-208ENST00000476739 IGKV2D-28P01615 120 aa5.88□□□□□ -1.47
HDAC3-208ENST00000476739 HIST1H4AP62805 103 aaKnown RBP5.88□□□□□ -1.47
HDAC3-208ENST00000476739 SERP2Q8N6R1 65 aa5.88□□□□□ -1.47
HDAC3-208ENST00000476739 IGLV1-50A0A075B6I6 118 aa5.87□□□□□ -1.47
HDAC3-208ENST00000476739 TIMM17BO60830 172 aa5.87□□□□□ -1.47
HDAC3-208ENST00000476739 EIF4EBP3O60516 100 aaPredicted RBP5.86□□□□□ -1.47
HDAC3-208ENST00000476739 S100A7L2Q5SY68 101 aa5.86□□□□□ -1.47
HDAC3-208ENST00000476739 ADAMTSL4-AS1Q5T5F5 129 aa5.86□□□□□ -1.47
HDAC3-208ENST00000476739 H0Y9J4 135 aa5.85□□□□□ -1.47
HDAC3-208ENST00000476739 NCR3O14931 201 aa5.85□□□□□ -1.47
HDAC3-208ENST00000476739 ZNF861PO60384 105 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms